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PMC:7199903 / 10587-10786 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T57 72-84 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T43 59-67 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T109 72-84 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T110 90-92 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T38375 2-5 VBP denotes are
T76680 6-13 VBN denotes modeled
T71277 14-18 IN denotes onto
T42592 19-22 DT denotes the
T58755 23-32 NN denotes prefusion
T93802 33-42 NN denotes structure
T87665 43-45 IN denotes of
T46332 46-49 DT denotes the
T49295 50-58 JJ denotes trimeric
T44071 59-69 NN denotes SARS-CoV-2
T10101 70-71 NN denotes S
T92216 72-84 NN denotes glycoprotein
T96919 85-86 -LRB- denotes (
T52860 86-89 NN denotes PDB
T6088 90-92 NN denotes ID
T81444 93-97 NN denotes 6VSB
T67362 97-98 -RRB- denotes )
T96733 99-100 -LRB- denotes (
T9353 100-101 CD denotes 4
T15280 101-102 -RRB- denotes )
T94320 102-103 -COMMA- denotes ,
T9342 104-108 IN denotes with
T91654 109-112 CD denotes one
T93537 113-116 NN denotes RBD
T60521 117-119 IN denotes in
T62722 120-123 DT denotes the
T68682 124-128 JJ denotes “up”
T38405 129-141 NN denotes conformation
T28926 142-145 CC denotes and
T31080 146-149 DT denotes the
T32013 150-155 JJ denotes other
T78420 156-159 CD denotes two
T75042 160-164 NNS denotes RBDs
T48759 165-167 IN denotes in
T62164 168-171 DT denotes the
T16991 172-178 JJ denotes “down”
T18108 179-191 NN denotes conformation
T22534 193-196 DT denotes The
R42981 T76680 T38375 arg2Of modeled,are
R61486 T76680 T71277 arg1Of modeled,onto
R90991 T93802 T71277 arg2Of structure,onto
R97654 T93802 T42592 arg1Of structure,the
R48686 T93802 T58755 arg1Of structure,prefusion
R65315 T93802 T87665 arg1Of structure,of
R34396 T92216 T87665 arg2Of glycoprotein,of
R43924 T92216 T46332 arg1Of glycoprotein,the
R84895 T92216 T49295 arg1Of glycoprotein,trimeric
R77823 T92216 T44071 arg1Of glycoprotein,SARS-CoV-2
R3257 T92216 T10101 arg1Of glycoprotein,S
R8247 T92216 T96919 arg1Of glycoprotein,(
R86159 T81444 T96919 arg2Of 6VSB,(
R93150 T67362 T96919 arg3Of ),(
R86373 T81444 T52860 arg1Of 6VSB,PDB
R90153 T81444 T6088 arg1Of 6VSB,ID
R12361 T92216 T96733 arg1Of glycoprotein,(
R82041 T9353 T96733 arg2Of 4,(
R33812 T15280 T96733 arg3Of ),(
R4391 T92216 T94320 arg1Of glycoprotein,","
R42841 T92216 T9342 arg1Of glycoprotein,with
R44400 T93537 T9342 arg2Of RBD,with
R14066 T93537 T91654 arg1Of RBD,one
R88210 T93537 T60521 arg1Of RBD,in
R5525 T28926 T60521 arg2Of and,in
R44142 T38405 T62722 arg1Of conformation,the
R53132 T38405 T68682 arg1Of conformation,“up”
R82337 T38405 T28926 arg1Of conformation,and
R7764 T75042 T28926 arg2Of RBDs,and
R59769 T75042 T31080 arg1Of RBDs,the
R85172 T75042 T32013 arg1Of RBDs,other
R78524 T75042 T78420 arg1Of RBDs,two
R33481 T93537 T48759 arg1Of RBD,in
R31813 T18108 T48759 arg2Of conformation,in
R49961 T18108 T62164 arg1Of conformation,the
R68061 T18108 T16991 arg1Of conformation,“down”

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T56 72-84 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T83 72-84 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T42 59-69 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 59-69 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
357 70-71 Gene denotes S Gene:43740568
358 59-69 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1234 70-84 Protein denotes S glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T1333 113-116 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
357 70-71 Gene denotes S Gene:43740568
358 59-69 Species denotes SARS-CoV-2 Tax:2697049