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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 8-16 Disease denotes COVID-19 MESH:C000657245
5 103-127 Disease denotes coronavirus disease 2019 MESH:C000657245
6 129-137 Disease denotes COVID-19 MESH:C000657245
7 562-570 Disease denotes COVID-19 MESH:C000657245
9 908-916 Disease denotes COVID-19 MESH:C000657245
11 1104-1111 Disease denotes CHANGES MESH:D009402
15 1718-1726 Species denotes patients Tax:9606
16 1250-1258 Disease denotes COVID-19 MESH:C000657245
17 1709-1717 Disease denotes COVID-19 MESH:C000657245
19 1987-1995 Disease denotes COVID-19 MESH:C000657245
22 4066-4075 Disease denotes pressured MESH:D006973
23 4198-4213 Disease denotes disrupting rise MESH:D019958
27 4404-4412 Disease denotes COVID-19 MESH:C000657245
28 4466-4474 Disease denotes COVID-19 MESH:C000657245
29 4525-4530 Disease denotes COVID MESH:C000657245
32 4909-4914 Gene denotes trail Gene:8743
33 4950-4958 Disease denotes COVID-19 MESH:C000657245
35 5449-5457 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 8-16 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 103-127 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 129-137 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 562-570 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 908-916 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 1250-1258 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 1709-1717 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 1987-1995 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 4404-4412 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 4466-4474 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 4950-4958 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 5449-5457 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 167-170 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 181-182 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 350-351 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 513-514 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 783-788 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T6 852-857 http://purl.obolibrary.org/obo/UBERON_0001456 denotes faced
T7 1074-1087 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T8 1299-1300 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1351-1352 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1441-1442 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2409-2416 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T12 2960-2961 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 3272-3273 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 3454-3457 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 3470-3471 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 4089-4090 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 4184-4185 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 4328-4331 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T19 4337-4338 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 4417-4418 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 4502-4509 http://purl.obolibrary.org/obo/CLO_0009609 denotes wishing
T22 4549-4559 http://purl.obolibrary.org/obo/UBERON_0001456 denotes are facing
T23 5110-5111 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 5302-5303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 5304-5309 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T26 5617-5630 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T27 6614-6621 http://purl.obolibrary.org/obo/OBI_0000968 denotes devices

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 0-6 Chemical denotes Letter http://purl.obolibrary.org/obo/CHEBI_6446
T2 4290-4301 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T3 5173-5184 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T4 6366-6377 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T5 6593-6598 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 313-321 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T2 433-441 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T3 1461-1474 http://purl.obolibrary.org/obo/GO_0006412 denotes translational
T4 2226-2234 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T5 3392-3405 http://purl.obolibrary.org/obo/GO_0006412 denotes translational
T6 6162-6170 http://purl.obolibrary.org/obo/GO_0007612 denotes learning

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-67 Sentence denotes Letter: COVID-19 Impact on the Medical Student Path to Neurosurgery
T2 69-83 Sentence denotes To the Editor:
T3 84-227 Sentence denotes In the wake of the coronavirus disease 2019 (COVID-19) pandemic, medical education has undergone a rapid fundamental, albeit temporary, change.
T4 228-452 Sentence denotes New obstacles have arisen for medical educators in the process of ensuring continued learning for medical students during a time when students have been removed from clinical work and relegated to virtual learning platforms.
T5 453-597 Sentence denotes For medical students interested in pursuing neurosurgery as a subspecialty, educational policies surrounding COVID-19 present unique challenges.
T6 598-926 Sentence denotes To combat limitations in opportunities for observation and participation in clinical and operative neurosurgery, it is essential to strategize methods to keep students engaged with the field.1 In the following discussion, we highlight specific obstacles faced by neurosurgery-bound medical students during the COVID-19 pandemic.
T7 927-1088 Sentence denotes Additionally, we highlight ways in which students are being proactive during this time and offer solutions for medical educators and neurosurgical organizations.
T8 1090-1111 Sentence denotes INSTITUTIONAL CHANGES
T9 1112-1282 Sentence denotes In early March 2020, Weill Cornell Medicine suspended all medical student teaching in clinical care settings amidst the continued rise in COVID-19 cases in New York City.
T10 1283-1403 Sentence denotes This ushered in a transformation of the core clinical curriculum to a remote, online platform for students of all years.
T11 1404-1757 Sentence denotes Institutional policies also mandated a halt of basic and translational science research in laboratories for experiments considered “nonessential.” Virtual clinical electives within different medical specialties became available for students currently in their clerkship year to participate in the care of COVID-19 patients and remain clinically engaged.
T12 1758-1893 Sentence denotes These were coupled with independent research electives for students already working on clinical research projects with faculty mentors.
T13 1895-1925 Sentence denotes IMPACT ON CLINICAL EXPERIENCES
T14 1926-2203 Sentence denotes For preclinical medical students interested in neurosurgery, COVID-19 policies have restricted opportunities to interact with the department in an effort to seek out potential mentors and to explore neurosurgical interests in the operating room, clinic, and the research space.
T15 2204-2341 Sentence denotes However, neuroanatomy learning modules, which traditionally have been offered virtually at our institution, remain relatively unaffected.
T16 2342-2629 Sentence denotes The clerkship year is crucial for accruing clinical experience and testing interests in various clinical subspecialties.2,3 Students in their clinical year have had surgery, neurology, and other clerkships either short-ended or postponed indefinitely, limiting vital clinical experience.
T17 2630-2781 Sentence denotes Replacement with virtual clinical electives understandably cannot fully help students acquire surgical skills or neurosurgery-specific clinical skills.
T18 2782-2877 Sentence denotes In light of these new policies, there have been discussions towards changing clerkship grading.
T19 2878-3060 Sentence denotes In particular, the National Board of Medical Examiners shelf exams, which make up a large component of overall clerkship grades, will now be administered remotely on an honor system.
T20 3061-3224 Sentence denotes With potential limitations on accountability during this process, there is uncertainty surrounding the validity of exam scores and, consequently, clerkship grades.
T21 3225-3321 Sentence denotes Some institutions have also begun implementing a pass/fail grading system for these shelf exams.
T22 3323-3368 Sentence denotes IMPACT ON NEUROSURGICAL RESEARCH PRODUCTIVITY
T23 3369-3504 Sentence denotes The pause on basic and translational science for medical students at our institution has resulted in a shift towards clinical research.
T24 3505-3696 Sentence denotes In response, many postclerkship, third-year medical students currently conducting wet-lab research have had to modify their projects or adapt entirely new ones that can be completed remotely.
T25 3697-3873 Sentence denotes Additionally, the curricular changes created uncertainty for first-year students surrounding neurosurgical research opportunities for the summer between first and second years.
T26 3874-4006 Sentence denotes These restrictions might act to halt the momentum that students might otherwise be able to build early on in their academic careers.
T27 4007-4162 Sentence denotes Alternatively, an increasing number of students might feel pressured to undertake a research year to make up for the lost opportunities during these times.
T28 4163-4308 Sentence denotes If such is the case, a potentially disrupting rise in the number of residency applications may follow in next year's residency application cycle.
T29 4309-4413 Sentence denotes By contrast, there has been a surge of research questions and projects specifically related to COVID-19.
T30 4414-4640 Sentence denotes As a natural consequence of the increased amount of COVID-19-related research, students wishing to propose non-COVID research projects are facing dramatically increased processing times by the Institutional Review Board (IRB).
T31 4641-4815 Sentence denotes Hence, those without an existing IRB approval might feel more inclined to pursue projects that can proceed without such approval, such as meta-analyses and literature review.
T32 4817-4866 Sentence denotes IMPACT ON PREPARATION FOR NEUROSURGICAL RESIDENCY
T33 4867-4969 Sentence denotes Subinternship rotations and the interview trail are both threatened by the current COVID-19 landscape.
T34 4970-5133 Sentence denotes In addition to the lost letters of recommendation, cancelation of subinternships removes the opportunity for medical students to impress in a clinical environment.
T35 5134-5348 Sentence denotes Elimination of subinternships from the application process can thus be expected to be advantageous to those with “numerical” advantages, which may prove problematic in a field where the intangibles are so valuable.
T36 5350-5384 Sentence denotes ADAPTING TO CHANGING CIRCUMSTANCES
T37 5385-5549 Sentence denotes We conclude with potential solutions to issues being exposed by COVID-19 in neurosurgical education, some of which are already being implemented at our institution.
T38 5550-5748 Sentence denotes First, it is important for academic institutions and neurosurgical organizations to understand the impact that this pandemic is having on students in real-time to help make effective policy changes.
T39 5749-5916 Sentence denotes Second, we encourage medical student neurosurgery interest groups to capitalize on increased availability of now-remote students to form collaborative research groups.
T40 5917-6054 Sentence denotes Third, neurosurgical communities should utilize virtual platforms to offer educational and mentorship opportunities for medical students.
T41 6055-6226 Sentence denotes Inclusion of neurosurgery-minded students in virtual department educational meetings would enhance student learning and ensure accessibility of the department to students.
T42 6227-6316 Sentence denotes Lastly, many elements of preparedness programs4 could be converted into virtual webinars.
T43 6317-6498 Sentence denotes For example, webinars on neurosurgical residency application and subinternship preparation strategies by program directors could offer key insights to medical students of all years.
T44 6500-6511 Sentence denotes Disclosures
T45 6512-6648 Sentence denotes The authors have no personal, financial, or institutional interest in any of the drugs, materials, or devices described in this article.
T46 6650-6665 Sentence denotes Acknowledgments
T47 6666-6734 Sentence denotes The authors are grateful to Dr Oyesiku for his guidance and support.

2_test

Id Subject Object Predicate Lexical cue
32355961-26711669-76252769 2462-2463 26711669 denotes 2
32355961-26361323-76252770 2464-2465 26361323 denotes 3
32355961-30947014-76252771 6273-6274 30947014 denotes 4