PMC:7199903 / 10094-10343 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T55","span":{"begin":57,"end":64},"obj":"Body_part"},{"id":"T56","span":{"begin":66,"end":73},"obj":"Body_part"}],"attributes":[{"id":"A55","pred":"fma_id","subj":"T55","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A56","pred":"fma_id","subj":"T56","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T40","span":{"begin":44,"end":52},"obj":"Disease"}],"attributes":[{"id":"A40","pred":"mondo_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T101","span":{"begin":15,"end":17},"obj":"Chemical"},{"id":"T102","span":{"begin":57,"end":64},"obj":"Chemical"},{"id":"T103","span":{"begin":66,"end":73},"obj":"Chemical"},{"id":"T104","span":{"begin":90,"end":92},"obj":"Chemical"}],"attributes":[{"id":"A101","pred":"chebi_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/CHEBI_73507"},{"id":"A102","pred":"chebi_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A103","pred":"chebi_id","subj":"T103","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A104","pred":"chebi_id","subj":"T104","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

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the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T54","span":{"begin":57,"end":64},"obj":"Body_part"},{"id":"T55","span":{"begin":66,"end":73},"obj":"Body_part"}],"attributes":[{"id":"A54","pred":"fma_id","subj":"T54","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A55","pred":"fma_id","subj":"T55","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T78","span":{"begin":57,"end":64},"obj":"Chemical"},{"id":"T79","span":{"begin":66,"end":73},"obj":"Chemical"}],"attributes":[{"id":"A78","pred":"chebi_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A79","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T39","span":{"begin":44,"end":54},"obj":"Species"}],"attributes":[{"id":"A39","pred":"ncbi_taxonomy_id","subj":"T39","obj":"NCBItxid:2697049"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T69","span":{"begin":0,"end":249},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T34","span":{"begin":44,"end":54},"obj":"Disease"}],"attributes":[{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"336","span":{"begin":158,"end":163},"obj":"Gene"},{"id":"337","span":{"begin":55,"end":64},"obj":"Gene"},{"id":"338","span":{"begin":44,"end":54},"obj":"Species"},{"id":"339","span":{"begin":146,"end":157},"obj":"Species"}],"attributes":[{"id":"A336","pred":"pubann:denotes","subj":"336","obj":"Gene:43740568"},{"id":"A337","pred":"pubann:denotes","subj":"337","obj":"Gene:43740568"},{"id":"A338","pred":"pubann:denotes","subj":"338","obj":"Tax:2697049"},{"id":"A339","pred":"pubann:denotes","subj":"339","obj":"Tax:11118"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-UniProt","denotations":[{"id":"T1201","span":{"begin":55,"end":64},"obj":"Protein"}],"attributes":[{"id":"A1201","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9UIP0"},{"id":"A1202","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9UIN9"},{"id":"A1203","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9UIN8"},{"id":"A1204","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9UIN7"},{"id":"A1205","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9UIN6"},{"id":"A1206","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9UBH8"},{"id":"A1207","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NRH8"},{"id":"A1208","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NRH7"},{"id":"A1209","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NRH6"},{"id":"A1210","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NRH5"},{"id":"A1211","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NRH4"},{"id":"A1212","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NPG5"},{"id":"A1213","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NPE0"},{"id":"A1214","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q9NP52"},{"id":"A1215","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q95IF9"},{"id":"A1216","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q8N5P3"},{"id":"A1217","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q8IZU6"},{"id":"A1218","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q8IZU5"},{"id":"A1219","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q8IZU4"},{"id":"A1220","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q86Z04"},{"id":"A1221","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q7YR44"},{"id":"A1222","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q7LA71"},{"id":"A1223","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q7LA70"},{"id":"A1224","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q5STD2"},{"id":"A1225","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q5SQ85"},{"id":"A1226","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q1XI16"},{"id":"A1227","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q1XI12"},{"id":"A1228","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/Q15517"},{"id":"A1229","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/O43509"},{"id":"A1230","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/O19084"},{"id":"A1231","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/B0UYZ7"},{"id":"A1232","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/B0S7V2"},{"id":"A1233","pred":"uniprot_id","subj":"T1201","obj":"https://www.uniprot.org/uniprot/A5A6L9"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-PD-GO-BP-0","denotations":[{"id":"T33","span":{"begin":118,"end":131},"obj":"http://purl.obolibrary.org/obo/GO_0070085"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sample-GO-BP","denotations":[{"id":"T31","span":{"begin":118,"end":131},"obj":"http://purl.obolibrary.org/obo/GO_0070085"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T36","span":{"begin":118,"end":131},"obj":"http://purl.obolibrary.org/obo/GO_0070085"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T69","span":{"begin":0,"end":249},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"336","span":{"begin":158,"end":163},"obj":"Gene"},{"id":"337","span":{"begin":55,"end":64},"obj":"Gene"},{"id":"338","span":{"begin":44,"end":54},"obj":"Species"},{"id":"339","span":{"begin":146,"end":157},"obj":"Species"}],"attributes":[{"id":"A336","pred":"tao:has_database_id","subj":"336","obj":"Gene:43740568"},{"id":"A337","pred":"tao:has_database_id","subj":"337","obj":"Gene:43740568"},{"id":"A338","pred":"tao:has_database_id","subj":"338","obj":"Tax:2697049"},{"id":"A339","pred":"tao:has_database_id","subj":"339","obj":"Tax:11118"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Using the cryo-EM structure of the trimeric SARS-CoV-2 S protein [Protein Data Bank (PDB) ID 6VSB] (4), we mapped the glycosylation status of the coronavirus spike mimetic onto the experimentally determined three-dimensional (3D) structure (Fig. 3)."}