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PMC:7189872 / 99-1303 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
8 592-595 Gene denotes HLA Gene:3123
9 19-29 Species denotes SARS-COV-2 Tax:2697049
10 548-558 Species denotes SARS-COV-2 Tax:2697049
11 450-453 Gene denotes HLA Gene:3123
12 39-47 Disease denotes COVID-19 MESH:C000657245
13 280-286 Disease denotes deaths MESH:D003643

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 450-453 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T2 462-470 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T3 592-595 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T4 910-914 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 19-23 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T3 39-47 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 548-552 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 6-11 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 69-70 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 130-142 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T5 149-152 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 180-185 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 192-193 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 298-303 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 510-511 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 560-561 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T11 692-693 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T12 726-727 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 804-805 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 908-914 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T15 1012-1015 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 400-407 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T2 462-470 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T3 580-587 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T4 700-707 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T5 915-922 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T6 1036-1043 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T7 1086-1093 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T8 1146-1157 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-112 Sentence denotes A new virus termed SARS-COV-2 (causing COVID-19 disease) can exhibit a progressive, fatal impact on individuals.
T4 113-210 Sentence denotes The World Health Organization (WHO) has declared the spread of the virus to be a global pandemic.
T5 211-304 Sentence denotes Currently, there are over 1 million cases and over 100,000 confirmed deaths due to the virus.
T6 305-372 Sentence denotes Hence, prophylactic and therapeutic strategies are promptly needed.
T7 373-471 Sentence denotes In this study we report an epitope, ITLCFTLKR, which is biochemically fit to HLA allelic proteins.
T8 472-559 Sentence denotes We propose that this could be used as a potential vaccine candidate against SARS-COV-2.
T9 560-694 Sentence denotes A selected putative epitope and HLA-allelic complexes show not only better binding scores, but also RMSD values in the range of 0–1 Å.
T10 695-792 Sentence denotes This epitope was found to have a 99.8% structural favorability as per Ramachandran-plot analysis.
T11 793-932 Sentence denotes Similarly, a suitable range of IC50 values and population coverage was obtained to represent greater validation of T-cell epitope analysis.
T12 933-1061 Sentence denotes Stability analysis using MDWeb and half-life analysis using the ProtParam tool has confirmed that this epitope is well-selected.
T13 1062-1204 Sentence denotes This new methodology of epitope-based vaccine prediction is fundamental and fast in application, ad can be economically beneficial and viable.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T3 6-11 NCBITaxon:10239 denotes virus
T4 19-29 SP_7 denotes SARS-COV-2
T5 39-47 SP_7 denotes COVID-19
T6 100-111 NCBITaxon:1 denotes individuals
T7 180-185 NCBITaxon:10239 denotes virus
T8 280-286 GO:0016265 denotes deaths
T9 298-303 NCBITaxon:10239 denotes virus
T10 400-407 BV_9 denotes epitope
T11 454-461 SO:0001023 denotes allelic
T12 548-558 SP_7 denotes SARS-COV-2
T13 580-587 BV_9 denotes epitope
T14 596-603 SO:0001023 denotes allelic
T15 604-613 GO:0032991 denotes complexes
T16 700-707 BV_9 denotes epitope
T17 908-914 CL:0000084 denotes T-cell
T18 915-922 BV_9 denotes epitope
T19 1036-1043 BV_9 denotes epitope
T20 1086-1093 BV_9 denotes epitope
T89716 6-11 NCBITaxon:10239 denotes virus
T3545 19-29 SP_7 denotes SARS-COV-2
T37403 39-47 SP_7 denotes COVID-19
T40432 100-111 NCBITaxon:1 denotes individuals
T76467 180-185 NCBITaxon:10239 denotes virus
T53137 280-286 GO:0016265 denotes deaths
T12429 298-303 NCBITaxon:10239 denotes virus
T47961 400-407 BV_9 denotes epitope
T58292 454-461 SO:0001023 denotes allelic
T29003 548-558 SP_7 denotes SARS-COV-2
T17586 580-587 BV_9 denotes epitope
T70831 596-603 SO:0001023 denotes allelic
T51661 604-613 GO:0032991 denotes complexes
T33806 700-707 BV_9 denotes epitope
T18714 908-914 CL:0000084 denotes T-cell
T45861 915-922 BV_9 denotes epitope
T12543 1036-1043 BV_9 denotes epitope
T27466 1086-1093 BV_9 denotes epitope