PMC:7189872 / 12500-13726
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
214 | 764-767 | Gene | denotes | ACE | Gene:1636 |
215 | 788-793 | Gene | denotes | HLA-A | Gene:3105 |
216 | 837-842 | Gene | denotes | HLA-A | Gene:3105 |
217 | 886-891 | Gene | denotes | HLA-A | Gene:3105 |
218 | 934-939 | Gene | denotes | HLA-A | Gene:3105 |
219 | 983-988 | Gene | denotes | HLA-A | Gene:3105 |
220 | 1032-1037 | Gene | denotes | HLA-A | Gene:3105 |
221 | 711-714 | Gene | denotes | HLA | Gene:3123 |
223 | 604-607 | Gene | denotes | Ace | Gene:1636 |
242 | 185-188 | Gene | denotes | ACE | Gene:1636 |
243 | 247-253 | Gene | denotes | ORF-7A | Gene:43740573 |
244 | 299-304 | Gene | denotes | HLA-A | Gene:3105 |
245 | 312-317 | Gene | denotes | HLA-A | Gene:3105 |
246 | 368-374 | Gene | denotes | ORF-3a | Gene:43740569 |
247 | 465-471 | Gene | denotes | ORF-7a | Gene:43740573 |
248 | 518-526 | Gene | denotes | HLA-DRB1 | Gene:3123 |
249 | 534-542 | Gene | denotes | HLA-DRB1 | Gene:3123 |
250 | 411-416 | Gene | denotes | HLA-A | Gene:3105 |
251 | 505-508 | Gene | denotes | HLA | Gene:3123 |
252 | 399-402 | Gene | denotes | HLA | Gene:3123 |
253 | 286-289 | Gene | denotes | HLA | Gene:3123 |
254 | 140-143 | Gene | denotes | HLA | Gene:3123 |
255 | 557-560 | Gene | denotes | MHC | Gene:3107 |
256 | 427-430 | Gene | denotes | MHC | Gene:3107 |
257 | 328-331 | Gene | denotes | MHC | Gene:3107 |
258 | 64-67 | Gene | denotes | MHC | Gene:3107 |
259 | 76-79 | Gene | denotes | HLA | Gene:3123 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T110 | 64-67 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
T111 | 76-79 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T112 | 127-130 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
T113 | 140-143 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T114 | 254-261 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T115 | 286-289 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T116 | 299-302 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T117 | 312-315 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T118 | 328-331 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
T119 | 375-382 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T120 | 399-402 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T121 | 411-414 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T122 | 427-430 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
T123 | 472-479 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T124 | 505-508 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T125 | 518-521 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T126 | 534-537 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T127 | 557-560 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
T128 | 711-714 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T129 | 788-791 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T130 | 837-840 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T131 | 886-889 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T132 | 934-937 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T133 | 983-986 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T134 | 1032-1035 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T92 | 157-158 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T93 | 303-307 | http://purl.obolibrary.org/obo/CLO_0001553 | denotes | A*11 |
T94 | 316-317 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T95 | 415-416 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T96 | 792-793 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T97 | 841-842 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T98 | 890-894 | http://purl.obolibrary.org/obo/CLO_0001553 | denotes | A*11 |
T99 | 938-942 | http://purl.obolibrary.org/obo/CLO_0001553 | denotes | A*11 |
T100 | 987-988 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T101 | 1036-1037 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T88 | 103-110 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T89 | 137-139 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
T90 | 254-261 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T91 | 375-382 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T92 | 472-479 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T93 | 567-569 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T111 | 0-217 | Sentence | denotes | It was found that FTIGTVTLK, ITLCFTLKR epitopes interacted with MHC class I HLA Alleles, and VYQLRARSV epitope interacted with MHC Class II HLA alleles with a perfect binding score and ACE values as shown in Table 5 . |
T112 | 218-439 | Sentence | denotes | The ITLCFTLKR Epitope of the ORF-7A protein exhibits binding with 2 HLA alleles (HLA-A*11:01, HLA-A*68:01) of MHC Class I, while FTIGTVTLK Epitope of ORF-3a protein interact with 1 HLA Allele (HLA-A*68:01) of MHC Class I. |
T113 | 440-577 | Sentence | denotes | The VYQLRARSV Epitope of ORF-7a protein interacts clearly with 2 HLA Alleles (HLA-DRB1*01:01, HLA-DRB1*07:01) of the MHC Class II domain. |
T114 | 578-702 | Sentence | denotes | Table 5 Binding Energies, Ace Values for Docked Complexes based on DINC Server and PatchDock Analysis for Putative Epitopes. |
T115 | 703-777 | Sentence | denotes | Epitope HLA Allele Binding score (kcal/mol) Patch dock score ACE Selection |
T116 | 778-826 | Sentence | denotes | FTIGTVTLK HLA-A*68:01 −8.80 8066 178.91 Selected |
T117 | 827-875 | Sentence | denotes | RLWLCWKCR HLA-A*31:01 −4.80 8916 117.53 Rejected |
T118 | 876-923 | Sentence | denotes | GTITVEELK HLA-A*11:01 −3.80 8040 78.78 Rejected |
T119 | 924-972 | Sentence | denotes | ITLCFTLKR HLA-A*11:01 −3.70 8206 −25.88 Selected |
T120 | 973-1021 | Sentence | denotes | ITLCFTLKR HLA-A*68:01 −7.60 8136 184.55 Selected |
T121 | 1022-1071 | Sentence | denotes | VFITLCFTL HLA-A*23:01 −4.40 7706 −134.91 Rejected |
T122 | 1072-1123 | Sentence | denotes | WLLWPVTLA HLADRB1*04:01 −8.60 9432 −150.96 Rejected |
T123 | 1124-1175 | Sentence | denotes | VYQLRARSV HLADRB1*01:01 −6.20 6874 −168.74 Selected |
T124 | 1176-1226 | Sentence | denotes | VYQLRARSV HLADRB1*07:01 −6.20 6842 262.74 Selected |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T220 | 39-47 | BV_9 | denotes | epitopes |
T221 | 64-75 | GO:0042613 | denotes | MHC class I |
T222 | 80-87 | SO:0001023 | denotes | Alleles |
T223 | 103-110 | BV_9 | denotes | epitope |
T224 | 127-143 | GO:0042613 | denotes | MHC Class II HLA |
T225 | 144-151 | SO:0001023 | denotes | alleles |
T226 | 232-239 | BV_9 | denotes | Epitope |
T227 | 247-250 | SO:0000236 | denotes | ORF |
T228 | 290-297 | SO:0001023 | denotes | alleles |
T229 | 299-304 | PR:000002009 | denotes | HLA-A |
T230 | 312-317 | PR:000002009 | denotes | HLA-A |
T231 | 328-337 | GO:0042613 | denotes | MHC Class |
T232 | 357-364 | BV_9 | denotes | Epitope |
T233 | 368-371 | SO:0000236 | denotes | ORF |
T234 | 403-409 | SO:0001023 | denotes | Allele |
T235 | 411-416 | PR:000002009 | denotes | HLA-A |
T236 | 427-438 | GO:0042613 | denotes | MHC Class I |
T237 | 454-461 | BV_9 | denotes | Epitope |
T238 | 465-468 | SO:0000236 | denotes | ORF |
T239 | 509-516 | SO:0001023 | denotes | Alleles |
T240 | 518-526 | PR:000002019 | denotes | HLA-DRB1 |
T241 | 534-542 | PR:000002019 | denotes | HLA-DRB1 |
T242 | 557-569 | GO:0042613 | denotes | MHC Class II |
T243 | 570-576 | SO:0000417 | denotes | domain |
T247 | 626-635 | GO:0032991 | denotes | Complexes |
T248 | 693-701 | BV_9 | denotes | Epitopes |
T91279 | 144-151 | SO:0001023 | denotes | alleles |