PMC:7189872 / 11770-12466 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"182","span":{"begin":40,"end":43},"obj":"Gene"},{"id":"183","span":{"begin":44,"end":47},"obj":"Gene"},{"id":"191","span":{"begin":443,"end":448},"obj":"Gene"},{"id":"192","span":{"begin":513,"end":518},"obj":"Gene"},{"id":"193","span":{"begin":583,"end":591},"obj":"Gene"},{"id":"194","span":{"begin":621,"end":629},"obj":"Gene"},{"id":"195","span":{"begin":659,"end":667},"obj":"Gene"},{"id":"196","span":{"begin":548,"end":553},"obj":"Gene"},{"id":"197","span":{"begin":478,"end":483},"obj":"Gene"},{"id":"200","span":{"begin":309,"end":312},"obj":"Gene"},{"id":"201","span":{"begin":313,"end":316},"obj":"Gene"},{"id":"204","span":{"begin":131,"end":134},"obj":"Gene"},{"id":"205","span":{"begin":102,"end":105},"obj":"Gene"}],"attributes":[{"id":"A182","pred":"tao:has_database_id","subj":"182","obj":"Gene:3107"},{"id":"A183","pred":"tao:has_database_id","subj":"183","obj":"Gene:3123"},{"id":"A191","pred":"tao:has_database_id","subj":"191","obj":"Gene:3105"},{"id":"A192","pred":"tao:has_database_id","subj":"192","obj":"Gene:3105"},{"id":"A193","pred":"tao:has_database_id","subj":"193","obj":"Gene:3123"},{"id":"A194","pred":"tao:has_database_id","subj":"194","obj":"Gene:3123"},{"id":"A195","pred":"tao:has_database_id","subj":"195","obj":"Gene:3123"},{"id":"A196","pred":"tao:has_database_id","subj":"196","obj":"Gene:3105"},{"id":"A197","pred":"tao:has_database_id","subj":"197","obj":"Gene:3105"},{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"Gene:3107"},{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"Gene:3123"},{"id":"A204","pred":"tao:has_database_id","subj":"204","obj":"Gene:3123"},{"id":"A205","pred":"tao:has_database_id","subj":"205","obj":"Gene:5047"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"3.2 Structural findings of epitope and MHC HLA-Alleles\nEpitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database. In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.\nTable 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.\nAllele Name Template structure (PDB-ID) Crystal structure/Model\nHLA-A*11:01 2HN7 CRYSTAL STRUCTURE\nHLA-A*23:01 3I6L CRYSTAL STRUCTURE\nHLA-A*31:01 3RL1 CRYSTAL STRUCTURE\nHLA-A*68:01 6PBH CRYSTAL STRUCTURE\nHLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE\nHLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE\nHLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T98","span":{"begin":40,"end":43},"obj":"Body_part"},{"id":"T99","span":{"begin":44,"end":47},"obj":"Body_part"},{"id":"T100","span":{"begin":131,"end":134},"obj":"Body_part"},{"id":"T101","span":{"begin":309,"end":312},"obj":"Body_part"},{"id":"T102","span":{"begin":313,"end":316},"obj":"Body_part"},{"id":"T103","span":{"begin":443,"end":446},"obj":"Body_part"},{"id":"T104","span":{"begin":478,"end":481},"obj":"Body_part"},{"id":"T105","span":{"begin":513,"end":516},"obj":"Body_part"},{"id":"T106","span":{"begin":548,"end":551},"obj":"Body_part"},{"id":"T107","span":{"begin":583,"end":586},"obj":"Body_part"},{"id":"T108","span":{"begin":621,"end":624},"obj":"Body_part"},{"id":"T109","span":{"begin":659,"end":662},"obj":"Body_part"}],"attributes":[{"id":"A98","pred":"fma_id","subj":"T98","obj":"http://purl.org/sig/ont/fma/fma84079"},{"id":"A99","pred":"fma_id","subj":"T99","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A100","pred":"fma_id","subj":"T100","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A101","pred":"fma_id","subj":"T101","obj":"http://purl.org/sig/ont/fma/fma84079"},{"id":"A102","pred":"fma_id","subj":"T102","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A103","pred":"fma_id","subj":"T103","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A104","pred":"fma_id","subj":"T104","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A105","pred":"fma_id","subj":"T105","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A106","pred":"fma_id","subj":"T106","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A107","pred":"fma_id","subj":"T107","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A108","pred":"fma_id","subj":"T108","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A109","pred":"fma_id","subj":"T109","obj":"http://purl.org/sig/ont/fma/fma84795"}],"text":"3.2 Structural findings of epitope and MHC HLA-Alleles\nEpitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database. In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.\nTable 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.\nAllele Name Template structure (PDB-ID) Crystal structure/Model\nHLA-A*11:01 2HN7 CRYSTAL STRUCTURE\nHLA-A*23:01 3I6L CRYSTAL STRUCTURE\nHLA-A*31:01 3RL1 CRYSTAL STRUCTURE\nHLA-A*68:01 6PBH CRYSTAL STRUCTURE\nHLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE\nHLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE\nHLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T88","span":{"begin":447,"end":451},"obj":"http://purl.obolibrary.org/obo/CLO_0001553"},{"id":"T89","span":{"begin":482,"end":483},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T90","span":{"begin":517,"end":518},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T91","span":{"begin":552,"end":553},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"3.2 Structural findings of epitope and MHC HLA-Alleles\nEpitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database. In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.\nTable 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.\nAllele Name Template structure (PDB-ID) Crystal structure/Model\nHLA-A*11:01 2HN7 CRYSTAL STRUCTURE\nHLA-A*23:01 3I6L CRYSTAL STRUCTURE\nHLA-A*31:01 3RL1 CRYSTAL STRUCTURE\nHLA-A*68:01 6PBH CRYSTAL STRUCTURE\nHLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE\nHLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE\nHLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T83","span":{"begin":28,"end":35},"obj":"Chemical"},{"id":"T84","span":{"begin":102,"end":105},"obj":"Chemical"},{"id":"T86","span":{"begin":375,"end":377},"obj":"Chemical"},{"id":"T87","span":{"begin":415,"end":417},"obj":"Chemical"}],"attributes":[{"id":"A83","pred":"chebi_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/CHEBI_53000"},{"id":"A84","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_18021"},{"id":"A85","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_44897"},{"id":"A86","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"},{"id":"A87","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"}],"text":"3.2 Structural findings of epitope and MHC HLA-Alleles\nEpitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database. In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.\nTable 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.\nAllele Name Template structure (PDB-ID) Crystal structure/Model\nHLA-A*11:01 2HN7 CRYSTAL STRUCTURE\nHLA-A*23:01 3I6L CRYSTAL STRUCTURE\nHLA-A*31:01 3RL1 CRYSTAL STRUCTURE\nHLA-A*68:01 6PBH CRYSTAL STRUCTURE\nHLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE\nHLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE\nHLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE"}

{"project":"LitCovid-sentences","denotations":[{"id":"T98","span":{"begin":0,"end":55},"obj":"Sentence"},{"id":"T99","span":{"begin":56,"end":197},"obj":"Sentence"},{"id":"T100","span":{"begin":198,"end":289},"obj":"Sentence"},{"id":"T101","span":{"begin":290,"end":378},"obj":"Sentence"},{"id":"T102","span":{"begin":379,"end":442},"obj":"Sentence"},{"id":"T103","span":{"begin":443,"end":477},"obj":"Sentence"},{"id":"T104","span":{"begin":478,"end":512},"obj":"Sentence"},{"id":"T105","span":{"begin":513,"end":547},"obj":"Sentence"},{"id":"T106","span":{"begin":548,"end":582},"obj":"Sentence"},{"id":"T107","span":{"begin":583,"end":620},"obj":"Sentence"},{"id":"T108","span":{"begin":621,"end":658},"obj":"Sentence"},{"id":"T109","span":{"begin":659,"end":696},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"3.2 Structural findings of epitope and MHC HLA-Alleles\nEpitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database. In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.\nTable 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.\nAllele Name Template structure (PDB-ID) Crystal structure/Model\nHLA-A*11:01 2HN7 CRYSTAL STRUCTURE\nHLA-A*23:01 3I6L CRYSTAL STRUCTURE\nHLA-A*31:01 3RL1 CRYSTAL STRUCTURE\nHLA-A*68:01 6PBH CRYSTAL STRUCTURE\nHLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE\nHLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE\nHLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T208","span":{"begin":28,"end":35},"obj":"BV_9"},{"id":"T209","span":{"begin":40,"end":43},"obj":"GO:0042611"},{"id":"T210","span":{"begin":48,"end":55},"obj":"SO:0001023"},{"id":"T211","span":{"begin":56,"end":63},"obj":"BV_9"},{"id":"T212","span":{"begin":135,"end":141},"obj":"SO:0001023"},{"id":"T218","span":{"begin":309,"end":312},"obj":"GO:0042611"},{"id":"T219","span":{"begin":317,"end":324},"obj":"SO:0001023"}],"text":"3.2 Structural findings of epitope and MHC HLA-Alleles\nEpitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database. In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.\nTable 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.\nAllele Name Template structure (PDB-ID) Crystal structure/Model\nHLA-A*11:01 2HN7 CRYSTAL STRUCTURE\nHLA-A*23:01 3I6L CRYSTAL STRUCTURE\nHLA-A*31:01 3RL1 CRYSTAL STRUCTURE\nHLA-A*68:01 6PBH CRYSTAL STRUCTURE\nHLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE\nHLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE\nHLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE"}