PMC:7199903 / 11911-12420 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T61","span":{"begin":123,"end":136},"obj":"Body_part"},{"id":"T62","span":{"begin":199,"end":202},"obj":"Body_part"},{"id":"T63","span":{"begin":364,"end":371},"obj":"Body_part"}],"attributes":[{"id":"A61","pred":"fma_id","subj":"T61","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A62","pred":"fma_id","subj":"T62","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A63","pred":"fma_id","subj":"T63","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T47","span":{"begin":289,"end":297},"obj":"Disease"}],"attributes":[{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T70","span":{"begin":68,"end":70},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T71","span":{"begin":75,"end":77},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T72","span":{"begin":75,"end":77},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T117","span":{"begin":44,"end":51},"obj":"Chemical"},{"id":"T118","span":{"begin":75,"end":77},"obj":"Chemical"},{"id":"T119","span":{"begin":123,"end":136},"obj":"Chemical"},{"id":"T120","span":{"begin":234,"end":241},"obj":"Chemical"},{"id":"T121","span":{"begin":364,"end":371},"obj":"Chemical"}],"attributes":[{"id":"A117","pred":"chebi_id","subj":"T117","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A118","pred":"chebi_id","subj":"T118","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A119","pred":"chebi_id","subj":"T119","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A120","pred":"chebi_id","subj":"T120","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A121","pred":"chebi_id","subj":"T121","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

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note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T60","span":{"begin":123,"end":136},"obj":"Body_part"},{"id":"T61","span":{"begin":199,"end":202},"obj":"Body_part"},{"id":"T62","span":{"begin":364,"end":371},"obj":"Body_part"}],"attributes":[{"id":"A62","pred":"fma_id","subj":"T62","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A60","pred":"fma_id","subj":"T60","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A61","pred":"fma_id","subj":"T61","obj":"http://purl.org/sig/ont/fma/fma278683"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T89","span":{"begin":44,"end":51},"obj":"Chemical"},{"id":"T90","span":{"begin":123,"end":136},"obj":"Chemical"},{"id":"T91","span":{"begin":234,"end":241},"obj":"Chemical"},{"id":"T92","span":{"begin":364,"end":371},"obj":"Chemical"}],"attributes":[{"id":"A92","pred":"chebi_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A89","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A91","pred":"chebi_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A90","pred":"chebi_id","subj":"T90","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T47","span":{"begin":199,"end":204},"obj":"Species"},{"id":"T48","span":{"begin":289,"end":299},"obj":"Species"}],"attributes":[{"id":"A48","pred":"ncbi_taxonomy_id","subj":"T48","obj":"NCBItxid:2697049"},{"id":"A47","pred":"ncbi_taxonomy_id","subj":"T47","obj":"NCBItxid:11676"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T80","span":{"begin":0,"end":87},"obj":"Sentence"},{"id":"T81","span":{"begin":88,"end":285},"obj":"Sentence"},{"id":"T82","span":{"begin":286,"end":509},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T41","span":{"begin":289,"end":299},"obj":"Disease"}],"attributes":[{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"395","span":{"begin":205,"end":208},"obj":"Gene"},{"id":"396","span":{"begin":300,"end":301},"obj":"Gene"},{"id":"397","span":{"begin":199,"end":204},"obj":"Species"},{"id":"398","span":{"begin":289,"end":299},"obj":"Species"},{"id":"399","span":{"begin":26,"end":38},"obj":"Chemical"},{"id":"400","span":{"begin":44,"end":51},"obj":"Chemical"},{"id":"401","span":{"begin":161,"end":167},"obj":"Chemical"},{"id":"402","span":{"begin":216,"end":228},"obj":"Chemical"},{"id":"403","span":{"begin":234,"end":241},"obj":"Chemical"},{"id":"404","span":{"begin":307,"end":319},"obj":"Chemical"},{"id":"405","span":{"begin":410,"end":416},"obj":"Chemical"}],"attributes":[{"id":"A397","pred":"pubann:denotes","subj":"397","obj":"Tax:11676"},{"id":"A395","pred":"pubann:denotes","subj":"395","obj":"Gene:100616444"},{"id":"A400","pred":"pubann:denotes","subj":"400","obj":"MESH:D011134"},{"id":"A403","pred":"pubann:denotes","subj":"403","obj":"MESH:D011134"},{"id":"A396","pred":"pubann:denotes","subj":"396","obj":"Gene:43740568"},{"id":"A405","pred":"pubann:denotes","subj":"405","obj":"MESH:D011134"},{"id":"A398","pred":"pubann:denotes","subj":"398","obj":"Tax:2697049"},{"id":"A401","pred":"pubann:denotes","subj":"401","obj":"MESH:D011134"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

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https://www.uniprot.org/uniprot/Q49IT9"},{"id":"A1995","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/Q49IT8"},{"id":"A1996","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/Q49AV0"},{"id":"A1997","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/Q0GBY1"},{"id":"A1998","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/Q0GBX6"},{"id":"A1999","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/Q08089"},{"id":"A2000","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P32595"},{"id":"A2001","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P32550"},{"id":"A2002","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P19462"},{"id":"A2003","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P16288"},{"id":"A2004","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P15199"},{"id":"A2005","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P13180"},{"id":"A2006","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P0C572"},{"id":"A2007","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P08667"},{"id":"A2008","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P08163"},{"id":"A2009","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P07923"},{"id":"A2010","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P04884"},{"id":"A2011","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P04883"},{"id":"A2012","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P04882"},{"id":"A2013","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P03524"},{"id":"A2014","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/P03522"},{"id":"A2015","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/O92284"},{"id":"A2016","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/O56677"},{"id":"A2017","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/O10236"},{"id":"A2018","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/J7HBH4"},{"id":"A2019","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/D8V075"},{"id":"A2020","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A7WNB3"},{"id":"A2021","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A4UHQ6"},{"id":"A2022","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A4UHQ1"},{"id":"A2023","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A3RM22"},{"id":"A2024","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A3F5R8"},{"id":"A2025","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A3F5R3"},{"id":"A2026","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A3F5Q8"},{"id":"A2027","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A3F5N3"},{"id":"A2028","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A3F5M3"},{"id":"A2029","pred":"uniprot_id","subj":"T1945","obj":"https://www.uniprot.org/uniprot/A3F5L8"},{"id":"A2030","pred":"uniprot_id","subj":"T2030","obj":"https://www.uniprot.org/uniprot/C1JJY3"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T80","span":{"begin":0,"end":87},"obj":"Sentence"},{"id":"T81","span":{"begin":88,"end":285},"obj":"Sentence"},{"id":"T82","span":{"begin":286,"end":509},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"395","span":{"begin":205,"end":208},"obj":"Gene"},{"id":"396","span":{"begin":300,"end":301},"obj":"Gene"},{"id":"397","span":{"begin":199,"end":204},"obj":"Species"},{"id":"398","span":{"begin":289,"end":299},"obj":"Species"},{"id":"399","span":{"begin":26,"end":38},"obj":"Chemical"},{"id":"400","span":{"begin":44,"end":51},"obj":"Chemical"},{"id":"401","span":{"begin":161,"end":167},"obj":"Chemical"},{"id":"402","span":{"begin":216,"end":228},"obj":"Chemical"},{"id":"403","span":{"begin":234,"end":241},"obj":"Chemical"},{"id":"404","span":{"begin":307,"end":319},"obj":"Chemical"},{"id":"405","span":{"begin":410,"end":416},"obj":"Chemical"}],"attributes":[{"id":"A395","pred":"tao:has_database_id","subj":"395","obj":"Gene:100616444"},{"id":"A396","pred":"tao:has_database_id","subj":"396","obj":"Gene:43740568"},{"id":"A397","pred":"tao:has_database_id","subj":"397","obj":"Tax:11676"},{"id":"A398","pred":"tao:has_database_id","subj":"398","obj":"Tax:2697049"},{"id":"A400","pred":"tao:has_database_id","subj":"400","obj":"MESH:D011134"},{"id":"A401","pred":"tao:has_database_id","subj":"401","obj":"MESH:D011134"},{"id":"A403","pred":"tao:has_database_id","subj":"403","obj":"MESH:D011134"},{"id":"A405","pred":"tao:has_database_id","subj":"405","obj":"MESH:D011134"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"We note the dispersion of oligomannose-type glycans across both the S1 and S2 subunits. This is in contrast to other viral glycoproteins; for example, the dense glycan clusters in several strains of HIV-1 Env induce oligomannose-type glycans that are recognized by antibodies (32, 33). In SARS-CoV-2 S, the oligomannose-type structures are likely protected by the protein component, as exemplified by the N234 glycan, which is partially sandwiched between the N-terminal and receptor binding domains (Fig. 3)."}