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PMC:7189872 / 1305-24668 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
15 3593-3601 Species denotes SARS-CoV Tax:694009
45 2721-2726 Gene denotes ORF3a Gene:43740569
46 2736-2741 Gene denotes ORF7a Gene:43740573
47 3234-3238 Gene denotes nsp1 Gene:10045
48 1926-1929 Gene denotes HLA Gene:3123
49 587-598 Species denotes coronavirus Tax:11118
50 606-617 Species denotes coronavirus Tax:11118
51 701-714 Species denotes Coronaviridae Tax:11118
52 814-822 Species denotes Mammalia Tax:9606
53 844-850 Species denotes humans Tax:9606
54 857-902 Species denotes Severe acute respiratory syndrome coronavirus Tax:694009
55 904-912 Species denotes SARS-CoV Tax:694009
56 962-973 Species denotes coronavirus Tax:11118
57 975-983 Species denotes MERS-CoV Tax:1335626
58 1007-1022 Species denotes β-coronaviruses Tax:694002
59 1061-1071 Species denotes SARS-COV-2 Tax:2697049
60 1302-1312 Species denotes SARS-COV-2 Tax:2697049
61 1435-1441 Species denotes humans Tax:9606
62 1520-1530 Species denotes SARS-COV-2 Tax:2697049
63 1847-1857 Species denotes SARS-COV-2 Tax:2697049
64 2373-2378 Species denotes human Tax:9606
65 2650-2659 Species denotes SARS-COV2 Tax:2697049
66 2942-2950 Species denotes SARS-CoV Tax:694009
67 1901-1904 Gene denotes MHC Gene:3107
68 32-40 Disease denotes COVID-19 MESH:C000657245
69 254-262 Disease denotes COVID-19 MESH:C000657245
70 380-386 Disease denotes deaths MESH:D003643
71 505-511 Disease denotes deaths MESH:D003643
72 2050-2058 Disease denotes Toxicity MESH:D064420
73 3091-3095 Disease denotes ORFs MESH:D004474
81 3669-3675 Gene denotes ORF-3a Gene:43740569
82 4331-4334 Gene denotes CD4 Gene:920
83 4340-4343 Gene denotes CD8 Gene:925
84 4492-4497 Gene denotes SPIKE Gene:43740568
85 4549-4560 Gene denotes MHC I and 3
86 3680-3686 Gene denotes ORF-7a Gene:43740573
87 3699-3709 Species denotes SARS-COV-2 Tax:2697049
91 5508-5513 Gene denotes ORF3a Gene:43740569
92 5352-5356 Gene denotes Bank Gene:55024
93 5608-5613 Gene denotes ORF7a Gene:43740573
95 5308-5318 Species denotes SARS COV-2 Tax:2697049
100 5082-5098 Gene denotes envelope protein Gene:64006
101 5100-5105 Gene denotes ORF3a Gene:43740569
102 5144-5149 Gene denotes ORF7a Gene:43740573
103 4928-4938 Species denotes SARS-COV-2 Tax:2697049
106 5727-5730 Gene denotes MHC Gene:3107
107 5731-5734 Gene denotes HLA Gene:3123
111 5933-5945 Gene denotes MHC Class II
112 5952-5955 Gene denotes HLA Gene:3123
113 6133-6140 Chemical denotes VaxiJen
116 6257-6260 Gene denotes MHC Gene:3107
117 6261-6264 Gene denotes HLA Gene:3123
121 6337-6340 Gene denotes PEP Gene:5047
122 6372-6375 Gene denotes MHC Gene:3107
123 6376-6379 Gene denotes HLA Gene:3123
126 6527-6530 Gene denotes HLA Gene:3123
127 6646-6649 Gene denotes ACE Gene:1636
131 7021-7028 Species denotes C-alpha Tax:342041
132 7155-7161 Chemical denotes carbon MESH:D002244
133 6984-7001 Disease denotes Coarse grained MD MESH:D009436
135 7311-7319 Disease denotes Toxicity MESH:D064420
137 7431-7439 Disease denotes toxicity MESH:D064420
140 7995-7998 Gene denotes HLA Gene:3123
141 7788-7791 Gene denotes MHC Gene:3107
149 9405-9410 Gene denotes HLA-A Gene:3105
150 9467-9472 Gene denotes HLA-A Gene:3105
151 9572-9577 Gene denotes HLA-A Gene:3105
152 9519-9524 Gene denotes HLA-A Gene:3105
153 9304-9309 Gene denotes HLA-A Gene:3105
154 9255-9260 Gene denotes HLA-A Gene:3105
155 9165-9168 Gene denotes MHC Gene:3107
157 9116-9119 Gene denotes HLA Gene:3123
162 10081-10089 Gene denotes HLA-DRB1 Gene:3123
163 10148-10156 Gene denotes HLA-DRB1 Gene:3123
164 10204-10212 Gene denotes HLA-DRB1 Gene:3123
165 9913-9916 Gene denotes MHC Gene:3107
167 9864-9867 Gene denotes HLA Gene:3123
170 10421-10424 Gene denotes HLA Gene:3123
171 10396-10399 Gene denotes MHC Gene:3107
176 8881-8884 Gene denotes HLA Gene:3123
177 8597-8600 Gene denotes HLA Gene:3123
178 8514-8517 Gene denotes HLA Gene:3123
179 8856-8859 Gene denotes MHC Gene:3107
182 10505-10508 Gene denotes MHC Gene:3107
183 10509-10512 Gene denotes HLA Gene:3123
191 10908-10913 Gene denotes HLA-A Gene:3105
192 10978-10983 Gene denotes HLA-A Gene:3105
193 11048-11056 Gene denotes HLA-DRB1 Gene:3123
194 11086-11094 Gene denotes HLA-DRB1 Gene:3123
195 11124-11132 Gene denotes HLA-DRB1 Gene:3123
196 11013-11018 Gene denotes HLA-A Gene:3105
197 10943-10948 Gene denotes HLA-A Gene:3105
200 10774-10777 Gene denotes MHC Gene:3107
201 10778-10781 Gene denotes HLA Gene:3123
204 10596-10599 Gene denotes HLA Gene:3123
205 10567-10570 Gene denotes PEP Gene:5047
214 11959-11962 Gene denotes ACE Gene:1636
215 11983-11988 Gene denotes HLA-A Gene:3105
216 12032-12037 Gene denotes HLA-A Gene:3105
217 12081-12086 Gene denotes HLA-A Gene:3105
218 12129-12134 Gene denotes HLA-A Gene:3105
219 12178-12183 Gene denotes HLA-A Gene:3105
220 12227-12232 Gene denotes HLA-A Gene:3105
221 11906-11909 Gene denotes HLA Gene:3123
223 11799-11802 Gene denotes Ace Gene:1636
242 11380-11383 Gene denotes ACE Gene:1636
243 11442-11448 Gene denotes ORF-7A Gene:43740573
244 11494-11499 Gene denotes HLA-A Gene:3105
245 11507-11512 Gene denotes HLA-A Gene:3105
246 11563-11569 Gene denotes ORF-3a Gene:43740569
247 11660-11666 Gene denotes ORF-7a Gene:43740573
248 11713-11721 Gene denotes HLA-DRB1 Gene:3123
249 11729-11737 Gene denotes HLA-DRB1 Gene:3123
250 11606-11611 Gene denotes HLA-A Gene:3105
251 11700-11703 Gene denotes HLA Gene:3123
252 11594-11597 Gene denotes HLA Gene:3123
253 11481-11484 Gene denotes HLA Gene:3123
254 11335-11338 Gene denotes HLA Gene:3123
255 11752-11755 Gene denotes MHC Gene:3107
256 11622-11625 Gene denotes MHC Gene:3107
257 11523-11526 Gene denotes MHC Gene:3107
258 11259-11262 Gene denotes MHC Gene:3107
259 11271-11274 Gene denotes HLA Gene:3123
267 12931-12936 Gene denotes HLA-A Gene:3105
268 12947-12952 Gene denotes MHC I
269 12953-12956 Gene denotes HLA Gene:3123
270 12971-12980 Chemical denotes Threonine MESH:D013912
271 13047-13055 Chemical denotes hydrogen MESH:D006859
272 13153-13166 Chemical denotes Glutamic acid MESH:D018698
273 13171-13177 Chemical denotes lysine MESH:D008239
280 13363-13368 Gene denotes HLA-A Gene:3105
281 13379-13384 Gene denotes MHC I
282 13385-13388 Gene denotes HLA Gene:3123
283 13403-13412 Chemical denotes Threonine MESH:D013912
284 13449-13457 Chemical denotes cysteine MESH:D003545
285 13512-13520 Chemical denotes hydrogen MESH:D006859
293 13729-13737 Gene denotes HLA-DRB1 Gene:3123
294 13754-13757 Gene denotes HLA Gene:3123
295 13772-13780 Chemical denotes Tyrosine MESH:D014443
296 13789-13798 Chemical denotes Glutamine MESH:D005973
297 13819-13825 Chemical denotes Serine MESH:D012694
298 13875-13883 Chemical denotes hydrogen MESH:D006859
299 13971-13982 Chemical denotes 7tharginine
301 14151-14154 Gene denotes HLA Gene:3123
306 12539-12542 Gene denotes HLA Gene:3123
307 12520-12523 Gene denotes MHC Gene:3107
308 12847-12850 Gene denotes HLA Gene:3123
309 12555-12563 Chemical denotes hydrogen MESH:D006859
314 15157-15165 Gene denotes HLA-DRB1 Gene:3123
315 15319-15327 Gene denotes HLA-DRB1 Gene:3123
316 14934-14939 Gene denotes HLA-A Gene:3105
317 15101-15106 Gene denotes HLA-A Gene:3105
321 14633-14638 Gene denotes HLA-A Gene:3105
322 14722-14730 Gene denotes HLA-DRB1 Gene:3123
323 14324-14327 Gene denotes HLA Gene:3123
325 15356-15364 Disease denotes Toxicity MESH:D064420
327 15654-15694 Disease denotes Hydrophilicity Molecular weight Toxicity MESH:C537060
334 16811-16816 Gene denotes HLA-A Gene:3105
335 16929-16937 Gene denotes HLA-DRB1 Gene:3123
336 16971-16979 Gene denotes HLA-DRB1 Gene:3123
337 16889-16894 Gene denotes HLA-A Gene:3105
338 16850-16855 Gene denotes HLA-A Gene:3105
339 16697-16700 Gene denotes HLA Gene:3123
341 16651-16654 Gene denotes HLA Gene:3123
344 16463-16466 Gene denotes MHC Gene:3107
345 16453-16456 Gene denotes MHC Gene:3107
347 17974-17983 Species denotes Mammalian Tax:9606
350 17819-17828 Species denotes mammalian Tax:9606
351 17699-17713 Disease denotes hydropathicity
364 18953-18957 Gene denotes ViPR Gene:7433
365 19656-19661 Gene denotes MHC I
366 18167-18177 Species denotes SARS-COV-2 Tax:2697049
367 18330-18338 Species denotes SARS-COV Tax:694009
368 18657-18665 Species denotes MERS-COV Tax:1335626
369 18871-18876 Species denotes COV-2 Tax:2697049
370 19096-19106 Species denotes SARS-COV-2 Tax:2697049
371 19228-19238 Species denotes SARS-COV-2 Tax:2697049
372 19401-19411 Species denotes SARS-COV-2 Tax:2697049
373 19592-19602 Species denotes SARS-COV-2 Tax:2697049
374 19692-19695 Gene denotes HLA Gene:3123
375 18605-18613 Disease denotes toxicity MESH:D064420
399 19745-19750 Gene denotes HLA-B Gene:3106
400 19853-19858 Gene denotes HLA-A Gene:3105
401 19866-19871 Gene denotes HLA-A Gene:3105
402 19879-19887 Gene denotes HLA-DRB1 Gene:3123
403 19898-19906 Gene denotes HLA-DRB1 Gene:3123
404 19914-19917 Gene denotes CD4 Gene:920
405 19923-19926 Gene denotes CD8 Gene:925
406 20133-20138 Gene denotes IFN-γ Gene:3458
407 20620-20625 Gene denotes Spike Gene:43740568
408 20684-20687 Gene denotes ACE Gene:1636
409 20689-20718 Gene denotes Angiotensin Converting Enzyme Gene:1636
410 20919-20922 Gene denotes MHC Gene:3107
411 19733-19738 Gene denotes HLA-B Gene:3106
412 19724-19732 Species denotes SARS-CoV Tax:694009
413 20042-20050 Species denotes SARS-CoV Tax:694009
414 20637-20647 Species denotes SARS-COV-2 Tax:2697049
415 20734-20739 Species denotes Human Tax:9606
416 20991-21001 Species denotes SARS-COV-2 Tax:2697049
417 21351-21360 Species denotes mammalian Tax:9606
418 19819-19822 Gene denotes MHC Gene:3107
419 19757-19760 Gene denotes HLA Gene:3123
420 20600-20607 Chemical denotes CR-3022
421 21232-21246 Disease denotes hydropathicity
432 22050-22056 Gene denotes ORF-3a Gene:43740569
433 21814-21819 Gene denotes spike Gene:43740568
434 22061-22067 Gene denotes ORF-7a Gene:43740573
435 21867-21875 Species denotes SARS-COV Tax:694009
436 21916-21926 Species denotes SARS-COV-2 Tax:2697049
437 22080-22090 Species denotes SARS-COV-2 Tax:2697049
438 22452-22462 Species denotes SARS-COV-2 Tax:2697049
439 21446-21449 Gene denotes HLA Gene:3123
440 21750-21758 Disease denotes COVID-19 MESH:C000657245
441 22291-22294 Disease denotes HMM
446 22812-22815 Gene denotes MHC Gene:3107
447 22816-22819 Gene denotes HLA Gene:3123
448 22724-22734 Species denotes SARS-COV-2 Tax:2697049
449 22971-22981 Species denotes SARS-COV-2 Tax:2697049
451 23229-23234 Species denotes human Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 624-627 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 1742-1746 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T7 1794-1801 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T8 1901-1904 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T9 1926-1929 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T10 2304-2308 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T11 2756-2766 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T12 2774-2795 Body_part denotes transmembrane protein http://purl.org/sig/ont/fma/fma67858
T13 2913-2927 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871
T14 2986-2989 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 3003-3009 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T16 3038-3044 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T17 3112-3120 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T18 3224-3232 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T19 3259-3262 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T20 3290-3298 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T21 3388-3396 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T22 3551-3557 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T23 3581-3589 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T24 3653-3661 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T25 3738-3742 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T26 3821-3829 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T27 3902-3910 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T28 4015-4019 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T29 4141-4145 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T30 4175-4179 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T31 4212-4220 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T32 4255-4259 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 4347-4352 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 4478-4485 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T35 4498-4505 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 4549-4552 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T37 4565-4568 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T38 4604-4612 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T39 4803-4810 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T40 4853-4860 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 5064-5072 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T42 5091-5098 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T43 5106-5113 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T44 5150-5157 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T45 5172-5184 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T46 5286-5294 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T47 5339-5346 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T48 5347-5351 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T49 5371-5378 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T50 5471-5478 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T51 5514-5521 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T52 5614-5621 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T53 5660-5672 Body_part denotes Glycoprotein http://purl.org/sig/ont/fma/fma62925
T54 5699-5703 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T55 5727-5730 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T56 5731-5734 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T57 5933-5936 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T58 5952-5955 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T59 6031-6046 Body_part denotes neural networks http://purl.org/sig/ont/fma/fma74616
T60 6257-6260 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T61 6261-6264 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T62 6372-6375 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T63 6376-6379 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T64 6527-6530 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T65 6876-6887 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T66 7122-7124 Body_part denotes Ǻ2 http://purl.org/sig/ont/fma/fma66595
T67 7777-7780 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T68 7788-7791 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T69 7995-7998 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T70 8010-8013 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T71 8021-8024 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T72 8196-8200 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T73 8254-8262 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T74 8514-8517 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T75 8564-8567 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T76 8576-8579 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T77 8584-8587 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T78 8597-8600 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T79 8856-8859 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T80 8881-8884 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T81 8964-8967 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T82 9116-9119 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T83 9165-9168 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T84 9255-9258 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T85 9304-9307 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T86 9405-9408 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T87 9467-9470 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T88 9519-9522 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T89 9572-9575 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T90 9703-9706 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T91 9864-9867 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T92 9913-9916 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T93 10081-10084 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T94 10148-10151 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T95 10204-10207 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T96 10396-10399 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T97 10421-10424 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T98 10505-10508 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T99 10509-10512 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T100 10596-10599 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T101 10774-10777 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T102 10778-10781 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T103 10908-10911 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T104 10943-10946 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T105 10978-10981 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T106 11013-11016 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T107 11048-11051 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T108 11086-11089 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T109 11124-11127 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T110 11259-11262 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T111 11271-11274 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T112 11322-11325 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T113 11335-11338 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T114 11449-11456 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T115 11481-11484 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T116 11494-11497 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T117 11507-11510 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T118 11523-11526 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T119 11570-11577 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T120 11594-11597 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T121 11606-11609 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T122 11622-11625 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T123 11667-11674 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T124 11700-11703 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T125 11713-11716 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T126 11729-11732 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T127 11752-11755 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T128 11906-11909 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T129 11983-11986 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T130 12032-12035 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T131 12081-12084 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T132 12129-12132 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T133 12178-12181 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T134 12227-12230 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T135 12490-12494 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T136 12520-12523 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T137 12539-12542 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T138 12847-12850 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T139 12931-12934 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T140 12947-12950 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T141 12953-12956 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T142 12971-12980 Body_part denotes Threonine http://purl.org/sig/ont/fma/fma82765
T143 13153-13166 Body_part denotes Glutamic acid http://purl.org/sig/ont/fma/fma82762
T144 13171-13177 Body_part denotes lysine http://purl.org/sig/ont/fma/fma82758
T145 13242-13253 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T146 13363-13366 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T147 13379-13382 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T148 13385-13388 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T149 13403-13412 Body_part denotes Threonine http://purl.org/sig/ont/fma/fma82765
T150 13449-13457 Body_part denotes cysteine http://purl.org/sig/ont/fma/fma82751
T151 13608-13619 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T152 13729-13732 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T153 13754-13757 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T154 13772-13780 Body_part denotes Tyrosine http://purl.org/sig/ont/fma/fma82768
T155 13789-13798 Body_part denotes Glutamine http://purl.org/sig/ont/fma/fma82752
T156 13819-13825 Body_part denotes Serine http://purl.org/sig/ont/fma/fma82764
T157 14039-14050 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T158 14151-14154 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T159 14257-14267 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T160 14324-14327 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T161 14503-14507 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T162 14633-14636 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T163 14722-14725 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T164 14799-14806 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T165 14934-14937 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T166 14964-14974 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T167 15059-15069 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T168 15101-15104 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T169 15157-15160 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T170 15182-15192 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T171 15277-15287 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T172 15319-15322 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T173 15501-15505 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T174 16115-16119 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T175 16453-16456 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T176 16463-16466 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T177 16651-16654 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T178 16697-16700 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T179 16709-16719 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T180 16811-16814 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T181 16850-16853 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T182 16889-16892 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T183 16929-16932 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T184 16971-16974 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T185 17829-17842 Body_part denotes reticulocytes http://purl.org/sig/ont/fma/fma66785
T186 17984-17997 Body_part denotes reticulocytes http://purl.org/sig/ont/fma/fma66785
T187 18184-18192 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T188 18705-18709 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T189 18894-18901 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T190 19084-19092 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T191 19267-19271 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T192 19471-19483 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T193 19578-19586 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T194 19630-19634 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T195 19656-19659 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T196 19673-19676 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T197 19692-19695 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T198 19733-19736 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T199 19745-19748 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T200 19757-19760 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T201 19819-19822 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T202 19853-19856 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T203 19866-19869 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T204 19879-19882 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T205 19898-19901 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T206 19937-19942 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T207 20081-20085 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T208 20626-20633 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T209 20752-20762 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T210 20878-20882 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T211 20919-20922 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T212 21361-21374 Body_part denotes reticulocytes http://purl.org/sig/ont/fma/fma66785
T213 21446-21449 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T214 21820-21827 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T215 21846-21853 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T216 21927-21935 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T217 22034-22042 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T218 22119-22123 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T219 22183-22191 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T220 22812-22815 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T221 22816-22819 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 20752-20762 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 32-40 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 254-262 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 857-890 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T8 904-912 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 941-961 Disease denotes respiratory disorder http://purl.obolibrary.org/obo/MONDO_0005087
T10 1061-1065 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 1302-1306 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 1520-1524 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 1847-1851 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 2650-2654 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 2942-2950 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 3593-3601 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 3699-3703 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 4928-4932 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 5308-5312 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 5799-5802 Disease denotes PAN http://purl.obolibrary.org/obo/MONDO_0014306|http://purl.obolibrary.org/obo/MONDO_0019170
T22 7682-7685 Disease denotes IED http://purl.obolibrary.org/obo/MONDO_0013184
T23 8358-8361 Disease denotes PAN http://purl.obolibrary.org/obo/MONDO_0014306|http://purl.obolibrary.org/obo/MONDO_0019170
T25 18167-18171 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 18330-18334 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 19096-19100 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 19228-19232 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 19401-19405 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T30 19592-19596 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 19724-19732 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 20042-20050 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 20101-20104 Disease denotes DTH http://purl.obolibrary.org/obo/MONDO_0002459
T34 20637-20641 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T35 20991-20995 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 21750-21758 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 21867-21871 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 21916-21920 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 22080-22084 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 22452-22456 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 22724-22728 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 22971-22975 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T16 95-98 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 111-112 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 182-194 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T19 398-401 http://purl.obolibrary.org/obo/CLO_0054057 denotes 181
T20 633-638 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 782-789 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes Primate
T22 814-822 http://purl.obolibrary.org/obo/NCBITaxon_40674 denotes Mammalia
T23 844-850 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T24 1090-1093 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 1313-1318 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 1435-1441 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T27 1459-1462 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 1565-1570 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T29 1740-1746 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T30 2217-2218 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 2302-2308 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T32 2334-2335 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 2373-2378 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T34 2480-2481 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 2609-2616 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T36 2685-2690 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T37 2750-2751 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 2828-2829 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 2990-2995 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T40 3001-3002 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 3558-3570 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T42 3736-3742 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T43 3883-3885 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T44 4013-4019 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T45 4139-4145 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T46 4173-4179 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T47 4203-4204 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 4253-4259 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T49 4331-4334 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T50 4340-4343 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T51 4345-4352 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cells
T52 4381-4383 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T53 4456-4463 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T54 4760-4766 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T55 4770-4771 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 5163-5171 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T57 5258-5263 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 5347-5351 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T59 5651-5659 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T60 5697-5703 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T61 5799-5802 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes PAN
T62 5831-5833 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T63 5878-5885 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T64 6163-6164 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 6189-6196 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T66 6388-6396 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T67 6902-6904 http://purl.obolibrary.org/obo/CLO_0008491 denotes ps
T68 6999-7001 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T69 7062-7064 http://purl.obolibrary.org/obo/CLO_0008491 denotes ps
T70 7122-7124 http://purl.obolibrary.org/obo/CLO_0001562 denotes Ǻ2
T71 7122-7124 http://purl.obolibrary.org/obo/CLO_0001563 denotes Ǻ2
T72 7168-7169 http://purl.obolibrary.org/obo/CLO_0001020 denotes Ǻ
T73 7232-7233 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 7242-7244 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T75 7293-7298 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T76 8194-8200 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T77 8358-8361 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes PAN
T78 8799-8807 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T79 9187-9194 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T80 9259-9260 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 9308-9309 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 9409-9413 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T83 9471-9475 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T84 9523-9524 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T85 9576-9577 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 9936-9943 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T87 10343-10351 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T88 10912-10916 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T89 10947-10948 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T90 10982-10983 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T91 11017-11018 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T92 11352-11353 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 11498-11502 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T94 11511-11512 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T95 11610-11611 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T96 11987-11988 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T97 12036-12037 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T98 12085-12089 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T99 12133-12137 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T100 12182-12183 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T101 12231-12232 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T102 12471-12472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 12488-12494 http://purl.obolibrary.org/obo/CL_0000084 denotes T-Cell
T104 12782-12783 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 12935-12936 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T106 13045-13046 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 13215-13216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 13367-13368 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T109 13510-13511 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 13873-13874 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 14012-14013 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 14257-14275 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T113 14257-14275 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T114 14367-14368 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 14501-14507 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T116 14637-14638 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T117 14870-14876 http://purl.obolibrary.org/obo/CLO_0001627 denotes Å as a
T118 14906-14907 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T119 14938-14939 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T120 14964-14982 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T121 14964-14982 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T122 15015-15019 http://purl.obolibrary.org/obo/CLO_0001869 denotes B. B
T123 15059-15077 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T124 15059-15077 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T125 15105-15106 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T126 15182-15200 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T127 15182-15200 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T128 15233-15237 http://purl.obolibrary.org/obo/CLO_0002709 denotes D. B
T129 15277-15295 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T130 15277-15295 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T131 15499-15505 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T132 15619-15626 http://purl.obolibrary.org/obo/PR_000018263 denotes Peptide
T133 15967-15968 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T134 15973-15974 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T135 16024-16025 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 16113-16119 http://purl.obolibrary.org/obo/CL_0000084 denotes T-Cell
T137 16137-16138 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T138 16253-16254 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T139 16572-16573 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 16815-16816 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T141 16854-16858 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T142 16893-16894 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T143 17103-17104 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 17189-17190 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T145 17195-17196 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T146 17289-17290 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T147 17374-17375 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T148 17680-17681 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 17781-17788 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T150 18178-18183 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T151 18412-18414 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T152 18680-18688 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T153 18703-18709 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T154 18758-18760 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T155 18959-18964 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T156 19207-19208 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T157 19265-19271 http://purl.obolibrary.org/obo/CL_0000084 denotes T–Cell
T158 19346-19347 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T159 19447-19454 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T160 19557-19558 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 19628-19634 http://purl.obolibrary.org/obo/CL_0000084 denotes T-Cell
T162 19737-19738 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T163 19749-19750 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T164 19776-19785 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T165 19857-19861 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T166 19870-19871 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T167 19914-19917 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T168 19923-19926 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T169 19935-19942 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T170 20079-20085 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T171 20551-20558 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T172 20734-20739 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T173 20740-20762 http://purl.obolibrary.org/obo/UBERON_0004802 denotes respiratory epithelium
T174 20837-20839 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T175 20876-20882 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T176 21213-21214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T177 21313-21320 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T178 21703-21704 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T179 22117-22123 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T180 22234-22236 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T181 22385-22386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T182 22556-22564 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T183 22575-22581 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T184 22706-22707 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 22760-22763 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T186 22792-22798 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T187 22833-22836 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T188 22917-22924 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T189 23229-23234 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T190 23238-23245 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9 1486-1493 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T10 1794-1801 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 1865-1872 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T12 1923-1925 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T13 2609-2616 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T14 2756-2761 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T15 2762-2766 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T16 2788-2795 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T17 3027-3032 Chemical denotes bases http://purl.obolibrary.org/obo/CHEBI_22695
T18 3112-3120 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T19 3224-3232 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T20 3290-3298 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T21 3388-3396 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T22 3581-3589 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T23 3653-3661 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T24 3743-3750 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T25 3821-3829 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T26 3902-3910 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T27 4478-4485 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 4498-4505 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T29 4569-4571 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T30 4604-4612 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T31 4803-4810 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T32 4853-4860 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T33 5064-5072 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T34 5091-5098 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T35 5106-5113 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T36 5150-5157 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T37 5172-5184 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T38 5286-5294 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T39 5339-5346 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T40 5371-5378 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T41 5393-5395 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T42 5471-5478 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T43 5514-5521 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T44 5614-5621 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T45 5660-5672 Chemical denotes Glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T46 5704-5711 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T47 5756-5763 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T48 5799-5802 Chemical denotes PAN http://purl.obolibrary.org/obo/CHEBI_53571|http://purl.obolibrary.org/obo/CHEBI_61639
T50 5878-5885 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T51 5943-5945 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T52 6337-6340 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T54 6388-6396 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T55 6876-6887 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T56 6876-6881 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T57 6882-6887 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T58 6999-7001 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T59 7023-7028 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T60 7149-7154 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T61 7155-7161 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T63 7162-7167 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T64 7242-7244 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T65 7781-7783 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T66 8014-8016 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T67 8245-8253 Chemical denotes allergen http://purl.obolibrary.org/obo/CHEBI_50904
T68 8254-8262 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T69 8358-8361 Chemical denotes PAN http://purl.obolibrary.org/obo/CHEBI_53571|http://purl.obolibrary.org/obo/CHEBI_61639
T71 8594-8596 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T72 8799-8807 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T73 8878-8880 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T74 9162-9164 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T75 9187-9194 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T76 9707-9709 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T77 9745-9747 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T78 9910-9912 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T79 9917-9919 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T80 9936-9943 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T81 10343-10351 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T82 10418-10420 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T83 10493-10500 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T84 10567-10570 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T86 10840-10842 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T87 10880-10882 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T88 11298-11305 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T89 11332-11334 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T90 11449-11456 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T91 11570-11577 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T92 11667-11674 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T93 11762-11764 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T94 12536-12538 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T95 12555-12563 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T96 12905-12912 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T97 13017-13024 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T98 13047-13055 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T99 13124-13129 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T100 13153-13166 Chemical denotes Glutamic acid http://purl.obolibrary.org/obo/CHEBI_18237
T101 13162-13166 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T102 13171-13177 Chemical denotes lysine http://purl.obolibrary.org/obo/CHEBI_18019|http://purl.obolibrary.org/obo/CHEBI_25094
T104 13217-13221 Chemical denotes salt http://purl.obolibrary.org/obo/CHEBI_24866|http://purl.obolibrary.org/obo/CHEBI_26710
T106 13242-13253 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T107 13242-13247 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T108 13248-13253 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T109 13337-13344 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T110 13449-13457 Chemical denotes cysteine http://purl.obolibrary.org/obo/CHEBI_15356
T111 13481-13488 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T112 13512-13520 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T113 13589-13594 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T114 13608-13619 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T115 13608-13613 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T116 13614-13619 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T117 13703-13710 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T118 13772-13780 Chemical denotes Tyrosine http://purl.obolibrary.org/obo/CHEBI_17895|http://purl.obolibrary.org/obo/CHEBI_18186
T120 13789-13798 Chemical denotes Glutamine http://purl.obolibrary.org/obo/CHEBI_28300
T121 13819-13825 Chemical denotes Serine http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_17822
T123 13845-13852 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T124 13875-13883 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T125 13952-13957 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T126 14014-14018 Chemical denotes salt http://purl.obolibrary.org/obo/CHEBI_24866|http://purl.obolibrary.org/obo/CHEBI_26710
T128 14039-14050 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T129 14039-14044 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T130 14045-14050 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T131 14257-14275 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T132 14257-14267 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T133 14257-14262 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T134 14263-14267 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T135 14799-14806 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T136 14807-14813 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T137 14964-14982 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T138 14964-14974 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T139 14964-14969 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T140 14970-14974 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T141 15059-15077 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T142 15059-15069 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T143 15059-15064 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T144 15065-15069 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T145 15182-15200 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T146 15182-15192 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T147 15182-15187 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T148 15188-15192 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T149 15277-15295 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T150 15277-15287 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T151 15277-15282 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T152 15283-15287 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T153 15609-15617 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T154 15619-15626 Chemical denotes Peptide http://purl.obolibrary.org/obo/CHEBI_16670
T155 15636-15643 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T156 16467-16469 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T157 16709-16719 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T158 16715-16719 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T159 17576-17583 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T160 17781-17788 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T161 18184-18192 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T162 18680-18688 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T163 18710-18717 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T164 18894-18901 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T165 19084-19092 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T166 19471-19483 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T167 19569-19574 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T168 19578-19586 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T169 19677-19679 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T170 19761-19763 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T171 19829-19831 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T172 20101-20104 Chemical denotes DTH http://purl.obolibrary.org/obo/CHEBI_16398
T173 20626-20633 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T174 20689-20700 Chemical denotes Angiotensin http://purl.obolibrary.org/obo/CHEBI_2719
T175 21113-21120 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T176 21313-21320 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T177 21544-21551 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T178 21820-21827 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T179 21832-21838 Chemical denotes nucleo http://purl.obolibrary.org/obo/CHEBI_33252
T180 21846-21853 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T181 21927-21935 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T182 22034-22042 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T183 22124-22131 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T184 22183-22191 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T185 22291-22294 Chemical denotes HMM http://purl.obolibrary.org/obo/CHEBI_24564
T186 22556-22564 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T187 22658-22665 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T188 22752-22759 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T189 22917-22924 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1407-1431 http://purl.obolibrary.org/obo/GO_0002250 denotes adaptive immune response
T2 1416-1431 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T3 2343-2358 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 3259-3272 http://purl.obolibrary.org/obo/GO_0032774 denotes RNA synthesis
T5 3263-3272 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T6 3436-3453 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T7 3436-3453 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T8 3474-3488 http://purl.obolibrary.org/obo/GO_0019068 denotes viral assembly
T9 3506-3515 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T10 3506-3515 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T11 3520-3532 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T12 3853-3870 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T13 3853-3870 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T14 3875-3881 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T15 3934-3946 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T16 12569-12578 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T17 16526-16541 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T18 19928-19934 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T19 20079-20099 http://purl.obolibrary.org/obo/GO_0042098 denotes T-cell proliferation
T20 20081-20099 http://purl.obolibrary.org/obo/GO_0008283 denotes cell proliferation
T21 22215-22232 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T22 22215-22232 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T14 0-15 Sentence denotes 1 Introduction
T15 16-201 Sentence denotes The outbreak of COVID-19 in the Hubei region of the Chinese city of Wuhan [37] has resulted in a difficult situation for the global populace and for the World Health Organization (WHO).
T16 202-303 Sentence denotes On 30 Jan 2020, WHO declared an emergency regarding COVID-19 spread, prevention, and control [28,29].
T17 304-416 Sentence denotes As of 20 March 2020, there are over 240,000 cases and over 10,000 confirmed deaths, affecting 181 countries [9].
T18 417-601 Sentence denotes Present updates indicate that there are over 1 million confirmed cases and over 100,000 deaths worldwide [39] (information is obtained from https://www.worldometers.info/coronavirus/).
T19 602-856 Sentence denotes The coronavirus is an RNA type virus with positive sense strand feature and is associated with the Coronaviridae family under order Nidovirales, and is found to be dispersed among Primate order, members of class Mammalia, and specifically in humans [31].
T20 857-1072 Sentence denotes Severe acute respiratory syndrome coronavirus (SARS-CoV) [11,21,22] and Middle East respiratory disorder coronavirus (MERS-CoV) [7,40], classified as β-coronaviruses, are found to be related to the novel SARS-COV-2.
T21 1073-1150 Sentence denotes Until now, there has been no efficacious therapy to regulate its spread [24].
T22 1151-1319 Sentence denotes Investigating its spread across continents and the vulnerability, there is an urgent need to craft vaccines for reinforcing immune defense against the SARS-COV-2 virus.
T23 1320-1442 Sentence denotes One of the strategies to combat it is the development of vaccines that can initiate an adaptive immune response in humans.
T24 1443-1605 Sentence denotes Here an attempt has been made to design an epitope based vaccine directed at SARS-COV-2, by analyzing the proteome of the virus by using Immuno-informatics tools.
T25 1606-1858 Sentence denotes In this study, we deployed the use of various bioinformatics servers and Immuno-informatics tools for identifying and recognizing the T-cell epitopes from the intensive study of available protein sequences and structures that are related to SARS-COV-2.
T26 1859-2138 Sentence denotes These epitope stretches can interact with MHC Class I and Class II HLA alleles; further validation of epitopes was analyzed by Ramachandran Plot analysis, Antigenicity parameters evaluation, Toxicity analysis, Population coverage, Molecular dynamics, and ProtParam analysis [19].
T27 2139-2280 Sentence denotes This approach is an excellent method in modern vaccine design, as it provides a lead over classical trial and error methods of wet labs [23].
T28 2281-2430 Sentence denotes We tried to identify T-cell epitopes that can elicit a robust immune response in the global human population and act as potential vaccine candidates.
T29 2431-2554 Sentence denotes However, the ability of these epitopes to act as a vaccine candidate needs to be analyzed in Molecular biology lab studies.
T30 2555-2660 Sentence denotes Our investigation can open new dimensions in crafting peptide-based vaccine regimens for Novel SARS-COV2.
T31 2661-2735 Sentence denotes The greatest decline in virus expansion was noted following ORF3a removal.
T32 2736-2941 Sentence denotes ORF7a encodes a 122-amino-acid type I transmembrane protein and structural studies disclose a packed seven-stranded β sandwich comparable in fold and topology to members of the immunoglobulin super family.
T33 2942-3033 Sentence denotes SARS-CoV is an enveloped, positive-stranded RNA virus with a genome of around 29,700 bases.
T34 3034-3543 Sentence denotes The genome incorporates at least 14 open reading frames (ORFs) that encode 28 proteins in three distinct classes: two large polyproteins P1a and P1ab that are cleaved into 16 non-structural proteins (nsp1–nsp16) during viral RNA synthesis; four structural proteins (S, E, M and N) that are necessary for viral entrance and gathering; and eight accessory proteins that are assumed to be dispensable for viral replication, but may facilitate viral assembly and take part in virulence and pathogenesis (Fig. 1 ).
T35 3544-3607 Sentence denotes Fig. 1 Genome organization and viral proteins of SARS-CoV [44].
T36 3608-3887 Sentence denotes In our investigatory study, out of five, two proteins namely ORF-3a and ORF-7a specific to SARS-COV-2 were found to be putative T-cell epitope determinants that create useful information to distinguish, and these proteins are also important for viral replication and growth [41].
T37 3888-4012 Sentence denotes Both of these proteins may influence in viral pathogenesis and disease spread, although the literature lacks unanimity [43].
T38 4013-4155 Sentence denotes B-cell epitopes prediction is still considered to be untrustworthy for both linear and conformational epitopes as compared to T-cell epitopes.
T39 4156-4230 Sentence denotes Furthermore, the B-cell epitopes do not elicit a strong antibody response.
T40 4231-4305 Sentence denotes For this reason, only T-cell epitopes are considered in the present study.
T41 4306-4387 Sentence denotes It is capable to produce CD4+ and CD8+ T-cells with long-lasting response [45]. .
T42 4388-4577 Sentence denotes In one of the recent studies, epitopes were designed, but they have focused on the single protein (i.e. SPIKE protein) to generate multiple epitopes like 13 for MHC I and 3 for MHC II [46].
T43 4578-4780 Sentence denotes We have analyzed multiple proteins to screen only effective epitopes based on various in-silico filters, to provide the most appropriate and authentic epitopes, which can be further tested in a wet lab.
T44 4782-4796 Sentence denotes 2 Methodology
T45 4798-4847 Sentence denotes 2.1 Protein retrieval and allergenicity analysis
T46 4848-5050 Sentence denotes Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8].
T47 5051-5269 Sentence denotes The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].
T48 5270-5338 Sentence denotes Table 1 List of proteins selected for SARS COV-2 with allergenicity.
T49 5339-5370 Sentence denotes Protein Gene Bank accession no.
T50 5371-5451 Sentence denotes Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen
T51 5452-5496 Sentence denotes QHD43418.1 Envelop Protein 0.87 Non-Allergen
T52 5497-5539 Sentence denotes QHD43417.1 ORF3a Protein 0.84 Non-Allergen
T53 5540-5596 Sentence denotes QHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen
T54 5597-5639 Sentence denotes QHD43421.1 ORF7a protein 0.80 Non-Allergen
T55 5640-5690 Sentence denotes QHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen
T56 5692-5742 Sentence denotes 2.2 T-cell epitope prediction for MHC HLA alleles
T57 5743-6048 Sentence denotes IEDB (Immune epitope database) [20] along with NetMHCII PAN 3.2 and NETMHC 4.0 servers [18] were effectively used for finding putative peptide sequences that were aimed to interact with the MHC Class II and I HLA alleles, respectively (because of efficient algorithms based on artificial neural networks).
T58 6049-6205 Sentence denotes The VaxiJen score is determined for screening the best antigenic epitopes using the VaxiJen online tool [10] with a threshold ≥ 1.0 for the viruses’ domain.
T59 6207-6234 Sentence denotes 2.3 Structural prediction:
T60 6235-6272 Sentence denotes Putative epitopes and MHC HLA alleles
T61 6273-6467 Sentence denotes The epitopes 3D structural findings were conducted by using the PEP-FOLD-3.5 server [25,33,34] and MHC HLA Allelic peptides tertiary or 3D structure were obtained from the RCSB-PDB database [4].
T62 6469-6500 Sentence denotes 2.4 Molecular docking analysis
T63 6501-6718 Sentence denotes The selected epitopes and HLA complexes were docked for calculating refined interactions and binding energies, along with atomic contact energy (ACE), by using two docking web-servers: DINC 2.0 [2] and PatchDock [32].
T64 6720-6781 Sentence denotes 2.5 Molecular dynamics-simulation analysis of docked complex
T65 6782-6946 Sentence denotes Molecular dynamics study was conducted to analyze RMSD values and atomic fluctuations for all amino acids under the 100 ps time frame by deploying the MDWeb server.
T66 6947-7057 Sentence denotes MDWeb server was deployed to analyze Coarse grained MD Brownian dynamics (C-alpha) with specifications → Time:
T67 7058-7304 Sentence denotes 100 ps, output frequency (steps) = 10, force constant (kcal/mol Ǻ2) = 40, distance between alpha carbon atoms(Ǻ) = 3.8 for both the interacting epitopes, and it was based on a GROMACS MD setup with solvation using an Amber-99sb* force-field [17].
T68 7306-7372 Sentence denotes 2.6 Toxicity, Ramachandran-plot, and population coverage analysis
T69 7373-7652 Sentence denotes The ToxinPred server [16] is utilized for determining the toxicity scoring of Epitopes for selecting non-toxic ones; also, the Ramachandran plot analysis was deployed by using the MolProbity 4.2 server [6] to analyze the quantitative presence of residues in the favorable region.
T70 7653-7883 Sentence denotes The Immune Epitope Database (IED) resource web-server of population coverage was used to predict population coverage of the MHC II and MHC I alleles that interact with screened out epitopes based on their restriction database [5].
T71 7884-8032 Sentence denotes The MHCPred web-server was effectively used in quantitative prediction of sorted out epitopes interacting with HLA alleles of MHC II and MHC I [15].
T72 8033-8175 Sentence denotes Thereafter the ProtParam tool [42] of the ExPASy server was used to screen final stable epitopes based on the instability index and half-life.
T73 8177-8187 Sentence denotes 3 Results
T74 8189-8240 Sentence denotes 3.1 T-cell epitopes prediction and VaxiJen scoring
T75 8241-8526 Sentence denotes Non-allergen proteins selected (Table 1) based on allergenicity scores (by deploying AllergenFP 1.0) New to NetMHCII PAN 3.2 and NETMHC 4.0 servers for determining 1-log50k value and affinity values for selecting the best possible pair of epitopes with their corresponding HLA alleles.
T76 8527-8716 Sentence denotes In Table 2 and Table 3 , results for MHC Class I HLA and MHC Class II HLA alleles paired epitopes along with their VaxiJen scores were represented respectively, to obtain putative epitopes.
T77 8717-8761 Sentence denotes The results are self-explanatory in Fig. 2 .
T78 8762-8923 Sentence denotes Graphical representation of selected peptides for docking are based on their interaction with MHC Class I and Class II HLA alleles along with their antigenicity.
T79 8924-9148 Sentence denotes Table 2 Probable antigenic epitopes and MHC I Allele interaction based on NETMHC 4.0 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).
T80 9149-9243 Sentence denotes NCBI-GenBank ID MHC I Allele POS Core peptide 1-LOG50K Affinity(nM) Vaxijen score Antigenicity
T81 9244-9303 Sentence denotes QHD43417.1 HLA-A*68:01 7 FTIGTVTLK 0.853 4.9 2.0317 ANTIGEN
T82 9304-9355 Sentence denotes HLA-A*31:01 125 RLWLCWKCR 0.74 16.59 1.1604 ANTIGEN
T83 9356-9393 Sentence denotes QHD43418.1 – – – – – – NO INTERACTION
T84 9394-9455 Sentence denotes QHD43419.1 HLA-A*11:01 5 GTITVEELK 0.719 20.98 1.0976 ANTIGEN
T85 9456-9518 Sentence denotes QHD43421.1 HLA-A*11:01 109 ITLCFTLKR 0.71 22.97 2.0208 ANTIGEN
T86 9519-9571 Sentence denotes HLA-A*68:01 109 ITLCFTLKR 0.695 27.24 2.0208 ANTIGEN
T87 9572-9624 Sentence denotes HLA-A*23:01 107 VFITLCFTL 0.621 60.42 1.2490 ANTIGEN
T88 9625-9662 Sentence denotes QHD43423.2 – – – – – – NO INTERACTION
T89 9663-9896 Sentence denotes Table 3 Probable antigenic epitopes and MHC II Allele interaction based on NETMHC II PRED 3.2 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).
T90 9897-9993 Sentence denotes NCBI-GenBank ID MHC II Allele POS Core peptide 1- LOG50K Affinity(nM) Vaxijen score Antigenicity
T91 9994-10031 Sentence denotes QHD43417.1 – – – – – – NO INTERACTION
T92 10032-10069 Sentence denotes QHD43418.1 – – – – – – NO INTERACTION
T93 10070-10136 Sentence denotes QHD43419.1 HLA-DRB1*04:01 55 WLLWPVTA 0.282 2375.78 1.0631 ANTIGEN
T94 10137-10203 Sentence denotes QHD43421.1 HLA-DRB1*01:01 74 VYQLRARSV 0.484 267.05 1.3108 ANTIGEN
T95 10204-10260 Sentence denotes HLA-DRB1*07:01 74 VYQLRARSV 0.342 1235.08 1.3108 ANTIGEN
T96 10261-10298 Sentence denotes QHD43423.2 – – – – – – NO INTERACTION
T97 10299-10463 Sentence denotes Fig. 2 Graphical representation of selected peptides for docking based on their interaction with MHC Class I and Class II HLA alleles along with their Antigenicity.
T98 10465-10520 Sentence denotes 3.2 Structural findings of epitope and MHC HLA-Alleles
T99 10521-10662 Sentence denotes Epitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database.
T100 10663-10754 Sentence denotes In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.
T101 10755-10843 Sentence denotes Table 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.
T102 10844-10907 Sentence denotes Allele Name Template structure (PDB-ID) Crystal structure/Model
T103 10908-10942 Sentence denotes HLA-A*11:01 2HN7 CRYSTAL STRUCTURE
T104 10943-10977 Sentence denotes HLA-A*23:01 3I6L CRYSTAL STRUCTURE
T105 10978-11012 Sentence denotes HLA-A*31:01 3RL1 CRYSTAL STRUCTURE
T106 11013-11047 Sentence denotes HLA-A*68:01 6PBH CRYSTAL STRUCTURE
T107 11048-11085 Sentence denotes HLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE
T108 11086-11123 Sentence denotes HLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE
T109 11124-11161 Sentence denotes HLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE
T110 11163-11194 Sentence denotes 3.3 Molecular docking analysis
T111 11195-11412 Sentence denotes It was found that FTIGTVTLK, ITLCFTLKR epitopes interacted with MHC class I HLA Alleles, and VYQLRARSV epitope interacted with MHC Class II HLA alleles with a perfect binding score and ACE values as shown in Table 5 .
T112 11413-11634 Sentence denotes The ITLCFTLKR Epitope of the ORF-7A protein exhibits binding with 2 HLA alleles (HLA-A*11:01, HLA-A*68:01) of MHC Class I, while FTIGTVTLK Epitope of ORF-3a protein interact with 1 HLA Allele (HLA-A*68:01) of MHC Class I.
T113 11635-11772 Sentence denotes The VYQLRARSV Epitope of ORF-7a protein interacts clearly with 2 HLA Alleles (HLA-DRB1*01:01, HLA-DRB1*07:01) of the MHC Class II domain.
T114 11773-11897 Sentence denotes Table 5 Binding Energies, Ace Values for Docked Complexes based on DINC Server and PatchDock Analysis for Putative Epitopes.
T115 11898-11972 Sentence denotes Epitope HLA Allele Binding score (kcal/mol) Patch dock score ACE Selection
T116 11973-12021 Sentence denotes FTIGTVTLK HLA-A*68:01 −8.80 8066 178.91 Selected
T117 12022-12070 Sentence denotes RLWLCWKCR HLA-A*31:01 −4.80 8916 117.53 Rejected
T118 12071-12118 Sentence denotes GTITVEELK HLA-A*11:01 −3.80 8040 78.78 Rejected
T119 12119-12167 Sentence denotes ITLCFTLKR HLA-A*11:01 −3.70 8206 −25.88 Selected
T120 12168-12216 Sentence denotes ITLCFTLKR HLA-A*68:01 −7.60 8136 184.55 Selected
T121 12217-12266 Sentence denotes VFITLCFTL HLA-A*23:01 −4.40 7706 −134.91 Rejected
T122 12267-12318 Sentence denotes WLLWPVTLA HLADRB1*04:01 −8.60 9432 −150.96 Rejected
T123 12319-12370 Sentence denotes VYQLRARSV HLADRB1*01:01 −6.20 6874 −168.74 Selected
T124 12371-12421 Sentence denotes VYQLRARSV HLADRB1*07:01 −6.20 6842 262.74 Selected
T125 12422-12622 Sentence denotes In Fig. 3, Fig. 4, Fig. 5 , interactions between a selected three T-Cell epitopes with respective MHC Class I and II HLA-Alleles via hydrogen bond formation and van der Waals interactions is depicted.
T126 12623-12763 Sentence denotes After positive docking results, these epitopes were subjected to further Molecular dynamic simulation and biochemical parameters assessment.
T127 12764-12859 Sentence denotes Fig. 6 represents a graphical plot of binding scores for epitopes interacting with HLA-Alleles.
T128 12860-12964 Sentence denotes Fig. 3 FTIGTVTLK Epitope interaction with an antigen-binding pocket of HLA-A*68:01, of MHC I-HLA Allele.
T129 12965-13291 Sentence denotes Here, Threonine at 2nd,5th, and 7th position in the epitope generate preferably a hydrogen bond due to the presence of partially charged positive and negative atoms, and also 4th position Glutamic acid and lysine at 8th position side chains can form a salt bridge, while other amino acids result in van der Waals interactions.
T130 13292-13396 Sentence denotes Fig. 4 ITLCFTLKR Epitope interaction with an antigen-binding pocket of HLA-A*68:01, of MHC I-HLA Allele.
T131 13397-13657 Sentence denotes Here, Threonine at 2nd and 6th position, as well as cysteine at the 4th position in epitope, generate preferably a hydrogen bond due to the presence of partially charged positive and negative atoms, while other amino acids result in van der Waals interactions.
T132 13658-14088 Sentence denotes Fig. 5 VYQLRARSV Epitope interaction with an antigen-binding pocket of HLA-DRB1*07:01, of MHCII-HLA Allele, Here, Tyrosine at 2nd, Glutamine at 3rd position and Serine at 8th position in epitope generate preferably a hydrogen bond due to the presence of partially charged positive and negative atoms, and 5th and 7tharginine residue side chains can form a salt bridge, while other amino acids result in van der Waals interactions.
T133 14089-14168 Sentence denotes Fig. 6 Binding energy graphical plot for selected Epitope and HLA-Allelic pair.
T134 14170-14217 Sentence denotes 3.4 Molecular dynamics and simulation analysis
T135 14218-14407 Sentence denotes RMSD values and Atomic fluctuation per amino acid residue were obtained for Epitopes interacting with the HLA-Allele structure; this analysis allows a perfect pair selection and validation.
T136 14408-14551 Sentence denotes Moreover, only two Epitope pairs, i.e., ITLCFTLKR and VYQLRARSV, were identified as probable T-cell epitopes and as putative vaccine specimens.
T137 14552-14745 Sentence denotes Fig. 7 shows the RMSD Plot and Atomic fluctuation per residue for the ITLCFTLKR- HLA-A*68:01 complex, the RMSD Plot and Atomic fluctuation per residue for the VYQLRARSV- HLA-DRB1*07:01 complex.
T138 14746-14898 Sentence denotes Both results were positive as best interactions, for protein-ligand docked complexes must possess RMSD values from 0 to 1.0 Å as a preferred range [13].
T139 14899-14908 Sentence denotes Fig. 7 A.
T140 14909-15017 Sentence denotes RMSD Plot for ITLCFTLKR- HLA-A*68:01 complex, for each amino acid residue by Molecular dynamics analysis, B.
T141 15018-15131 Sentence denotes B-Factor (atomic fluctuation) values per amino acid residue for Epitope ITLCFTLKR- HLA-A*68:01 docked complex, C.
T142 15132-15235 Sentence denotes RMSD Plot for VYQLRARSV- HLA-DRB1*07:01, for each amino acid residue by Molecular dynamics analysis, D.
T143 15236-15349 Sentence denotes B-Factor (atomic fluctuation) values per amino acid residue for Epitope VYQLRARSV- HLA-DRB1*07:01 docked complex.
T144 15351-15434 Sentence denotes 3.5 Toxicity analysis, Ramachandran Plot analysis, and population coverage results
T145 15435-15567 Sentence denotes ToxinPred 4.0 server results (in Table 6 .) represent Finalized T-cell Epitopes that were nontoxic from the biochemical perspective.
T146 15568-15618 Sentence denotes Table 6 Results of ToxinPred on probable antigens.
T147 15619-15694 Sentence denotes Peptide/Probable antigen SVM score Hydrophilicity Molecular weight Toxicity
T148 15695-15733 Sentence denotes FTIGTVTLK −1.36 −1.23 979.32 NON-TOXIN
T149 15734-15771 Sentence denotes GTITVEELK −0.98 0.34 989.27 NON-TOXIN
T150 15772-15811 Sentence denotes ITLCFTLKR −1.32 −0.41 1094.51 NON-TOXIN
T151 15812-15851 Sentence denotes VFITLCFTL −1.21 −1.52 1056.46 NON-TOXIN
T152 15852-15891 Sentence denotes WLLWPVTLA −1.18 −1.62 1098.49 NON-TOXIN
T153 15892-15931 Sentence denotes VYQLRARSV −1.07 −0.12 1091.40 NON-TOXIN
T154 15932-16129 Sentence denotes Ramachandran plot analysis, Fig. 8 A and B suggest that most of the residues are allowed in a favored region; this gives more confidence in the structural conformation for targeted T-Cell Epitopes.
T155 16130-16139 Sentence denotes Fig. 8 A.
T156 16140-16252 Sentence denotes 99.8% residues of the ITLCFTLKR Epitope were in the allowed and favored region under Ramachandran Plot analysis.
T157 16253-16255 Sentence denotes B.
T158 16256-16368 Sentence denotes 99.8% residues of the VYQLRARSV Epitope were in the allowed and favored region under Ramachandran Plot analysis.
T159 16369-16603 Sentence denotes MHCPred results (Table 7 ) indicate quantitative estimation of IC50 values for both MHC I and MHC II alleles for respective Epitopes shows elicitation of an immune response when this data is deployed in a population coverage analysis.
T160 16604-16696 Sentence denotes Table 7 MHCPred results depict IC50 Values for HLA Alleles and confidence of the prediction.
T161 16697-16810 Sentence denotes HLA Alleles Amino acid groups Predicted -logIC50 (M) Predicted IC50 Value (nM) Confidence of prediction (Max = 1)
T162 16811-16849 Sentence denotes HLA-A*68:01 FTIGTVTLK 7.116 76.56 1.00
T163 16850-16888 Sentence denotes HLA-A*11:01 ITLCFTLKR 7.028 93.76 1.00
T164 16889-16928 Sentence denotes HLA-A*68:01 ITLCFTLKR 6.282 522.40 0.78
T165 16929-16970 Sentence denotes HLA-DRB1*01:01 VYQLRARSV 7.624 23.77 0.89
T166 16971-17013 Sentence denotes HLA-DRB1*07:01 VYQLRARSV 6.734 184.50 0.89
T167 17014-17197 Sentence denotes IEDB population coverage analysis suggests that ITLCFTLKR and VYQLRARSV epitopes exhibit a suitable population coverage, as depicted in the graphical representation of Fig. 9 A and B.
T168 17198-17281 Sentence denotes This allows only two probable Epitopes for the final selection of vaccine crafting.
T169 17282-17291 Sentence denotes Fig. 9 A.
T170 17292-17373 Sentence denotes Graphical representation of population conservancy analysis of ITLCFTLKR Epitope.
T171 17374-17376 Sentence denotes B.
T172 17377-17458 Sentence denotes Graphical representation of population conservancy analysis of VYQLRARSV Epitope.
T173 17459-17610 Sentence denotes In Table 8 , ProtParam analysis further reveals the stability of the considered epitopes and final revelation of one epitope ITLCFTLKR is screened out.
T174 17611-17843 Sentence denotes This particular Epitope exhibits an instability index of 35.68, with a grand average of hydropathicity (GRAVY) calculated was 0.844, and the estimated half-life for this peptide was determined to be 20 h for mammalian reticulocytes.
T175 17844-17893 Sentence denotes Table 8 ProtParam analysis for selected epitopes.
T176 17894-18029 Sentence denotes Selected Epitope GRAVY Score Instability Index (Indication) Estimated Half-Life(Mammalian reticulocytes) Theoretical pI Aliphatic Index
T177 18030-18080 Sentence denotes ITLCFTLKR 0.844 35.68(Stable) 20 Hours 9.51 130.00
T178 18081-18136 Sentence denotes VYQLRARSV −0.067 70.73(Unstable) 100 Hours 10.83 118.89
T179 18138-18151 Sentence denotes 4 Discussion
T180 18152-18416 Sentence denotes In this study, SARS-COV-2 virus proteins were analyzed by using In-silico methods, and can be further utilized for vaccine trials as per earlier successes in the case of similar SARS-COV studies, and later observed in the development of polyclonal antibodies [27].
T181 18417-18623 Sentence denotes Here we obtained two epitopes ITLCFTLKR and VYQLRARSV after successful docking and molecular dynamics simulation; furthermore, these two epitopes were subjected to population coverage and toxicity analysis.
T182 18624-18762 Sentence denotes Similarly, in another study, for MERS-COV, nucleocapsid peptides were used for T-cell epitope prediction, and found to be successful [36].
T183 18763-19056 Sentence denotes The IEDB and NCBI-GenBank database were fully deployed to analyze sequence homology, to predict targets for COV-2 in case of viral protein identification as per the related studies [14], as ViPR (Virus Pathogen database analysis resource) are also dependent on IEDB and GenBank primarily [30].
T184 19057-19342 Sentence denotes We analyzed five different proteins in SARS-COV-2 for the present study (because of their availability in the NCBI-GenBank database and importance in a structural role in SARS-COV-2 [14] and finally revealed T–Cell epitopes that can be used for wet lab considerations and time savings.
T185 19343-19704 Sentence denotes In a very recent study, different epitopes were found for SARS-COV-2, based on In-silico approaches and focused on only surface glycoprotein [3], but in our research study there are many differences as we analyzed a different group of proteins from SARS-COV-2 to sort out short length T-Cell epitopes specific to MHC I as well as MHC II diversified HLA-Alleles.
T186 19705-19913 Sentence denotes It is reported for SARS-CoV HLA-B*4601, HLA-B*0703, HLA-DR B1*1202 are activated [26], interaction with different MHC I and II allelic forms namely HLA-A*11:01, HLA-A*68:01, HLA-DRB1*01:01 and HLA-DRB1*07:01.
T187 19914-19943 Sentence denotes CD4+ and CD8+ memory T cells.
T188 19944-20144 Sentence denotes Based on prior literature, it is anticipated that it can persist for four years as in the case of SARS-CoV recovered individuals, show T-cell proliferation, DTH response, and production of IFN-γ [12].
T189 20145-20205 Sentence denotes We surmise that our screen can be more effective and useful.
T190 20206-20517 Sentence denotes Primarily molecular docking reveals three Epitopes, but as we proceed to Molecular dynamic simulations, it reveals best interactions for two epitopes i.e., ITLCFTLKR and VYQLRARSV, with acceptable stability analyzed with the help of MDWeb and identified by using best available tools with easy-to-apply methods.
T191 20518-21002 Sentence denotes One recent study was found to be focused on developing monoclonal antibodies like CR-3022 against the Spike protein of SARS-COV-2 that also exhibits interaction with ACE (Angiotensin Converting Enzyme) enzyme of the Human respiratory epithelium and requires complex neutralizing mechanisms for several binding domains [35], whereas in our study the putative T-cell epitopes can directly interact with MHC-Allelic sets that can be useful for developing immunization against SARS-COV-2.
T192 21003-21147 Sentence denotes ProtParam [42] analysis further reveals the stability of the considered epitopes, and final revelation of one epitope ITLCFTLKR is screened out.
T193 21148-21375 Sentence denotes This particular Epitope shows an instability index of 35.68 with a grand average of hydropathicity (GRAVY) calculated as 0.844, and the estimated half-life for this peptide was determined to be 20 h for mammalian reticulocytes.
T194 21376-21514 Sentence denotes Satisfactory population coverage was observed for targeted epitopes - HLA allelic complexes at the worldwide, South Asia, and India level.
T195 21515-21622 Sentence denotes The biochemical integrity in epitope structure was further evident by deploying Ramachandran plot analysis.
T196 21623-21699 Sentence denotes Both epitopes were non-toxic, non-allergenic, and possess good antigenicity.
T197 21700-22238 Sentence denotes In a similar study of the preliminary analysis of COVID-19 vaccine targets [1] the investigators tried to use the spike protein and nucleo-capsid protein sequences of SARS-COV that are homologous to some extant with SARS-COV-2 proteins to determine multiple different epitopes for Vaccine prediction, but in our study out of five two proteins namely ORF-3a and ORF-7a specific to SARS-COV-2 were found to be putative T-cell epitope determinants that create useful information; these proteins are also important for viral replication [41].
T198 22239-22463 Sentence denotes Both biochemical parameters, as well as an advanced HMM and ANN based algorithm in selected Immuno-informatics tools, were very useful to present a clear picture of predicted epitopes for crafting vaccine against SARS-COV-2.
T199 22464-22632 Sentence denotes The only limitation that can be considered as future scope is that these easily synthesized peptides should be tested with In-vitro study for more practical validation.
T200 22634-22647 Sentence denotes 5 Conclusion
T201 22648-22735 Sentence denotes ITLCFTLKR epitope was selected for crafting and designing a vaccine against SARS-COV-2.
T202 22736-22900 Sentence denotes This particular epitope has good antigenicity, exhibits active binding with MHC HLA-Alleles, and has maximum population coverage for different geographical regions.
T203 22901-23009 Sentence denotes Therefore, this peptide can be further used in vaccine design against SARS-COV-2 after wet lab verification.
T204 23010-23152 Sentence denotes This novel approach can also assist life science research groups to reduce time, monetary expenditures, as well as physical hit-trial efforts.
T205 23154-23170 Sentence denotes Ethical approval
T206 23171-23246 Sentence denotes I confirm that authors did not perform any experiments on human or animals.
T207 23248-23281 Sentence denotes Declaration of competing interest
T208 23282-23363 Sentence denotes I confirm that the authors hereby declare they that have no conflict of interest.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T21 32-40 SP_7 denotes COVID-19
T22 254-262 SP_7 denotes COVID-19
T23 380-386 GO:0016265 denotes deaths
T24 505-511 GO:0016265 denotes deaths
T25 587-598 NCBITaxon:11118 denotes coronavirus
T26 606-617 NCBITaxon:11118 denotes coronavirus
T27 633-638 NCBITaxon:10239 denotes virus
T28 701-714 NCBITaxon:11118 denotes Coronaviridae
T29 734-745 NCBITaxon:99883 denotes Nidovirales
T30 782-789 NCBITaxon:9443 denotes Primate
T31 814-822 NCBITaxon:40674 denotes Mammalia
T32 844-850 NCBITaxon:9606 denotes humans
T33 857-869 SP_10 denotes Severe acute
T34 870-881 SP_10;UBERON:0001004 denotes respiratory
T35 882-902 SP_10 denotes syndrome coronavirus
T36 904-912 SP_10 denotes SARS-CoV
T37 941-952 UBERON:0001004 denotes respiratory
T38 962-973 NCBITaxon:11118 denotes coronavirus
T39 975-983 SP_9 denotes MERS-CoV
T40 1009-1022 NCBITaxon:11118 denotes coronaviruses
T41 1061-1071 SP_7 denotes SARS-COV-2
T42 1125-1133 GO:0065007 denotes regulate
T43 1275-1281 UBERON:0002405 denotes immune
T44 1282-1289 GO:0006952 denotes defense
T45 1302-1312 SP_7 denotes SARS-COV-2
T46 1313-1318 NCBITaxon:10239 denotes virus
T47 1407-1415 GO:0002250 denotes adaptive
T48 1416-1422 GO:0002250;UBERON:0002405 denotes immune
T49 1423-1431 GO:0002250 denotes response
T50 1435-1441 NCBITaxon:9606 denotes humans
T51 1486-1493 BV_9 denotes epitope
T52 1520-1530 SP_7 denotes SARS-COV-2
T53 1565-1570 NCBITaxon:10239 denotes virus
T54 1740-1746 CL:0000084;BV_24 denotes T-cell
T55 1747-1755 BV_24 denotes epitopes
T56 1847-1857 SP_7 denotes SARS-COV-2
T57 1865-1872 BV_9 denotes epitope
T58 1901-1912 GO:0042613 denotes MHC Class I
T59 1930-1937 SO:0001023 denotes alleles
T60 1961-1969 BV_9 denotes epitopes
T61 2186-2200 BV_26 denotes vaccine design
T62 2302-2308 CL:0000084;BV_24 denotes T-cell
T63 2309-2317 BV_24 denotes epitopes
T64 2343-2349 UBERON:0002405;GO:0006955 denotes immune
T65 2350-2358 GO:0006955 denotes response
T66 2373-2378 SP_6;NCBITaxon:9606 denotes human
T67 2461-2469 BV_9 denotes epitopes
T68 2650-2659 SP_7 denotes SARS-COV2
T69 2685-2690 NCBITaxon:10239 denotes virus
T70 2736-2741 SO:0000236 denotes ORF7a
T71 2774-2787 GO:0016020 denotes transmembrane
T72 2837-2851 SO:0000984 denotes seven-stranded
T73 2913-2927 GO:0019814 denotes immunoglobulin
T74 2942-2950 SP_10 denotes SARS-CoV
T75 2968-2985 SO:0000984 denotes positive-stranded
T76 2986-2989 BV_22 denotes RNA
T77 2990-2995 BV_22;NCBITaxon:10239 denotes virus
T78 3003-3009 SO:0001026 denotes genome
T79 3038-3044 SO:0001026 denotes genome
T80 3070-3089 SO:0000236 denotes open reading frames
T81 3091-3095 SO:0000236 denotes ORFs
T82 3193-3200 MOP:0000780 denotes cleaved
T83 3234-3238 PR:000014815 denotes nsp1
T84 3239-3244 PR:000000125 denotes nsp16
T85 3253-3258 NCBITaxon:10239 denotes viral
T86 3259-3272 GO:0032774 denotes RNA synthesis
T87 3338-3343 NCBITaxon:10239 denotes viral
T88 3436-3441 NCBITaxon:10239;GO:0006260 denotes viral
T89 3442-3453 GO:0006260 denotes replication
T90 3474-3479 NCBITaxon:10239;GO:0019068 denotes viral
T91 3480-3488 GO:0019068 denotes assembly
T92 3575-3580 NCBITaxon:10239 denotes viral
T93 3593-3601 SP_10 denotes SARS-CoV
T97 3669-3672 SO:0000236 denotes ORF
T98 3680-3683 SO:0000236 denotes ORF
T99 3699-3709 SP_7 denotes SARS-COV-2
T100 3736-3742 CL:0000084 denotes T-cell
T101 3743-3750 BV_9 denotes epitope
T102 3853-3858 NCBITaxon:10239;GO:0006260 denotes viral
T103 3859-3870 GO:0006260 denotes replication
T104 3928-3933 NCBITaxon:10239 denotes viral
T105 4013-4019 CL:0000236;BV_3 denotes B-cell
T106 4020-4028 BV_3 denotes epitopes
T107 4115-4123 BV_9 denotes epitopes
T108 4139-4145 CL:0000084;BV_24 denotes T-cell
T109 4146-4154 BV_24 denotes epitopes
T110 4173-4179 CL:0000236;BV_3 denotes B-cell
T111 4180-4188 BV_3 denotes epitopes
T112 4212-4220 GO:0042571;BV_1;GO:0016064 denotes antibody
T113 4221-4229 BV_1;GO:0016064 denotes response
T114 4253-4259 CL:0000084;BV_24 denotes T-cell
T115 4260-4268 BV_24 denotes epitopes
T116 4331-4334 PR:000001004 denotes CD4
T117 4345-4352 CL:0000084 denotes T-cells
T118 4418-4426 BV_9 denotes epitopes
T119 4528-4536 BV_9 denotes epitopes
T120 4549-4554 GO:0042613 denotes MHC I
T121 4565-4571 GO:0042613 denotes MHC II
T122 4638-4646 BV_9 denotes epitopes
T123 4729-4737 BV_9 denotes epitopes
T124 4928-4938 SP_7 denotes SARS-COV-2
T125 5082-5090 GO:0031975 denotes envelope
T126 5100-5105 PR:000004865 denotes ORF3a
T127 5128-5142 CHEBI:17089;CHEBI:17089 denotes phosphoprotein
T128 5144-5149 PR:P16320 denotes ORF7a
T129 5163-5171 GO:0016020 denotes membrane
T130 5172-5184 CHEBI:17089;CHEBI:17089;BV_11 denotes glycoprotein
T131 5258-5263 NCBITaxon:10239 denotes virus
T135 5308-5318 SP_7 denotes SARS COV-2
T136 5697-5703 CL:0000084 denotes T-cell
T137 5704-5711 BV_9 denotes epitope
T138 5727-5730 GO:0042611 denotes MHC
T139 5735-5742 SO:0001023 denotes alleles
T140 5756-5763 BV_9 denotes epitope
T141 5933-5942 GO:0042613 denotes MHC Class
T142 5956-5963 SO:0001023 denotes alleles
T143 6104-6113 CHEBI:59132;CHEBI:59132 denotes antigenic
T144 6114-6122 BV_9 denotes epitopes
T145 6189-6196 NCBITaxon:10239 denotes viruses
T146 6198-6204 SO:0000417 denotes domain
T147 6244-6252 BV_9 denotes epitopes
T148 6257-6260 GO:0042611 denotes MHC
T149 6265-6272 SO:0001023 denotes alleles
T150 6277-6285 BV_9 denotes epitopes
T151 6372-6375 GO:0042611 denotes MHC
T152 6380-6387 SO:0001023 denotes Allelic
T153 6514-6522 BV_9 denotes epitopes
T154 6531-6540 GO:0032991 denotes complexes
T155 6623-6629 CHEBI:33250;CHEBI:33250 denotes atomic
T156 6774-6781 GO:0032991 denotes complex
T157 6848-6854 CHEBI:33250;CHEBI:33250 denotes atomic
T158 7162-7167 CHEBI:33250;CHEBI:33250 denotes atoms
T159 7202-7210 BV_9 denotes epitopes
T160 7451-7459 BV_9 denotes Epitopes
T161 7664-7671 BV_9 denotes Epitope
T162 7777-7783 GO:0042613 denotes MHC II
T163 7788-7793 GO:0042613 denotes MHC I
T164 7794-7801 SO:0001023 denotes alleles
T165 7834-7842 BV_9 denotes epitopes
T166 7969-7977 BV_9 denotes epitopes
T167 7999-8006 SO:0001023 denotes alleles
T168 8010-8016 GO:0042613 denotes MHC II
T169 8021-8026 GO:0042613 denotes MHC I
T170 8121-8129 BV_9 denotes epitopes
T171 8194-8200 CL:0000084;BV_24 denotes T-cell
T172 8201-8209 BV_24 denotes epitopes
T173 8245-8253 CHEBI:50904;CHEBI:50904 denotes allergen
T174 8480-8488 BV_9 denotes epitopes
T175 8518-8525 SO:0001023 denotes alleles
T176 8564-8575 GO:0042613 denotes MHC Class I
T177 8584-8596 GO:0042613 denotes MHC Class II
T178 8601-8608 SO:0001023 denotes alleles
T179 8616-8624 BV_9 denotes epitopes
T180 8707-8715 BV_9 denotes epitopes
T181 8856-8867 GO:0042613 denotes MHC Class I
T182 8885-8892 SO:0001023 denotes alleles
T196 8941-8950 CHEBI:59132;CHEBI:59132 denotes antigenic
T197 8951-8959 BV_9 denotes epitopes
T198 8964-8967 GO:0042611 denotes MHC
T199 8970-8976 SO:0001023 denotes Allele
T200 9120-9126 SO:0001023 denotes Allele
T201 9680-9689 CHEBI:59132;CHEBI:59132 denotes antigenic
T202 9690-9698 BV_9 denotes epitopes
T203 9703-9709 GO:0042613 denotes MHC II
T204 9710-9716 SO:0001023 denotes Allele
T205 9868-9874 SO:0001023 denotes Allele
T206 10396-10407 GO:0042613 denotes MHC Class I
T207 10425-10432 SO:0001023 denotes alleles
T208 10493-10500 BV_9 denotes epitope
T209 10505-10508 GO:0042611 denotes MHC
T210 10513-10520 SO:0001023 denotes Alleles
T211 10521-10528 BV_9 denotes Epitope
T212 10600-10606 SO:0001023 denotes allele
T218 10774-10777 GO:0042611 denotes MHC
T219 10782-10789 SO:0001023 denotes Alleles
T220 11234-11242 BV_9 denotes epitopes
T221 11259-11270 GO:0042613 denotes MHC class I
T222 11275-11282 SO:0001023 denotes Alleles
T223 11298-11305 BV_9 denotes epitope
T224 11322-11338 GO:0042613 denotes MHC Class II HLA
T225 11339-11346 SO:0001023 denotes alleles
T226 11427-11434 BV_9 denotes Epitope
T227 11442-11445 SO:0000236 denotes ORF
T228 11485-11492 SO:0001023 denotes alleles
T229 11494-11499 PR:000002009 denotes HLA-A
T230 11507-11512 PR:000002009 denotes HLA-A
T231 11523-11532 GO:0042613 denotes MHC Class
T232 11552-11559 BV_9 denotes Epitope
T233 11563-11566 SO:0000236 denotes ORF
T234 11598-11604 SO:0001023 denotes Allele
T235 11606-11611 PR:000002009 denotes HLA-A
T236 11622-11633 GO:0042613 denotes MHC Class I
T237 11649-11656 BV_9 denotes Epitope
T238 11660-11663 SO:0000236 denotes ORF
T239 11704-11711 SO:0001023 denotes Alleles
T240 11713-11721 PR:000002019 denotes HLA-DRB1
T241 11729-11737 PR:000002019 denotes HLA-DRB1
T242 11752-11764 GO:0042613 denotes MHC Class II
T243 11765-11771 SO:0000417 denotes domain
T247 11821-11830 GO:0032991 denotes Complexes
T248 11888-11896 BV_9 denotes Epitopes
T249 12488-12494 CL:0000084;BV_24 denotes T-Cell
T250 12495-12503 BV_24 denotes epitopes
T251 12520-12531 GO:0042613 denotes MHC Class I
T252 12539-12542 PR:000029150 denotes HLA
T253 12543-12550 SO:0001023 denotes Alleles
T254 12661-12669 BV_9 denotes epitopes
T255 12821-12829 BV_9 denotes epitopes
T256 12851-12858 SO:0001023 denotes Alleles
T257 12877-12884 BV_9 denotes Epitope
T258 12905-12912 CHEBI:59132;CHEBI:59132 denotes antigen
T259 12931-12936 PR:000002009 denotes HLA-A
T260 12947-12952 GO:0042613 denotes MHC I
T261 12957-12963 SO:0001023 denotes Allele
T262 13017-13024 BV_9 denotes epitope
T263 13124-13129 CHEBI:33250;CHEBI:33250 denotes atoms
T264 13194-13205 CHEBI:50325;CHEBI:50325 denotes side chains
T265 13217-13221 CHEBI:24866;CHEBI:24866 denotes salt
T266 13309-13316 BV_9 denotes Epitope
T267 13337-13344 CHEBI:59132;CHEBI:59132 denotes antigen
T268 13363-13368 PR:000002009 denotes HLA-A
T269 13379-13384 GO:0042613 denotes MHC I
T270 13389-13395 SO:0001023 denotes Allele
T271 13481-13488 BV_9 denotes epitope
T272 13589-13594 CHEBI:33250;CHEBI:33250 denotes atoms
T273 13675-13682 BV_9 denotes Epitope
T274 13703-13710 CHEBI:59132;CHEBI:59132 denotes antigen
T275 13729-13737 PR:000002019 denotes HLA-DRB1
T276 13748-13753 GO:0042611 denotes MHCII
T277 13758-13764 SO:0001023 denotes Allele
T278 13845-13852 BV_9 denotes epitope
T279 13952-13957 CHEBI:33250;CHEBI:33250 denotes atoms
T280 13991-14002 CHEBI:50325;CHEBI:50325 denotes side chains
T281 14014-14018 CHEBI:24866;CHEBI:24866 denotes salt
T282 14139-14146 BV_9 denotes Epitope
T283 14155-14162 SO:0001023 denotes Allelic
T311 14294-14302 BV_9 denotes Epitopes
T312 14328-14334 SO:0001023 denotes Allele
T313 14427-14434 BV_9 denotes Epitope
T314 14501-14507 CL:0000084;BV_24 denotes T-cell
T315 14508-14516 BV_24 denotes epitopes
T316 14633-14638 PR:000002009 denotes HLA-A
T317 14645-14652 GO:0032991 denotes complex
T318 14722-14730 PR:000002019 denotes HLA-DRB1
T319 14737-14744 GO:0032991 denotes complex
T320 14821-14830 GO:0032991 denotes complexes
T321 14934-14939 PR:000002009 denotes HLA-A
T322 14946-14953 GO:0032991 denotes complex
T323 15028-15034 CHEBI:33250;CHEBI:33250 denotes atomic
T324 15082-15089 BV_9 denotes Epitope
T325 15101-15106 PR:000002009 denotes HLA-A
T326 15120-15127 GO:0032991 denotes complex
T327 15157-15165 PR:000002019 denotes HLA-DRB1
T328 15300-15307 BV_9 denotes Epitope
T329 15319-15327 PR:000002019 denotes HLA-DRB1
T330 15341-15348 GO:0032991 denotes complex
T341 15499-15505 CL:0000084;BV_24 denotes T-cell
T342 15506-15514 BV_24 denotes Epitopes
T345 15609-15617 CHEBI:59132;CHEBI:59132 denotes antigens
T346 16113-16119 CL:0000084;BV_24 denotes T-Cell
T347 16120-16128 BV_24 denotes Epitopes
T348 16172-16179 BV_9 denotes Epitope
T349 16288-16295 BV_9 denotes Epitope
T352 16453-16458 GO:0042613 denotes MHC I
T353 16463-16469 GO:0042613 denotes MHC II
T354 16470-16477 SO:0001023 denotes alleles
T355 16493-16501 BV_9 denotes Epitopes
T356 16526-16532 UBERON:0002405;GO:0006955 denotes immune
T357 16533-16541 GO:0006955 denotes response
T362 16655-16662 SO:0001023 denotes Alleles
T363 17086-17094 BV_9 denotes epitopes
T364 17228-17236 BV_9 denotes Epitopes
T365 17365-17372 BV_9 denotes Epitope
T366 17450-17457 BV_9 denotes Epitope
T369 17539-17547 BV_9 denotes epitopes
T370 17576-17583 BV_9 denotes epitope
T371 17627-17634 BV_9 denotes Epitope
T372 17819-17828 NCBITaxon:40674 denotes mammalian
T373 17829-17842 CL:0000558 denotes reticulocytes
T377 17884-17892 BV_9 denotes epitopes
T378 18167-18177 SP_7 denotes SARS-COV-2
T379 18178-18183 NCBITaxon:10239 denotes virus
T380 18330-18338 SP_10 denotes SARS-COV
T381 18400-18410 GO:0042571 denotes antibodies
T382 18438-18446 BV_9 denotes epitopes
T383 18554-18562 BV_9 denotes epitopes
T384 18657-18665 SP_9 denotes MERS-COV
T385 18703-18709 CL:0000084 denotes T-cell
T386 18710-18717 BV_9 denotes epitope
T387 18838-18846 SO:0000853 denotes homology
T388 18888-18893 NCBITaxon:10239 denotes viral
T389 19096-19106 SP_7 denotes SARS-COV-2
T390 19228-19238 SP_7 denotes SARS-COV-2
T391 19265-19271 CL:0000084;BV_24 denotes T–Cell
T392 19272-19280 BV_24 denotes epitopes
T393 19377-19385 BV_9 denotes epitopes
T394 19401-19411 SP_7 denotes SARS-COV-2
T395 19463-19470 GO:0009986 denotes surface
T396 19471-19483 BV_11;CHEBI:17089;CHEBI:17089 denotes glycoprotein
T397 19592-19602 SP_7 denotes SARS-COV-2
T398 19628-19634 CL:0000084;BV_24 denotes T-Cell
T399 19635-19643 BV_24 denotes epitopes
T400 19656-19661 GO:0042613 denotes MHC I
T401 19673-19679 GO:0042613 denotes MHC II
T402 19696-19703 SO:0001023 denotes Alleles
T403 19724-19732 SP_10 denotes SARS-CoV
T404 19733-19738 PR:000002010 denotes HLA-B
T405 19745-19750 PR:000002010 denotes HLA-B
T406 19757-19760 PR:000029150 denotes HLA
T407 19819-19824 GO:0042613 denotes MHC I
T408 19832-19839 SO:0001023 denotes allelic
T409 19853-19858 PR:000002009 denotes HLA-A
T410 19866-19871 PR:000002009 denotes HLA-A
T411 19879-19887 PR:000002019 denotes HLA-DRB1
T412 19898-19906 PR:000002019 denotes HLA-DRB1
T413 19914-19917 PR:000001004 denotes CD4
T414 19928-19934 GO:0007613;CL:0000813 denotes memory
T415 19935-19942 CL:0000813 denotes T cells
T416 20042-20050 SP_10 denotes SARS-CoV
T417 20061-20072 NCBITaxon:1 denotes individuals
T418 20079-20085 CL:0000084 denotes T-cell
T419 20086-20099 GO:0042098 denotes proliferation
T420 20133-20138 PR:000000017 denotes IFN-γ
T421 20248-20256 BV_9 denotes Epitopes
T422 20347-20355 BV_9 denotes epitopes
T423 20584-20594 GO:0042571 denotes antibodies
T424 20637-20647 SP_7 denotes SARS-COV-2
T425 20734-20739 SP_6;NCBITaxon:9606 denotes Human
T426 20740-20751 UBERON:0000115;GO:0045333 denotes respiratory
T427 20752-20762 UBERON:0000483 denotes epithelium
T428 20828-20835 SO:0000417 denotes domains
T429 20876-20882 CL:0000084;BV_24 denotes T-cell
T430 20883-20891 BV_24 denotes epitopes
T431 20919-20922 GO:0042611 denotes MHC
T432 20923-20930 SO:0001023 denotes Allelic
T433 20991-21001 SP_7 denotes SARS-COV-2
T434 21075-21083 BV_9 denotes epitopes
T435 21113-21120 BV_9 denotes epitope
T436 21164-21171 BV_9 denotes Epitope
T437 21351-21360 NCBITaxon:40674 denotes mammalian
T438 21361-21374 CL:0000558 denotes reticulocytes
T439 21435-21443 BV_9 denotes epitopes
T440 21450-21457 SO:0001023 denotes allelic
T441 21458-21467 GO:0032991 denotes complexes
T442 21544-21551 BV_9 denotes epitope
T443 21628-21636 BV_9 denotes epitopes
T444 21657-21667 CHEBI:50904;CHEBI:50904 denotes allergenic
T445 21750-21758 SP_7 denotes COVID-19
T446 21867-21875 SP_10 denotes SARS-COV
T447 21885-21895 SO:0000853 denotes homologous
T448 21916-21926 SP_7 denotes SARS-COV-2
T449 21968-21976 BV_9 denotes epitopes
T450 22050-22053 SO:0000236 denotes ORF
T451 22061-22064 SO:0000236 denotes ORF
T452 22080-22090 SP_7 denotes SARS-COV-2
T453 22117-22123 CL:0000084 denotes T-cell
T454 22124-22131 BV_9 denotes epitope
T455 22215-22220 NCBITaxon:10239;GO:0006260 denotes viral
T456 22221-22232 GO:0006260 denotes replication
T457 22414-22422 BV_9 denotes epitopes
T458 22452-22462 SP_7 denotes SARS-COV-2
T459 22658-22665 BV_9 denotes epitope
T460 22724-22734 SP_7 denotes SARS-COV-2
T461 22752-22759 BV_9 denotes epitope
T462 22812-22815 GO:0042611 denotes MHC
T463 22820-22827 SO:0001023 denotes Alleles
T464 22948-22962 BV_26 denotes vaccine design
T465 22971-22981 SP_7 denotes SARS-COV-2
T466 23046-23050 UBERON:0000104 denotes life
T467 23229-23234 SP_6;NCBITaxon:9606 denotes human
T468 23238-23245 NCBITaxon:33208 denotes animals
T82826 32-40 SP_7 denotes COVID-19
T78758 254-262 SP_7 denotes COVID-19
T63716 380-386 GO:0016265 denotes deaths
T22542 505-511 GO:0016265 denotes deaths
T22674 587-598 NCBITaxon:11118 denotes coronavirus
T53244 606-617 NCBITaxon:11118 denotes coronavirus
T65389 633-638 NCBITaxon:10239 denotes virus
T64749 701-714 NCBITaxon:11118 denotes Coronaviridae
T25833 734-745 NCBITaxon:99883 denotes Nidovirales
T46192 782-789 NCBITaxon:9443 denotes Primate
T56897 814-822 NCBITaxon:40674 denotes Mammalia
T29345 844-850 NCBITaxon:9606 denotes humans
T53703 857-869 SP_10 denotes Severe acute
T30654 870-881 SP_10;UBERON:0001004 denotes respiratory
T67466 882-902 SP_10 denotes syndrome coronavirus
T17114 904-912 SP_10 denotes SARS-CoV
T57723 941-952 UBERON:0001004 denotes respiratory
T72781 962-973 NCBITaxon:11118 denotes coronavirus
T59512 975-983 SP_9 denotes MERS-CoV
T46636 1009-1022 NCBITaxon:11118 denotes coronaviruses
T56236 1061-1071 SP_7 denotes SARS-COV-2
T67003 1125-1133 GO:0065007 denotes regulate
T1865 1275-1281 UBERON:0002405 denotes immune
T54457 1282-1289 GO:0006952 denotes defense
T44230 1302-1312 SP_7 denotes SARS-COV-2
T59713 1313-1318 NCBITaxon:10239 denotes virus
T40650 1407-1415 GO:0002250 denotes adaptive
T91359 1416-1422 GO:0002250;UBERON:0002405 denotes immune
T56571 1423-1431 GO:0002250 denotes response
T12847 1435-1441 NCBITaxon:9606 denotes humans
T48897 1486-1493 BV_9 denotes epitope
T2196 1520-1530 SP_7 denotes SARS-COV-2
T43863 1565-1570 NCBITaxon:10239 denotes virus
T31242 1740-1746 CL:0000084;BV_24 denotes T-cell
T19721 1747-1755 BV_24 denotes epitopes
T30536 1847-1857 SP_7 denotes SARS-COV-2
T91455 1865-1872 BV_9 denotes epitope
T8122 1901-1912 GO:0042613 denotes MHC Class I
T8898 1930-1937 SO:0001023 denotes alleles
T44532 1961-1969 BV_9 denotes epitopes
T76841 2186-2200 BV_26 denotes vaccine design
T19283 2302-2308 CL:0000084;BV_24 denotes T-cell
T21435 2309-2317 BV_24 denotes epitopes
T85839 2343-2349 UBERON:0002405;GO:0006955 denotes immune
T63617 2350-2358 GO:0006955 denotes response
T62297 2373-2378 SP_6;NCBITaxon:9606 denotes human
T14783 2461-2469 BV_9 denotes epitopes
T54733 2650-2659 SP_7 denotes SARS-COV2
T21604 2685-2690 NCBITaxon:10239 denotes virus
T11044 2736-2741 SO:0000236 denotes ORF7a
T31869 2774-2787 GO:0016020 denotes transmembrane
T44637 2837-2851 SO:0000984 denotes seven-stranded
T61344 2913-2927 GO:0019814 denotes immunoglobulin
T50216 2942-2950 SP_10 denotes SARS-CoV
T19667 2968-2985 SO:0000984 denotes positive-stranded
T82053 2986-2989 BV_22 denotes RNA
T92179 2990-2995 BV_22;NCBITaxon:10239 denotes virus
T58984 3003-3009 SO:0001026 denotes genome
T51120 3038-3044 SO:0001026 denotes genome
T98752 3070-3089 SO:0000236 denotes open reading frames
T88118 3091-3095 SO:0000236 denotes ORFs
T10517 3193-3200 MOP:0000780 denotes cleaved
T40755 3234-3238 PR:000014815 denotes nsp1
T68644 3239-3244 PR:000000125 denotes nsp16
T26777 3253-3258 NCBITaxon:10239 denotes viral
T37869 3259-3272 GO:0032774 denotes RNA synthesis
T38700 3338-3343 NCBITaxon:10239 denotes viral
T29364 3436-3441 NCBITaxon:10239;GO:0006260 denotes viral
T72969 3442-3453 GO:0006260 denotes replication
T61555 3474-3479 NCBITaxon:10239;GO:0019068 denotes viral
T24991 3480-3488 GO:0019068 denotes assembly
T18162 3575-3580 NCBITaxon:10239 denotes viral
T93025 3593-3601 SP_10 denotes SARS-CoV
T82595 3669-3672 SO:0000236 denotes ORF
T57356 3680-3683 SO:0000236 denotes ORF
T67865 3699-3709 SP_7 denotes SARS-COV-2
T52651 3736-3742 CL:0000084 denotes T-cell
T95082 3743-3750 BV_9 denotes epitope
T58730 3853-3858 NCBITaxon:10239;GO:0006260 denotes viral
T76793 3859-3870 GO:0006260 denotes replication
T56542 3928-3933 NCBITaxon:10239 denotes viral
T43953 4013-4019 CL:0000236;BV_3 denotes B-cell
T43700 4020-4028 BV_3 denotes epitopes
T77293 4115-4123 BV_9 denotes epitopes
T1542 4139-4145 CL:0000084;BV_24 denotes T-cell
T63163 4146-4154 BV_24 denotes epitopes
T91374 4173-4179 CL:0000236;BV_3 denotes B-cell
T20933 4180-4188 BV_3 denotes epitopes
T49245 4212-4220 GO:0042571;BV_1;GO:0016064 denotes antibody
T49269 4221-4229 BV_1;GO:0016064 denotes response
T57549 4253-4259 CL:0000084;BV_24 denotes T-cell
T60968 4260-4268 BV_24 denotes epitopes
T85965 4331-4334 PR:000001004 denotes CD4
T95140 4345-4352 CL:0000084 denotes T-cells
T66089 4418-4426 BV_9 denotes epitopes
T41534 4528-4536 BV_9 denotes epitopes
T1910 4549-4554 GO:0042613 denotes MHC I
T89730 4565-4571 GO:0042613 denotes MHC II
T83872 4638-4646 BV_9 denotes epitopes
T65393 4729-4737 BV_9 denotes epitopes
T93584 4928-4938 SP_7 denotes SARS-COV-2
T45672 5082-5090 GO:0031975 denotes envelope
T37281 5100-5105 PR:000004865 denotes ORF3a
T81405 5128-5142 CHEBI:17089;CHEBI:17089 denotes phosphoprotein
T95541 5144-5149 PR:P16320 denotes ORF7a
T76137 5163-5171 GO:0016020 denotes membrane
T816 5172-5184 CHEBI:17089;CHEBI:17089;BV_11 denotes glycoprotein
T70255 5258-5263 NCBITaxon:10239 denotes virus
T132 5308-5318 SP_7 denotes SARS COV-2
T133 5347-5351 SO:0000704 denotes Gene
T134 5660-5674 BV_11;CHEBI:17089;CHEBI:17089 denotes Glycoprotein 0
T11238 5660-5670 SP_7 denotes Glycoprote
T17957 5697-5703 CL:0000084 denotes T-cell
T73773 5704-5711 BV_9 denotes epitope
T46208 5727-5730 GO:0042611 denotes MHC
T23617 5735-5742 SO:0001023 denotes alleles
T74464 5756-5763 BV_9 denotes epitope
T65672 5933-5942 GO:0042613 denotes MHC Class
T97660 5956-5963 SO:0001023 denotes alleles
T46118 6104-6113 CHEBI:59132;CHEBI:59132 denotes antigenic
T10197 6114-6122 BV_9 denotes epitopes
T49731 6189-6196 NCBITaxon:10239 denotes viruses
T17430 6198-6204 SO:0000417 denotes domain
T86453 6244-6252 BV_9 denotes epitopes
T60418 6257-6260 GO:0042611 denotes MHC
T64831 6265-6272 SO:0001023 denotes alleles
T92728 6277-6285 BV_9 denotes epitopes
T43102 6372-6375 GO:0042611 denotes MHC
T89902 6380-6387 SO:0001023 denotes Allelic
T17100 6514-6522 BV_9 denotes epitopes
T31016 6531-6540 GO:0032991 denotes complexes
T90415 6623-6629 CHEBI:33250;CHEBI:33250 denotes atomic
T34560 6774-6781 GO:0032991 denotes complex
T95805 6848-6854 CHEBI:33250;CHEBI:33250 denotes atomic
T80172 7162-7167 CHEBI:33250;CHEBI:33250 denotes atoms
T29153 7202-7210 BV_9 denotes epitopes
T67892 7451-7459 BV_9 denotes Epitopes
T70441 7664-7671 BV_9 denotes Epitope
T62519 7777-7783 GO:0042613 denotes MHC II
T2795 7788-7793 GO:0042613 denotes MHC I
T57459 7794-7801 SO:0001023 denotes alleles
T34218 7834-7842 BV_9 denotes epitopes
T1145 7969-7977 BV_9 denotes epitopes
T75781 7999-8006 SO:0001023 denotes alleles
T73958 8010-8016 GO:0042613 denotes MHC II
T68972 8021-8026 GO:0042613 denotes MHC I
T71312 8121-8129 BV_9 denotes epitopes
T73347 8194-8200 CL:0000084;BV_24 denotes T-cell
T41262 8201-8209 BV_24 denotes epitopes
T88476 8245-8253 CHEBI:50904;CHEBI:50904 denotes allergen
T96857 8480-8488 BV_9 denotes epitopes
T31217 8518-8525 SO:0001023 denotes alleles
T12321 8564-8575 GO:0042613 denotes MHC Class I
T78137 8584-8596 GO:0042613 denotes MHC Class II
T6049 8601-8608 SO:0001023 denotes alleles
T78656 8616-8624 BV_9 denotes epitopes
T43049 8707-8715 BV_9 denotes epitopes
T95133 8856-8867 GO:0042613 denotes MHC Class I
T87558 8885-8892 SO:0001023 denotes alleles
T183 8941-8950 CHEBI:59132;CHEBI:59132 denotes antigenic
T184 8951-8959 BV_9 denotes epitopes
T185 8964-8967 GO:0042611 denotes MHC
T186 8970-8976 SO:0001023 denotes Allele
T187 9120-9126 SO:0001023 denotes Allele
T188 9680-9689 CHEBI:59132;CHEBI:59132 denotes antigenic
T189 9690-9698 BV_9 denotes epitopes
T190 9703-9709 GO:0042613 denotes MHC II
T191 9710-9716 SO:0001023 denotes Allele
T192 9868-9874 SO:0001023 denotes Allele
T193 10085-10089 PR:000002019 denotes DRB1
T194 10396-10407 GO:0042613 denotes MHC Class I
T195 10425-10432 SO:0001023 denotes alleles
T91279 11339-11346 SO:0001023 denotes alleles
T75452 17086-17093 BV_9 denotes epitope
T5347 19853-19858 PR:000002009 denotes HLA-A
T51475 19866-19871 PR:000002009 denotes HLA-A
T16915 22971-22981 SP_7 denotes SARS-COV-2
T58164 21075-21083 BV_9 denotes epitopes
T54814 21113-21120 BV_9 denotes epitope
T97107 21164-21171 BV_9 denotes Epitope
T64154 21351-21360 NCBITaxon:40674 denotes mammalian
T79204 21361-21374 CL:0000558 denotes reticulocytes
T96895 21435-21443 BV_9 denotes epitopes
T98282 21450-21457 SO:0001023 denotes allelic
T3100 21458-21467 GO:0032991 denotes complexes
T2099 21544-21551 BV_9 denotes epitope
T52010 21628-21636 BV_9 denotes epitopes
T93615 21657-21667 CHEBI:50904;CHEBI:50904 denotes allergenic
T44148 21750-21758 SP_7 denotes COVID-19
T48419 21867-21875 SP_10 denotes SARS-COV
T15410 21885-21895 SO:0000853 denotes homologous
T45966 21916-21926 SP_7 denotes SARS-COV-2
T91878 21968-21976 BV_9 denotes epitopes
T64466 22050-22053 SO:0000236 denotes ORF
T31987 22061-22064 SO:0000236 denotes ORF
T22365 22080-22090 SP_7 denotes SARS-COV-2
T96116 22117-22123 CL:0000084 denotes T-cell
T26337 22124-22131 BV_9 denotes epitope
T95242 22215-22220 NCBITaxon:10239;GO:0006260 denotes viral
T76165 22221-22232 GO:0006260 denotes replication
T33956 22414-22422 BV_9 denotes epitopes
T81496 22452-22462 SP_7 denotes SARS-COV-2
T18374 22658-22665 BV_9 denotes epitope
T95440 22724-22734 SP_7 denotes SARS-COV-2
T19239 22752-22759 BV_9 denotes epitope
T52484 22812-22815 GO:0042611 denotes MHC
T40017 22820-22827 SO:0001023 denotes Alleles
T51478 22948-22962 BV_26 denotes vaccine design
T11973 22971-22981 SP_7 denotes SARS-COV-2
T50614 23046-23050 UBERON:0000104 denotes life
T18056 23229-23234 SP_6;NCBITaxon:9606 denotes human
T32888 23238-23245 NCBITaxon:33208 denotes animals

2_test

Id Subject Object Predicate Lexical cue
32352026-31986257-47638057 91-93 31986257 denotes 37
32352026-12690091-47638058 915-917 12690091 denotes 11
32352026-12690092-47638059 918-920 12690092 denotes 21
32352026-12892955-47638060 921-923 12892955 denotes 22
32352026-23678167-47638061 986-987 23678167 denotes 7
32352026-23075143-47638062 988-990 23075143 denotes 40
32352026-32081636-47638063 1146-1148 32081636 denotes 24
32352026-19261195-47638064 3603-3605 19261195 denotes 44
32352026-30822457-47638065 3883-3885 30822457 denotes 41
32352026-18367524-47638066 4008-4010 18367524 denotes 43
32352026-24167156-47638067 5047-5048 24167156 denotes 8
32352026-16339739-47638068 5265-5267 16339739 denotes 38
32352026-22610854-47638069 5775-5777 22610854 denotes 20
32352026-22581768-47638070 6364-6366 22581768 denotes 34
32352026-10592235-47638071 6464-6465 10592235 denotes 4
32352026-15980490-47638072 6714-6716 15980490 denotes 32
32352026-22437851-47638073 7300-7302 22437851 denotes 17
32352026-20057044-47638074 7576-7577 20057044 denotes 6
32352026-12824380-47638075 8028-8030 12824380 denotes 15
32352026-12862314-47638076 18412-18414 12862314 denotes 27
32352026-23202522-47638077 19052-19054 23202522 denotes 30
32352026-32022276-47638078 19485-19486 32022276 denotes 3
32352026-19526193-47638079 20140-20142 19526193 denotes 12
32352026-30822457-47638080 22234-22236 30822457 denotes 41
T68539 91-93 31986257 denotes 37
T82365 915-917 12690091 denotes 11
T50556 918-920 12690092 denotes 21
T16647 921-923 12892955 denotes 22
T70354 986-987 23678167 denotes 7
T85430 988-990 23075143 denotes 40
T7572 1146-1148 32081636 denotes 24
T21593 3603-3605 19261195 denotes 44
T10377 3883-3885 30822457 denotes 41
T68358 4008-4010 18367524 denotes 43
T65408 5047-5048 24167156 denotes 8
T96450 5265-5267 16339739 denotes 38
T69671 5775-5777 22610854 denotes 20
T22954 6364-6366 22581768 denotes 34
T73323 6464-6465 10592235 denotes 4
T91261 6714-6716 15980490 denotes 32
T52774 7300-7302 22437851 denotes 17
T64571 7576-7577 20057044 denotes 6
T95730 8028-8030 12824380 denotes 15
T19277 18412-18414 12862314 denotes 27
T73448 19052-19054 23202522 denotes 30
T8947 19485-19486 32022276 denotes 3
T68988 20140-20142 19526193 denotes 12
T54895 22234-22236 30822457 denotes 41