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PMC:7199903 / 15078-15454 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T80 89-92 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T81 205-218 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T82 265-270 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T83 360-366 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T84 370-375 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 360-366 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T53 37-45 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 56-64 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T89 260-270 http://purl.obolibrary.org/obo/CLO_0054159 denotes 293F cells
T90 315-320 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T91 360-366 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T92 360-366 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T93 360-366 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T94 370-375 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T152 205-218 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T153 367-369 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T66 108-112 http://purl.obolibrary.org/obo/BFO_0000029 denotes Site
T67 265-270 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T68 315-320 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T69 370-375 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T41336 0-4 IN denotes From
T97920 5-9 VBN denotes left
T3138 10-12 TO denotes to
T98195 13-18 NN denotes right
T98726 18-19 -COMMA- denotes ,
T65645 20-28 NN denotes MERS-CoV
T55778 29-30 NN denotes S
T79525 31-32 -LRB- denotes (
T68767 32-34 CD denotes 10
T41460 34-35 -RRB- denotes )
T31844 35-36 -COMMA- denotes ,
T7043 37-47 NN denotes SARS-CoV-1
T97863 48-49 NN denotes S
T92081 50-51 -LRB- denotes (
T69656 51-53 CD denotes 10
T67545 53-54 -RRB- denotes )
T47349 54-55 -COMMA- denotes ,
T62941 56-66 NN denotes SARS-CoV-2
T30429 67-68 NNP denotes S
T58688 68-69 -COMMA- denotes ,
T40283 70-74 NN denotes LASV
T77775 75-78 NN denotes GPC
T96446 79-80 -LRB- denotes (
T18926 80-82 CD denotes 24
T91299 82-83 -RRB- denotes )
T3350 83-84 -COMMA- denotes ,
T10998 85-88 CC denotes and
T7671 89-94 NN denotes HIV-1
T16812 95-98 NN denotes Env
T28102 99-100 -LRB- denotes (
T93293 100-101 CD denotes 8
T27600 101-102 -COMMA- denotes ,
T65727 103-105 CD denotes 21
T28148 105-106 -RRB- denotes )
T15226 108-121 JJ denotes Site-specific
T75794 122-130 JJ denotes N-linked
T71346 131-137 NN denotes glycan
T89202 138-150 NN denotes oligomannose
T68062 151-166 NNS denotes quantifications
T84121 167-170 VBP denotes are
T74313 171-178 VBN denotes colored
T62704 179-188 VBG denotes according
T82646 189-191 TO denotes to
T60233 192-195 DT denotes the
T78311 196-199 NN denotes key
T46576 201-204 DT denotes All
T7521 205-218 NNS denotes glycoproteins
T49353 219-223 VBD denotes were
T79250 224-233 VBN denotes expressed
T39461 234-236 IN denotes as
T6442 237-244 JJ denotes soluble
T51716 245-252 NNS denotes trimers
T96313 253-255 IN denotes in
T76075 256-259 NN denotes HEK
T83301 260-264 NN denotes 293F
T61867 265-270 NNS denotes cells
T91642 271-276 RB denotes apart
T87881 277-281 IN denotes from
T78049 282-286 NN denotes LASV
T7141 287-290 NN denotes GPC
T10679 290-291 -COMMA- denotes ,
T35984 292-297 WDT denotes which
T80005 298-301 VBD denotes was
T17581 302-309 VBN denotes derived
T67465 310-314 IN denotes from
T10445 315-325 JJ denotes virus-like
T56154 326-335 NNS denotes particles
T16557 336-340 IN denotes from
T21578 341-352 JJ denotes Madin-Darby
T80613 353-359 JJ denotes canine
T39899 360-366 NN denotes kidney
T98529 367-369 CD denotes II
T92146 370-375 NNS denotes cells
R98005 T97920 T41336 arg1Of left,From
R78400 T30429 T97920 arg2Of S,left
R34582 T97920 T3138 arg1Of left,to
R7903 T51716 T39461 arg2Of trimers,as
R21278 T51716 T6442 arg1Of trimers,soluble
R19609 T51716 T96313 arg1Of trimers,in
R79690 T61867 T96313 arg2Of cells,in
R12669 T61867 T76075 arg1Of cells,HEK
R98845 T61867 T83301 arg1Of cells,293F
R82558 T87881 T91642 arg1Of from,apart
R94995 T79250 T87881 arg1Of expressed,from
R66598 T7141 T87881 arg2Of GPC,from
R42036 T7141 T78049 arg1Of GPC,LASV
R16316 T7141 T10679 arg1Of GPC,","
R37379 T7141 T35984 arg1Of GPC,which
R19640 T7141 T80005 arg1Of GPC,was
R64365 T31844 T3138 arg2Of ",",to
R91843 T98195 T98726 arg1Of right,","
R68196 T55778 T98726 arg2Of S,","
R92830 T55778 T65645 arg1Of S,MERS-CoV
R48191 T55778 T79525 arg1Of S,(
R65364 T68767 T79525 arg2Of 10,(
R88214 T41460 T79525 arg3Of ),(
R84018 T98195 T31844 arg1Of right,","
R61414 T97863 T31844 arg2Of S,","
R19513 T97863 T7043 arg1Of S,SARS-CoV-1
R90484 T97863 T92081 arg1Of S,(
R69896 T69656 T92081 arg2Of 10,(
R70766 T67545 T92081 arg3Of ),(
R89840 T97920 T47349 arg1Of left,","
R71566 T30429 T62941 arg1Of S,SARS-CoV-2
R19774 T30429 T58688 arg1Of S,","
R99060 T77775 T58688 arg2Of GPC,","
R59944 T77775 T40283 arg1Of GPC,LASV
R46010 T77775 T96446 arg1Of GPC,(
R31694 T18926 T96446 arg2Of 24,(
R65536 T91299 T96446 arg3Of ),(
R55994 T10998 T3350 arg1Of and,","
R88003 T30429 T10998 arg1Of S,and
R99442 T16812 T10998 arg2Of Env,and
R69151 T16812 T7671 arg1Of Env,HIV-1
R61424 T16812 T28102 arg1Of Env,(
R5445 T93293 T28102 arg2Of 8,(
R98014 T28148 T28102 arg3Of ),(
R40617 T93293 T27600 arg1Of 8,","
R50318 T65727 T27600 arg2Of 21,","
R42581 T68062 T15226 arg1Of quantifications,Site-specific
R51067 T68062 T75794 arg1Of quantifications,N-linked
R80570 T68062 T71346 arg1Of quantifications,glycan
R15302 T68062 T89202 arg1Of quantifications,oligomannose
R56700 T68062 T84121 arg1Of quantifications,are
R31034 T74313 T84121 arg2Of colored,are
R95938 T68062 T74313 arg2Of quantifications,colored
R85383 T74313 T62704 arg1Of colored,according
R25408 T82646 T62704 arg2Of to,according
R6191 T78311 T82646 arg2Of key,to
R86230 T78311 T60233 arg1Of key,the
R44949 T7521 T46576 arg1Of glycoproteins,All
R86689 T7521 T49353 arg1Of glycoproteins,were
R23683 T79250 T49353 arg2Of expressed,were
R71973 T7521 T79250 arg2Of glycoproteins,expressed
R19814 T79250 T39461 arg1Of expressed,as
R51360 T17581 T80005 arg2Of derived,was
R67493 T7141 T17581 arg2Of GPC,derived
R24293 T17581 T67465 arg1Of derived,from
R94686 T56154 T67465 arg2Of particles,from
R47738 T56154 T10445 arg1Of particles,virus-like
R16827 T56154 T16557 arg1Of particles,from
R61880 T92146 T16557 arg2Of cells,from
R18138 T92146 T21578 arg1Of cells,Madin-Darby
R79336 T92146 T80613 arg1Of cells,canine
R77697 T92146 T39899 arg1Of cells,kidney
R1683 T92146 T98529 arg1Of cells,II

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T79 89-92 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T80 205-218 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T81 265-270 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T82 360-366 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T83 370-375 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T116 205-218 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T61 20-28 Species denotes MERS-CoV NCBItxid:1335626
T62 37-45 Species denotes SARS-CoV NCBItxid:694009
T63 56-66 Species denotes SARS-CoV-2 NCBItxid:2697049
T64 70-74 Species denotes LASV NCBItxid:11620
T65 89-94 Species denotes HIV-1 NCBItxid:11676
T66 282-286 Species denotes LASV NCBItxid:11620

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T98 0-107 Sentence denotes From left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21).
T99 108-200 Sentence denotes Site-specific N-linked glycan oligomannose quantifications are colored according to the key.
T100 201-376 Sentence denotes All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 360-366 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T47 37-45 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T48 56-66 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
523 75-78 Gene denotes GPC Gene:2995
525 287-290 Gene denotes GPC Gene:2995
526 67-68 Gene denotes S Gene:43740568
527 20-28 Species denotes MERS-CoV Tax:1335626
529 56-66 Species denotes SARS-CoV-2 Tax:2697049
531 70-74 Species denotes LASV Tax:11620
532 282-286 Species denotes LASV Tax:11620
533 122-137 Chemical denotes N-linked glycan
534 138-150 Chemical denotes oligomannose
535 256-264 CellLine denotes HEK 293F CVCL:6642

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2359 75-78 Protein denotes GPC https://www.uniprot.org/uniprot/P03711
T2360 95-98 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3
T2361 205-218 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T2446 256-259 Protein denotes HEK https://www.uniprot.org/uniprot/Q9H2V4|https://www.uniprot.org/uniprot/Q9H2V3|https://www.uniprot.org/uniprot/P29320
T2449 287-290 Protein denotes GPC https://www.uniprot.org/uniprot/P03711

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T5 360-366 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T83 201-204 https://glytoucan.org/Structures/Glycans/G05518TD denotes All

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T98 0-107 Sentence denotes From left to right, MERS-CoV S (10), SARS-CoV-1 S (10), SARS-CoV-2 S, LASV GPC (24), and HIV-1 Env (8, 21).
T99 108-200 Sentence denotes Site-specific N-linked glycan oligomannose quantifications are colored according to the key.
T100 201-376 Sentence denotes All glycoproteins were expressed as soluble trimers in HEK 293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
523 75-78 Gene denotes GPC Gene:2995
524 95-98 Gene denotes Env Gene:100616444
525 287-290 Gene denotes GPC Gene:2995
526 67-68 Gene denotes S Gene:43740568
527 20-28 Species denotes MERS-CoV Tax:1335626
528 37-45 Species denotes SARS-CoV Tax:694009
529 56-66 Species denotes SARS-CoV-2 Tax:2697049
530 89-94 Species denotes HIV-1 Tax:11676
531 70-74 Species denotes LASV Tax:11620
532 282-286 Species denotes LASV Tax:11620
533 122-137 Chemical denotes N-linked glycan
534 138-150 Chemical denotes oligomannose
535 256-264 CellLine denotes HEK 293F CVCL:6642