PMC:7195088 / 54054-54728
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1590 | 147-155 | Species | denotes | patients | Tax:9606 |
| 1591 | 228-236 | Species | denotes | patients | Tax:9606 |
| 1592 | 313-321 | Species | denotes | patients | Tax:9606 |
| 1593 | 520-541 | Species | denotes | Staphylococcus aureus | Tax:1280 |
| 1594 | 589-613 | Species | denotes | Streptococcus pneumoniae | Tax:1313 |
| 1595 | 615-637 | Species | denotes | Haemophilus influenzae | Tax:727 |
| 1596 | 642-662 | Species | denotes | group A streptococci | Tax:36470 |
| 1597 | 421-430 | Species | denotes | influenza | Tax:11520 |
| 1598 | 553-564 | Chemical | denotes | methicillin | MESH:D008712 |
| 1599 | 67-76 | Disease | denotes | pneumonia | MESH:D011014 |
| 1600 | 132-146 | Disease | denotes | critically ill | MESH:D016638 |
| 1601 | 183-202 | Disease | denotes | bacterial infection | MESH:D001424 |
| 1602 | 268-287 | Disease | denotes | bacterial pneumonia | MESH:D016920 |
| 1603 | 357-372 | Disease | denotes | virus infection | MESH:D001102 |
| 1604 | 400-409 | Disease | denotes | mortality | MESH:D003643 |
| 1605 | 469-478 | Disease | denotes | pneumonia | MESH:D011014 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T88 | 67-76 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T89 | 278-287 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T90 | 469-478 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T91 | 603-613 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T288 | 67-76 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T289 | 183-202 | Disease | denotes | bacterial infection | http://purl.obolibrary.org/obo/MONDO_0005113 |
| T290 | 193-202 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T291 | 268-287 | Disease | denotes | bacterial pneumonia | http://purl.obolibrary.org/obo/MONDO_0004652 |
| T292 | 278-287 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T293 | 347-356 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T294 | 357-372 | Disease | denotes | virus infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T295 | 363-372 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T296 | 421-430 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T297 | 459-478 | Disease | denotes | bacterial pneumonia | http://purl.obolibrary.org/obo/MONDO_0004652 |
| T298 | 469-478 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T299 | 589-613 | Disease | denotes | Streptococcus pneumoniae | http://purl.obolibrary.org/obo/MONDO_0005972 |
| T300 | 627-637 | Disease | denotes | influenzae | http://purl.obolibrary.org/obo/MONDO_0005812 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T305 | 90-97 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T306 | 101-102 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T307 | 221-223 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T308 | 238-240 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T309 | 357-362 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T310 | 495-503 | http://purl.obolibrary.org/obo/NCBITaxon_2 | denotes | bacteria |
| T311 | 648-649 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T50263 | 553-564 | Chemical | denotes | methicillin | http://purl.obolibrary.org/obo/CHEBI_6827 |
| T63638 | 642-647 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T407 | 0-242 | Sentence | denotes | Extrapolating data from experiences on bacterial superinfection in pneumonia due to other viruses in a retrospective case series of critically ill patients with MERS in Saudi Arabia, bacterial infection was registered in 18% of patients [48]. |
| T408 | 243-381 | Sentence | denotes | With similar prevalence, bacterial pneumonia occurred in about 20% of patients hospitalized for primary influenza virus infection [49,50]. |
| T409 | 382-487 | Sentence | denotes | In these studies, mortality related to influenza was mostly due to secondary bacterial pneumonia [49,50]. |
| T410 | 488-674 | Sentence | denotes | Common bacteria implicated were Staphylococcus aureus, including methicillin-resistant strains [51], Streptococcus pneumoniae, Haemophilus influenzae and group A streptococci [49,52,53]. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32360444-31573350-22369785 | 238-240 | 31573350 | denotes | 48 |
| 32360444-22387143-22369786 | 374-376 | 22387143 | denotes | 49 |
| 32360444-20508031-22369787 | 377-379 | 20508031 | denotes | 50 |
| 32360444-22387143-22369788 | 480-482 | 22387143 | denotes | 49 |
| 32360444-20508031-22369789 | 483-485 | 20508031 | denotes | 50 |
| 32360444-16707043-22369790 | 584-586 | 16707043 | denotes | 51 |
| 32360444-22387143-22369791 | 664-666 | 22387143 | denotes | 49 |
| 32360444-22291193-22369792 | 667-669 | 22291193 | denotes | 52 |
| 32360444-20377405-22369793 | 670-672 | 20377405 | denotes | 53 |