PMC:7189872 / 7512-7772
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7189872","sourcedb":"PMC","sourceid":"7189872","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7189872","text":"2.3 Structural prediction: Putative epitopes and MHC HLA alleles\nThe epitopes 3D structural findings were conducted by using the PEP-FOLD-3.5 server [25,33,34] and MHC HLA Allelic peptides tertiary or 3D structure were obtained from the RCSB-PDB database [4].","divisions":[{"label":"label","span":{"begin":0,"end":3}},{"label":"title","span":{"begin":5,"end":65}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"116","span":{"begin":50,"end":53},"obj":"Gene"},{"id":"117","span":{"begin":54,"end":57},"obj":"Gene"},{"id":"121","span":{"begin":130,"end":133},"obj":"Gene"},{"id":"122","span":{"begin":165,"end":168},"obj":"Gene"},{"id":"123","span":{"begin":169,"end":172},"obj":"Gene"}],"attributes":[{"id":"A116","pred":"tao:has_database_id","subj":"116","obj":"Gene:3107"},{"id":"A117","pred":"tao:has_database_id","subj":"117","obj":"Gene:3123"},{"id":"A121","pred":"tao:has_database_id","subj":"121","obj":"Gene:5047"},{"id":"A122","pred":"tao:has_database_id","subj":"122","obj":"Gene:3107"},{"id":"A123","pred":"tao:has_database_id","subj":"123","obj":"Gene:3123"},{"subj":"116","pred":"source","obj":"LitCovid-PubTator"},{"subj":"117","pred":"source","obj":"LitCovid-PubTator"},{"subj":"121","pred":"source","obj":"LitCovid-PubTator"},{"subj":"122","pred":"source","obj":"LitCovid-PubTator"},{"subj":"123","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T60","span":{"begin":50,"end":53},"obj":"Body_part"},{"id":"T61","span":{"begin":54,"end":57},"obj":"Body_part"},{"id":"T62","span":{"begin":165,"end":168},"obj":"Body_part"},{"id":"T63","span":{"begin":169,"end":172},"obj":"Body_part"}],"attributes":[{"id":"A60","pred":"fma_id","subj":"T60","obj":"http://purl.org/sig/ont/fma/fma84079"},{"id":"A61","pred":"fma_id","subj":"T61","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A62","pred":"fma_id","subj":"T62","obj":"http://purl.org/sig/ont/fma/fma84079"},{"id":"A63","pred":"fma_id","subj":"T63","obj":"http://purl.org/sig/ont/fma/fma84795"},{"subj":"T60","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T61","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T62","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T63","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T66","span":{"begin":181,"end":189},"obj":"http://purl.obolibrary.org/obo/PR_000018263"}],"attributes":[{"subj":"T66","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T52","span":{"begin":130,"end":133},"obj":"Chemical"},{"id":"T54","span":{"begin":181,"end":189},"obj":"Chemical"}],"attributes":[{"id":"A52","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_18021"},{"id":"A53","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_44897"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"subj":"T52","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T59","span":{"begin":0,"end":27},"obj":"Sentence"},{"id":"T60","span":{"begin":28,"end":65},"obj":"Sentence"},{"id":"T61","span":{"begin":66,"end":260},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T59","pred":"source","obj":"LitCovid-sentences"},{"subj":"T60","pred":"source","obj":"LitCovid-sentences"},{"subj":"T61","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T147","span":{"begin":37,"end":45},"obj":"BV_9"},{"id":"T148","span":{"begin":50,"end":53},"obj":"GO:0042611"},{"id":"T149","span":{"begin":58,"end":65},"obj":"SO:0001023"},{"id":"T150","span":{"begin":70,"end":78},"obj":"BV_9"},{"id":"T151","span":{"begin":165,"end":168},"obj":"GO:0042611"},{"id":"T152","span":{"begin":173,"end":180},"obj":"SO:0001023"},{"id":"T86453","span":{"begin":37,"end":45},"obj":"BV_9"},{"id":"T60418","span":{"begin":50,"end":53},"obj":"GO:0042611"},{"id":"T64831","span":{"begin":58,"end":65},"obj":"SO:0001023"},{"id":"T92728","span":{"begin":70,"end":78},"obj":"BV_9"},{"id":"T43102","span":{"begin":165,"end":168},"obj":"GO:0042611"},{"id":"T89902","span":{"begin":173,"end":180},"obj":"SO:0001023"}],"attributes":[{"subj":"T147","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T148","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T149","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T150","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T151","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T152","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T86453","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T60418","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T64831","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T92728","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T43102","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T89902","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"2_test","denotations":[{"id":"32352026-22581768-47638070","span":{"begin":157,"end":159},"obj":"22581768"},{"id":"32352026-10592235-47638071","span":{"begin":257,"end":258},"obj":"10592235"},{"id":"T22954","span":{"begin":157,"end":159},"obj":"22581768"},{"id":"T73323","span":{"begin":257,"end":258},"obj":"10592235"}],"attributes":[{"subj":"32352026-22581768-47638070","pred":"source","obj":"2_test"},{"subj":"32352026-10592235-47638071","pred":"source","obj":"2_test"},{"subj":"T22954","pred":"source","obj":"2_test"},{"subj":"T73323","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93b5ec","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#cfec93"},{"id":"LitCovid-PD-CLO","color":"#ec93e9"},{"id":"LitCovid-PD-CHEBI","color":"#93ecd5"},{"id":"LitCovid-sentences","color":"#ecbb93"},{"id":"LitCovid-PMC-OGER-BB","color":"#a193ec"},{"id":"2_test","color":"#9fec93"}]}]}}