PMC:7189872 / 8611-9480
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 135 | 5-13 | Disease | denotes | Toxicity | MESH:D064420 |
| 137 | 125-133 | Disease | denotes | toxicity | MESH:D064420 |
| 140 | 689-692 | Gene | denotes | HLA | Gene:3123 |
| 141 | 482-485 | Gene | denotes | MHC | Gene:3107 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T67 | 471-474 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T68 | 482-485 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T69 | 689-692 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T70 | 704-707 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T71 | 715-718 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T22 | 376-379 | Disease | denotes | IED | http://purl.obolibrary.org/obo/MONDO_0013184 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T65 | 475-477 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T66 | 708-710 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T68 | 0-66 | Sentence | denotes | 2.6 Toxicity, Ramachandran-plot, and population coverage analysis |
| T69 | 67-346 | Sentence | denotes | The ToxinPred server [16] is utilized for determining the toxicity scoring of Epitopes for selecting non-toxic ones; also, the Ramachandran plot analysis was deployed by using the MolProbity 4.2 server [6] to analyze the quantitative presence of residues in the favorable region. |
| T70 | 347-577 | Sentence | denotes | The Immune Epitope Database (IED) resource web-server of population coverage was used to predict population coverage of the MHC II and MHC I alleles that interact with screened out epitopes based on their restriction database [5]. |
| T71 | 578-726 | Sentence | denotes | The MHCPred web-server was effectively used in quantitative prediction of sorted out epitopes interacting with HLA alleles of MHC II and MHC I [15]. |
| T72 | 727-869 | Sentence | denotes | Thereafter the ProtParam tool [42] of the ExPASy server was used to screen final stable epitopes based on the instability index and half-life. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T160 | 145-153 | BV_9 | denotes | Epitopes |
| T161 | 358-365 | BV_9 | denotes | Epitope |
| T162 | 471-477 | GO:0042613 | denotes | MHC II |
| T163 | 482-487 | GO:0042613 | denotes | MHC I |
| T164 | 488-495 | SO:0001023 | denotes | alleles |
| T165 | 528-536 | BV_9 | denotes | epitopes |
| T166 | 663-671 | BV_9 | denotes | epitopes |
| T167 | 693-700 | SO:0001023 | denotes | alleles |
| T168 | 704-710 | GO:0042613 | denotes | MHC II |
| T169 | 715-720 | GO:0042613 | denotes | MHC I |
| T170 | 815-823 | BV_9 | denotes | epitopes |
| T67892 | 145-153 | BV_9 | denotes | Epitopes |
| T70441 | 358-365 | BV_9 | denotes | Epitope |
| T62519 | 471-477 | GO:0042613 | denotes | MHC II |
| T2795 | 482-487 | GO:0042613 | denotes | MHC I |
| T57459 | 488-495 | SO:0001023 | denotes | alleles |
| T34218 | 528-536 | BV_9 | denotes | epitopes |
| T1145 | 663-671 | BV_9 | denotes | epitopes |
| T75781 | 693-700 | SO:0001023 | denotes | alleles |
| T73958 | 704-710 | GO:0042613 | denotes | MHC II |
| T68972 | 715-720 | GO:0042613 | denotes | MHC I |
| T71312 | 815-823 | BV_9 | denotes | epitopes |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32352026-20057044-47638074 | 270-271 | 20057044 | denotes | 6 |
| 32352026-12824380-47638075 | 722-724 | 12824380 | denotes | 15 |
| T64571 | 270-271 | 20057044 | denotes | 6 |
| T95730 | 722-724 | 12824380 | denotes | 15 |