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PMC:7199903 / 12887-13027 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T66 62-70 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T67 74-77 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T76 136-138 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T128 62-70 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T129 123-130 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T28276 0-3 IN denotes For
T16362 4-11 NN denotes example
T16646 11-12 -COMMA- denotes ,
T86047 13-16 CD denotes one
T49490 17-19 IN denotes of
T73507 20-23 DT denotes the
T59944 24-28 RBS denotes most
T25572 29-36 RB denotes densely
T28586 37-49 VBN denotes glycosylated
T97814 50-55 JJ denotes viral
T45720 56-61 NN denotes spike
T63316 62-70 NNS denotes proteins
T67493 71-73 VBZ denotes is
T5107 74-79 NN denotes HIV-1
T33765 80-83 NN denotes Env
T65352 83-84 -COMMA- denotes ,
T93662 85-90 WDT denotes which
T82020 91-99 VBZ denotes exhibits
T54543 100-103 CD denotes ~60
T27723 103-104 NN denotes %
T66901 105-122 JJ denotes oligomannose-type
T75833 123-130 NNS denotes glycans
T67860 131-132 -LRB- denotes (
T96850 132-134 CD denotes 21
T16706 134-135 -COMMA- denotes ,
T77788 136-138 CD denotes 34
T37032 138-139 -RRB- denotes )
R64838 T67493 T28276 arg1Of is,For
R66091 T16362 T28276 arg2Of example,For
R52990 T67493 T16646 arg1Of is,","
R79975 T86047 T49490 arg1Of one,of
R17404 T63316 T49490 arg2Of proteins,of
R43321 T63316 T73507 arg1Of proteins,the
R88890 T25572 T59944 arg1Of densely,most
R11827 T28586 T25572 arg1Of glycosylated,densely
R17573 T63316 T28586 arg1Of proteins,glycosylated
R17686 T63316 T97814 arg1Of proteins,viral
R66791 T63316 T45720 arg1Of proteins,spike
R58603 T86047 T67493 arg1Of one,is
R25150 T33765 T67493 arg2Of Env,is
R34663 T33765 T5107 arg1Of Env,HIV-1
R52209 T33765 T65352 arg1Of Env,","
R33489 T33765 T93662 arg1Of Env,which
R86704 T33765 T82020 arg1Of Env,exhibits
R7415 T75833 T82020 arg2Of glycans,exhibits
R41910 T75833 T54543 arg1Of glycans,~60
R72236 T54543 T27723 arg1Of ~60,%
R69478 T75833 T66901 arg1Of glycans,oligomannose-type
R80841 T75833 T67860 arg1Of glycans,(
R32128 T96850 T67860 arg2Of 21,(
R2357 T37032 T67860 arg3Of ),(
R64521 T96850 T16706 arg1Of 21,","
R19069 T77788 T16706 arg2Of 34,","

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T65 62-70 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T66 74-77 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T97 62-70 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T98 123-130 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T49 74-79 Species denotes HIV-1 NCBItxid:11676

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T86 0-140 Sentence denotes For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34).

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
424 56-61 Gene denotes spike Gene:43740568
425 80-83 Gene denotes Env Gene:100616444
429 74-79 Species denotes HIV-1 Tax:11676
435 105-117 Chemical denotes oligomannose
436 123-130 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2201 56-70 Protein denotes spike proteins https://www.uniprot.org/uniprot/P31340
T2202 80-83 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T86 0-140 Sentence denotes For example, one of the most densely glycosylated viral spike proteins is HIV-1 Env, which exhibits ~60% oligomannose-type glycans (21, 34).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
424 56-61 Gene denotes spike Gene:43740568
425 80-83 Gene denotes Env Gene:100616444
429 74-79 Species denotes HIV-1 Tax:11676
435 105-117 Chemical denotes oligomannose
436 123-130 Chemical denotes glycans MESH:D011134