PMC:7189872 / 99-1303
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
8 | 592-595 | Gene | denotes | HLA | Gene:3123 |
9 | 19-29 | Species | denotes | SARS-COV-2 | Tax:2697049 |
10 | 548-558 | Species | denotes | SARS-COV-2 | Tax:2697049 |
11 | 450-453 | Gene | denotes | HLA | Gene:3123 |
12 | 39-47 | Disease | denotes | COVID-19 | MESH:C000657245 |
13 | 280-286 | Disease | denotes | deaths | MESH:D003643 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 450-453 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T2 | 462-470 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T3 | 592-595 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T4 | 910-914 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T2 | 19-23 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T3 | 39-47 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T4 | 548-552 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T2 | 6-11 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T3 | 69-70 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T4 | 130-142 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
T5 | 149-152 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T6 | 180-185 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T7 | 192-193 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T8 | 298-303 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T9 | 510-511 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T10 | 560-561 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T11 | 692-693 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | Å |
T12 | 726-727 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T13 | 804-805 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T14 | 908-914 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
T15 | 1012-1015 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T1 | 400-407 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T2 | 462-470 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T3 | 580-587 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T4 | 700-707 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T5 | 915-922 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T6 | 1036-1043 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T7 | 1086-1093 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T8 | 1146-1157 | Chemical | denotes | application | http://purl.obolibrary.org/obo/CHEBI_33232 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3 | 0-112 | Sentence | denotes | A new virus termed SARS-COV-2 (causing COVID-19 disease) can exhibit a progressive, fatal impact on individuals. |
T4 | 113-210 | Sentence | denotes | The World Health Organization (WHO) has declared the spread of the virus to be a global pandemic. |
T5 | 211-304 | Sentence | denotes | Currently, there are over 1 million cases and over 100,000 confirmed deaths due to the virus. |
T6 | 305-372 | Sentence | denotes | Hence, prophylactic and therapeutic strategies are promptly needed. |
T7 | 373-471 | Sentence | denotes | In this study we report an epitope, ITLCFTLKR, which is biochemically fit to HLA allelic proteins. |
T8 | 472-559 | Sentence | denotes | We propose that this could be used as a potential vaccine candidate against SARS-COV-2. |
T9 | 560-694 | Sentence | denotes | A selected putative epitope and HLA-allelic complexes show not only better binding scores, but also RMSD values in the range of 0–1 Å. |
T10 | 695-792 | Sentence | denotes | This epitope was found to have a 99.8% structural favorability as per Ramachandran-plot analysis. |
T11 | 793-932 | Sentence | denotes | Similarly, a suitable range of IC50 values and population coverage was obtained to represent greater validation of T-cell epitope analysis. |
T12 | 933-1061 | Sentence | denotes | Stability analysis using MDWeb and half-life analysis using the ProtParam tool has confirmed that this epitope is well-selected. |
T13 | 1062-1204 | Sentence | denotes | This new methodology of epitope-based vaccine prediction is fundamental and fast in application, ad can be economically beneficial and viable. |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3 | 6-11 | NCBITaxon:10239 | denotes | virus |
T4 | 19-29 | SP_7 | denotes | SARS-COV-2 |
T5 | 39-47 | SP_7 | denotes | COVID-19 |
T6 | 100-111 | NCBITaxon:1 | denotes | individuals |
T7 | 180-185 | NCBITaxon:10239 | denotes | virus |
T8 | 280-286 | GO:0016265 | denotes | deaths |
T9 | 298-303 | NCBITaxon:10239 | denotes | virus |
T10 | 400-407 | BV_9 | denotes | epitope |
T11 | 454-461 | SO:0001023 | denotes | allelic |
T12 | 548-558 | SP_7 | denotes | SARS-COV-2 |
T13 | 580-587 | BV_9 | denotes | epitope |
T14 | 596-603 | SO:0001023 | denotes | allelic |
T15 | 604-613 | GO:0032991 | denotes | complexes |
T16 | 700-707 | BV_9 | denotes | epitope |
T17 | 908-914 | CL:0000084 | denotes | T-cell |
T18 | 915-922 | BV_9 | denotes | epitope |
T19 | 1036-1043 | BV_9 | denotes | epitope |
T20 | 1086-1093 | BV_9 | denotes | epitope |
T89716 | 6-11 | NCBITaxon:10239 | denotes | virus |
T3545 | 19-29 | SP_7 | denotes | SARS-COV-2 |
T37403 | 39-47 | SP_7 | denotes | COVID-19 |
T40432 | 100-111 | NCBITaxon:1 | denotes | individuals |
T76467 | 180-185 | NCBITaxon:10239 | denotes | virus |
T53137 | 280-286 | GO:0016265 | denotes | deaths |
T12429 | 298-303 | NCBITaxon:10239 | denotes | virus |
T47961 | 400-407 | BV_9 | denotes | epitope |
T58292 | 454-461 | SO:0001023 | denotes | allelic |
T29003 | 548-558 | SP_7 | denotes | SARS-COV-2 |
T17586 | 580-587 | BV_9 | denotes | epitope |
T70831 | 596-603 | SO:0001023 | denotes | allelic |
T51661 | 604-613 | GO:0032991 | denotes | complexes |
T33806 | 700-707 | BV_9 | denotes | epitope |
T18714 | 908-914 | CL:0000084 | denotes | T-cell |
T45861 | 915-922 | BV_9 | denotes | epitope |
T12543 | 1036-1043 | BV_9 | denotes | epitope |
T27466 | 1086-1093 | BV_9 | denotes | epitope |