> top > docs > PMC:7199903 > spans > 14195-15028 > annotations

PMC:7199903 / 14195-15028 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T5 97-104 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T6 170-177 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T75 68-71 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T76 97-104 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T77 130-137 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T78 170-177 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T79 361-369 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T50 334-342 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 348-356 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 461-469 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T85 115-117 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T86 223-225 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T87 283-291 http://purl.obolibrary.org/obo/CLO_0009898 denotes (10), no
T88 308-311 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T147 97-104 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T148 130-137 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T149 170-177 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T150 361-369 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T151 729-731 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T64 375-379 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T65 706-711 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T9240 0-6 RB denotes Highly
T26423 7-12 JJ denotes dense
T31010 13-19 NN denotes glycan
T61332 20-27 NNS denotes shields
T42569 27-28 -COMMA- denotes ,
T84675 29-33 JJ denotes such
T66981 34-36 IN denotes as
T81523 37-42 DT denotes those
T87200 43-51 VBN denotes observed
T40154 52-54 IN denotes on
T65532 55-59 NN denotes LASV
T5772 60-63 NN denotes GPC
T67488 64-67 CC denotes and
T10699 68-73 NN denotes HIV-1
T62172 74-77 NNP denotes Env
T90671 77-78 -COMMA- denotes ,
T16287 79-86 VBP denotes feature
T48112 87-96 JJ denotes so-called
T32762 97-104 NN denotes mannose
T70291 105-113 NNS denotes clusters
T21137 114-115 -LRB- denotes (
T80604 115-117 CD denotes 22
T6972 117-118 -COMMA- denotes ,
T79738 119-121 CD denotes 24
T38967 121-122 -RRB- denotes )
T98752 123-125 IN denotes on
T93512 126-129 DT denotes the
T39612 130-137 NN denotes protein
T9646 138-145 NN denotes surface
T50448 146-147 -LRB- denotes (
T81826 147-151 NN denotes Fig.
T39766 152-153 CD denotes 4
T89772 153-154 -RRB- denotes )
T66450 156-163 IN denotes Whereas
T54192 164-169 JJ denotes small
T75704 170-182 JJ denotes mannose-type
T64679 183-191 NNS denotes clusters
T67961 192-196 VBP denotes have
T50872 197-201 VBN denotes been
T72397 202-215 VBN denotes characterized
T86083 216-218 IN denotes on
T19628 219-222 DT denotes the
T60379 223-225 NN denotes S1
T95927 226-233 NN denotes subunit
T61088 234-236 IN denotes of
T88650 237-243 NNP denotes Middle
T77913 244-248 NNP denotes East
T59650 249-260 JJ denotes respiratory
T56889 261-269 NN denotes syndrome
T75209 270-271 -LRB- denotes (
T65502 271-275 NNS denotes MERS
T47025 275-276 -RRB- denotes )
T38619 276-280 NN denotes –CoV
T85027 281-282 NN denotes S
T41284 283-284 -LRB- denotes (
T20092 284-286 CD denotes 10
T67731 286-287 -RRB- denotes )
T60447 287-288 -COMMA- denotes ,
T26837 289-291 DT denotes no
T36825 292-296 JJ denotes such
T21633 297-307 NN denotes phenomenon
T72717 308-311 VBZ denotes has
T43289 312-316 VBN denotes been
T51132 317-325 VBN denotes observed
T85295 326-329 IN denotes for
T9791 330-333 DT denotes the
T26717 334-344 NN denotes SARS-CoV-1
T27044 345-347 CC denotes or
T2105 348-358 NN denotes SARS-CoV-2
T82926 359-360 NN denotes S
T59746 361-369 NNS denotes proteins
T75148 371-374 DT denotes The
T54305 375-388 JJ denotes site-specific
T98072 389-402 NN denotes glycosylation
T89974 403-411 NN denotes analysis
T24686 412-420 VBN denotes reported
T87402 421-425 RB denotes here
T6472 426-434 VBZ denotes suggests
T51130 435-439 IN denotes that
T65358 440-443 DT denotes the
T44449 444-450 NN denotes glycan
T74101 451-457 NN denotes shield
T43467 458-460 IN denotes of
T56834 461-471 NN denotes SARS-CoV-2
T19380 472-473 NN denotes S
T58633 474-476 VBZ denotes is
T93230 477-487 JJ denotes consistent
T34762 488-492 IN denotes with
T40649 493-498 JJ denotes other
T26331 499-512 NNS denotes coronaviruses
T79087 513-516 CC denotes and
T88865 517-526 RB denotes similarly
T45562 527-535 VBZ denotes exhibits
T4794 536-544 JJ denotes numerous
T90262 545-560 NNS denotes vulnerabilities
T96677 561-571 IN denotes throughout
T25127 572-575 DT denotes the
T33100 576-582 NN denotes glycan
T82801 583-589 NN denotes shield
T15404 590-591 -LRB- denotes (
T44325 591-593 CD denotes 10
T22249 593-594 -RRB- denotes )
T88430 596-600 JJ denotes Last
T44884 600-601 -COMMA- denotes ,
T47301 602-604 PRP denotes we
T38431 605-613 VBD denotes detected
T93001 614-619 NN denotes trace
T59318 620-626 NNS denotes levels
T23777 627-629 IN denotes of
T97663 630-638 JJ denotes O-linked
T9150 639-652 NN denotes glycosylation
T9101 653-655 IN denotes at
T19875 656-669 NN denotes Thr323/Ser325
T53360 670-671 -LRB- denotes (
T44595 671-680 NN denotes T323/S325
T76708 680-681 -RRB- denotes )
T47554 681-682 -COMMA- denotes ,
T13997 683-687 IN denotes with
T37628 688-692 IN denotes over
T46382 693-695 CD denotes 99
T30911 695-696 NN denotes %
T73157 697-699 IN denotes of
T21636 700-705 DT denotes these
T17607 706-711 NNS denotes sites
T16530 712-722 JJ denotes unmodified
T31888 723-724 -LRB- denotes (
T21233 724-727 NN denotes fig
T31805 729-731 NN denotes S4
T7918 731-732 -RRB- denotes )
T49699 732-733 -COMMA- denotes ,
T4878 734-744 VBG denotes suggesting
T67436 745-749 IN denotes that
T16574 750-758 JJ denotes O-linked
T4862 759-772 NN denotes glycosylation
T34118 773-775 IN denotes of
T78710 776-780 DT denotes this
T91351 781-787 NN denotes region
T67334 788-790 VBZ denotes is
T6257 791-798 JJ denotes minimal
T27983 799-803 WRB denotes when
T10765 804-807 DT denotes the
T94953 808-817 NN denotes structure
T41179 818-820 VBZ denotes is
T51038 821-832 JJ denotes native-like
R20228 T26423 T9240 arg1Of dense,Highly
R89571 T61332 T26423 arg1Of shields,dense
R48524 T61332 T31010 arg1Of shields,glycan
R10199 T61332 T42569 arg1Of shields,","
R55975 T66981 T84675 arg1Of as,such
R11072 T61332 T66981 arg1Of shields,as
R30354 T81523 T66981 arg2Of those,as
R64074 T81523 T87200 arg2Of those,observed
R29515 T87200 T40154 arg1Of observed,on
R79085 T67488 T40154 arg2Of and,on
R75808 T64679 T72397 arg2Of clusters,characterized
R34980 T72397 T86083 arg1Of characterized,on
R12505 T85027 T86083 arg2Of S,on
R31920 T95927 T19628 arg1Of subunit,the
R17894 T95927 T60379 arg1Of subunit,S1
R83295 T85027 T95927 arg1Of S,subunit
R93169 T95927 T61088 arg1Of subunit,of
R95196 T94953 T41179 arg1Of structure,is
R82269 T51038 T41179 arg2Of native-like,is
R74655 T94953 T51038 arg1Of structure,native-like
R42147 T5772 T65532 arg1Of GPC,LASV
R6582 T5772 T67488 arg1Of GPC,and
R73752 T62172 T67488 arg2Of Env,and
R24467 T62172 T10699 arg1Of Env,HIV-1
R69077 T16287 T90671 arg1Of feature,","
R66046 T61332 T16287 arg1Of shields,feature
R19719 T70291 T16287 arg2Of clusters,feature
R41011 T70291 T48112 arg1Of clusters,so-called
R18378 T70291 T32762 arg1Of clusters,mannose
R99903 T70291 T21137 arg1Of clusters,(
R11154 T80604 T21137 arg2Of 22,(
R66208 T38967 T21137 arg3Of ),(
R94435 T80604 T6972 arg1Of 22,","
R87842 T79738 T6972 arg2Of 24,","
R17882 T70291 T98752 arg1Of clusters,on
R81137 T9646 T98752 arg2Of surface,on
R91199 T9646 T93512 arg1Of surface,the
R54507 T9646 T39612 arg1Of surface,protein
R73293 T70291 T50448 arg1Of clusters,(
R98958 T81826 T50448 arg2Of Fig.,(
R84320 T89772 T50448 arg3Of ),(
R56628 T81826 T39766 arg1Of Fig.,4
R49323 T51132 T66450 arg1Of observed,Whereas
R56483 T72397 T66450 arg2Of characterized,Whereas
R28990 T64679 T54192 arg1Of clusters,small
R60142 T64679 T75704 arg1Of clusters,mannose-type
R43003 T64679 T67961 arg1Of clusters,have
R97960 T72397 T67961 arg2Of characterized,have
R5307 T64679 T50872 arg1Of clusters,been
R78469 T72397 T50872 arg2Of characterized,been
R57246 T56889 T61088 arg2Of syndrome,of
R69324 T77913 T88650 arg1Of East,Middle
R44960 T56889 T77913 arg1Of syndrome,East
R81536 T56889 T59650 arg1Of syndrome,respiratory
R20253 T56889 T75209 arg1Of syndrome,(
R22259 T65502 T75209 arg2Of MERS,(
R7632 T47025 T75209 arg3Of ),(
R94528 T85027 T38619 arg1Of S,–CoV
R62994 T85027 T41284 arg1Of S,(
R74989 T20092 T41284 arg2Of 10,(
R55359 T67731 T41284 arg3Of ),(
R41904 T51132 T60447 arg1Of observed,","
R56659 T21633 T26837 arg1Of phenomenon,no
R62328 T21633 T36825 arg1Of phenomenon,such
R85946 T21633 T72717 arg1Of phenomenon,has
R30106 T51132 T72717 arg2Of observed,has
R52908 T21633 T43289 arg1Of phenomenon,been
R69651 T51132 T43289 arg2Of observed,been
R93533 T21633 T51132 arg2Of phenomenon,observed
R12880 T51132 T85295 arg1Of observed,for
R70010 T59746 T85295 arg2Of proteins,for
R26917 T59746 T9791 arg1Of proteins,the
R29046 T59746 T26717 arg1Of proteins,SARS-CoV-1
R56504 T26717 T27044 arg1Of SARS-CoV-1,or
R84605 T2105 T27044 arg2Of SARS-CoV-2,or
R66137 T59746 T2105 arg1Of proteins,SARS-CoV-2
R81470 T59746 T82926 arg1Of proteins,S
R84760 T89974 T75148 arg1Of analysis,The
R7558 T89974 T54305 arg1Of analysis,site-specific
R47845 T89974 T98072 arg1Of analysis,glycosylation
R7666 T89974 T24686 arg2Of analysis,reported
R97902 T24686 T87402 arg1Of reported,here
R14856 T89974 T6472 arg1Of analysis,suggests
R49382 T79087 T6472 arg2Of and,suggests
R78090 T79087 T51130 arg1Of and,that
R49422 T74101 T65358 arg1Of shield,the
R86560 T74101 T44449 arg1Of shield,glycan
R83796 T74101 T43467 arg1Of shield,of
R71873 T19380 T43467 arg2Of S,of
R26923 T19380 T56834 arg1Of S,SARS-CoV-2
R85308 T74101 T58633 arg1Of shield,is
R88183 T93230 T58633 arg2Of consistent,is
R36571 T74101 T93230 arg1Of shield,consistent
R21390 T93230 T34762 arg1Of consistent,with
R14625 T26331 T34762 arg2Of coronaviruses,with
R68158 T26331 T40649 arg1Of coronaviruses,other
R65894 T58633 T79087 arg1Of is,and
R28494 T45562 T79087 arg2Of exhibits,and
R44911 T45562 T88865 arg1Of exhibits,similarly
R16891 T74101 T45562 arg1Of shield,exhibits
R16721 T90262 T45562 arg2Of vulnerabilities,exhibits
R81091 T90262 T4794 arg1Of vulnerabilities,numerous
R86637 T45562 T96677 arg1Of exhibits,throughout
R33795 T82801 T96677 arg2Of shield,throughout
R12664 T82801 T25127 arg1Of shield,the
R15185 T82801 T33100 arg1Of shield,glycan
R40826 T82801 T15404 arg1Of shield,(
R19439 T44325 T15404 arg2Of 10,(
R29787 T22249 T15404 arg3Of ),(
R72604 T38431 T44884 arg1Of detected,","
R36737 T47301 T38431 arg1Of we,detected
R91862 T59318 T38431 arg2Of levels,detected
R66682 T30911 T38431 arg3Of %,detected
R72049 T59318 T93001 arg1Of levels,trace
R25464 T59318 T23777 arg1Of levels,of
R22871 T9150 T23777 arg2Of glycosylation,of
R61644 T9150 T97663 arg1Of glycosylation,O-linked
R40310 T59318 T9101 arg1Of levels,at
R41989 T19875 T9101 arg2Of Thr323/Ser325,at
R77433 T19875 T53360 arg1Of Thr323/Ser325,(
R69441 T44595 T53360 arg2Of T323/S325,(
R23420 T76708 T53360 arg3Of ),(
R76302 T38431 T47554 arg1Of detected,","
R77591 T38431 T13997 arg1Of detected,with
R95083 T88430 T13997 arg2Of Last,with
R91853 T46382 T37628 arg1Of 99,over
R33866 T30911 T46382 arg1Of %,99
R21894 T30911 T73157 arg1Of %,of
R4541 T17607 T73157 arg2Of sites,of
R82019 T17607 T21636 arg1Of sites,these
R92566 T17607 T16530 arg2Of sites,unmodified
R10683 T21233 T16530 arg3Of fig,unmodified
R45734 T21233 T31888 arg1Of fig,(
R6800 T31805 T7918 arg1Of S4,)
R86766 T31805 T49699 arg1Of S4,","
R44057 T4878 T49699 arg2Of suggesting,","
R44722 T67334 T4878 arg2Of is,suggesting
R70963 T67334 T67436 arg1Of is,that
R97197 T4862 T16574 arg1Of glycosylation,O-linked
R35289 T4862 T34118 arg1Of glycosylation,of
R25284 T91351 T34118 arg2Of region,of
R27170 T91351 T78710 arg1Of region,this
R8903 T4862 T67334 arg1Of glycosylation,is
R87998 T6257 T67334 arg2Of minimal,is
R99688 T4862 T6257 arg1Of glycosylation,minimal
R72243 T67334 T27983 arg1Of is,when
R95180 T41179 T27983 arg2Of is,when
R32829 T94953 T10765 arg1Of structure,the

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T77 170-177 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T78 361-369 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T74 68-71 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T75 97-104 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T76 130-137 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T112 97-104 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T113 130-137 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T114 170-177 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T115 361-369 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T55 55-59 Species denotes LASV NCBItxid:11620
T56 68-73 Species denotes HIV-1 NCBItxid:11676
T57 271-275 Species denotes MERS NCBItxid:1335626
T58 334-342 Species denotes SARS-CoV NCBItxid:694009
T59 348-358 Species denotes SARS-CoV-2 NCBItxid:2697049
T60 461-471 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T93 0-155 Sentence denotes Highly dense glycan shields, such as those observed on LASV GPC and HIV-1 Env, feature so-called mannose clusters (22, 24) on the protein surface (Fig. 4).
T94 156-370 Sentence denotes Whereas small mannose-type clusters have been characterized on the S1 subunit of Middle East respiratory syndrome (MERS)–CoV S (10), no such phenomenon has been observed for the SARS-CoV-1 or SARS-CoV-2 S proteins.
T95 371-595 Sentence denotes The site-specific glycosylation analysis reported here suggests that the glycan shield of SARS-CoV-2 S is consistent with other coronaviruses and similarly exhibits numerous vulnerabilities throughout the glycan shield (10).
T96 596-833 Sentence denotes Last, we detected trace levels of O-linked glycosylation at Thr323/Ser325 (T323/S325), with over 99% of these sites unmodified (fig. S4), suggesting that O-linked glycosylation of this region is minimal when the structure is native-like.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T44 334-342 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T45 348-358 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T46 461-471 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
489 74-77 Gene denotes Env Gene:100616444
490 60-63 Gene denotes GPC Gene:2995
491 472-473 Gene denotes S Gene:43740568
492 359-360 Gene denotes S Gene:43740568
493 68-73 Species denotes HIV-1 Tax:11676
494 271-280 Species denotes MERS)–CoV Tax:1335626
495 334-342 Species denotes SARS-CoV Tax:694009
496 348-358 Species denotes SARS-CoV-2 Tax:2697049
497 461-471 Species denotes SARS-CoV-2 Tax:2697049
498 499-512 Species denotes coronaviruses Tax:11118
499 55-59 Species denotes LASV Tax:11620
500 13-19 Chemical denotes glycan MESH:D011134
501 97-104 Chemical denotes mannose MESH:D008358
502 170-177 Chemical denotes mannose MESH:D008358
503 444-450 Chemical denotes glycan MESH:D011134
504 576-582 Chemical denotes glycan MESH:D011134
505 656-662 Chemical denotes Thr323
506 663-669 Chemical denotes Ser325
507 237-269 Disease denotes Middle East respiratory syndrome MESH:D018352

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2324 60-63 Protein denotes GPC https://www.uniprot.org/uniprot/P03711
T2325 74-77 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3
T2326 359-369 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T37 389-402 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T38 639-652 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T39 759-772 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T35 389-402 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T36 639-652 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T37 759-772 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T41 389-402 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T42 630-652 http://purl.obolibrary.org/obo/GO_0006493 denotes O-linked glycosylation
T43 639-652 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T44 750-772 http://purl.obolibrary.org/obo/GO_0006493 denotes O-linked glycosylation
T45 759-772 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T81 97-104 http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname denotes mannose
T82 170-177 http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname denotes mannose

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T93 0-155 Sentence denotes Highly dense glycan shields, such as those observed on LASV GPC and HIV-1 Env, feature so-called mannose clusters (22, 24) on the protein surface (Fig. 4).
T94 156-370 Sentence denotes Whereas small mannose-type clusters have been characterized on the S1 subunit of Middle East respiratory syndrome (MERS)–CoV S (10), no such phenomenon has been observed for the SARS-CoV-1 or SARS-CoV-2 S proteins.
T95 371-595 Sentence denotes The site-specific glycosylation analysis reported here suggests that the glycan shield of SARS-CoV-2 S is consistent with other coronaviruses and similarly exhibits numerous vulnerabilities throughout the glycan shield (10).
T96 596-833 Sentence denotes Last, we detected trace levels of O-linked glycosylation at Thr323/Ser325 (T323/S325), with over 99% of these sites unmodified (fig. S4), suggesting that O-linked glycosylation of this region is minimal when the structure is native-like.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
489 74-77 Gene denotes Env Gene:100616444
490 60-63 Gene denotes GPC Gene:2995
491 472-473 Gene denotes S Gene:43740568
492 359-360 Gene denotes S Gene:43740568
493 68-73 Species denotes HIV-1 Tax:11676
494 271-280 Species denotes MERS)–CoV Tax:1335626
495 334-342 Species denotes SARS-CoV Tax:694009
496 348-358 Species denotes SARS-CoV-2 Tax:2697049
497 461-471 Species denotes SARS-CoV-2 Tax:2697049
498 499-512 Species denotes coronaviruses Tax:11118
499 55-59 Species denotes LASV Tax:11620
500 13-19 Chemical denotes glycan MESH:D011134
501 97-104 Chemical denotes mannose MESH:D008358
502 170-177 Chemical denotes mannose MESH:D008358
503 444-450 Chemical denotes glycan MESH:D011134
504 576-582 Chemical denotes glycan MESH:D011134
505 656-662 Chemical denotes Thr323
506 663-669 Chemical denotes Ser325
507 237-269 Disease denotes Middle East respiratory syndrome MESH:D018352