> top > docs > PMC:7189872 > annotations

PMC:7189872 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 37-47 Species denotes SARS-COV-2 Tax:2697049
8 691-694 Gene denotes HLA Gene:3123
9 118-128 Species denotes SARS-COV-2 Tax:2697049
10 647-657 Species denotes SARS-COV-2 Tax:2697049
11 549-552 Gene denotes HLA Gene:3123
12 138-146 Disease denotes COVID-19 MESH:C000657245
13 379-385 Disease denotes deaths MESH:D003643
15 4898-4906 Species denotes SARS-CoV Tax:694009
45 4026-4031 Gene denotes ORF3a Gene:43740569
46 4041-4046 Gene denotes ORF7a Gene:43740573
47 4539-4543 Gene denotes nsp1 Gene:10045
48 3231-3234 Gene denotes HLA Gene:3123
49 1892-1903 Species denotes coronavirus Tax:11118
50 1911-1922 Species denotes coronavirus Tax:11118
51 2006-2019 Species denotes Coronaviridae Tax:11118
52 2119-2127 Species denotes Mammalia Tax:9606
53 2149-2155 Species denotes humans Tax:9606
54 2162-2207 Species denotes Severe acute respiratory syndrome coronavirus Tax:694009
55 2209-2217 Species denotes SARS-CoV Tax:694009
56 2267-2278 Species denotes coronavirus Tax:11118
57 2280-2288 Species denotes MERS-CoV Tax:1335626
58 2312-2327 Species denotes β-coronaviruses Tax:694002
59 2366-2376 Species denotes SARS-COV-2 Tax:2697049
60 2607-2617 Species denotes SARS-COV-2 Tax:2697049
61 2740-2746 Species denotes humans Tax:9606
62 2825-2835 Species denotes SARS-COV-2 Tax:2697049
63 3152-3162 Species denotes SARS-COV-2 Tax:2697049
64 3678-3683 Species denotes human Tax:9606
65 3955-3964 Species denotes SARS-COV2 Tax:2697049
66 4247-4255 Species denotes SARS-CoV Tax:694009
67 3206-3209 Gene denotes MHC Gene:3107
68 1337-1345 Disease denotes COVID-19 MESH:C000657245
69 1559-1567 Disease denotes COVID-19 MESH:C000657245
70 1685-1691 Disease denotes deaths MESH:D003643
71 1810-1816 Disease denotes deaths MESH:D003643
72 3355-3363 Disease denotes Toxicity MESH:D064420
73 4396-4400 Disease denotes ORFs MESH:D004474
81 4974-4980 Gene denotes ORF-3a Gene:43740569
82 5636-5639 Gene denotes CD4 Gene:920
83 5645-5648 Gene denotes CD8 Gene:925
84 5797-5802 Gene denotes SPIKE Gene:43740568
85 5854-5865 Gene denotes MHC I and 3
86 4985-4991 Gene denotes ORF-7a Gene:43740573
87 5004-5014 Species denotes SARS-COV-2 Tax:2697049
91 6813-6818 Gene denotes ORF3a Gene:43740569
92 6657-6661 Gene denotes Bank Gene:55024
93 6913-6918 Gene denotes ORF7a Gene:43740573
95 6613-6623 Species denotes SARS COV-2 Tax:2697049
100 6387-6403 Gene denotes envelope protein Gene:64006
101 6405-6410 Gene denotes ORF3a Gene:43740569
102 6449-6454 Gene denotes ORF7a Gene:43740573
103 6233-6243 Species denotes SARS-COV-2 Tax:2697049
106 7032-7035 Gene denotes MHC Gene:3107
107 7036-7039 Gene denotes HLA Gene:3123
111 7238-7250 Gene denotes MHC Class II
112 7257-7260 Gene denotes HLA Gene:3123
113 7438-7445 Chemical denotes VaxiJen
116 7562-7565 Gene denotes MHC Gene:3107
117 7566-7569 Gene denotes HLA Gene:3123
121 7642-7645 Gene denotes PEP Gene:5047
122 7677-7680 Gene denotes MHC Gene:3107
123 7681-7684 Gene denotes HLA Gene:3123
126 7832-7835 Gene denotes HLA Gene:3123
127 7951-7954 Gene denotes ACE Gene:1636
131 8326-8333 Species denotes C-alpha Tax:342041
132 8460-8466 Chemical denotes carbon MESH:D002244
133 8289-8306 Disease denotes Coarse grained MD MESH:D009436
135 8616-8624 Disease denotes Toxicity MESH:D064420
137 8736-8744 Disease denotes toxicity MESH:D064420
140 9300-9303 Gene denotes HLA Gene:3123
141 9093-9096 Gene denotes MHC Gene:3107
149 10710-10715 Gene denotes HLA-A Gene:3105
150 10772-10777 Gene denotes HLA-A Gene:3105
151 10877-10882 Gene denotes HLA-A Gene:3105
152 10824-10829 Gene denotes HLA-A Gene:3105
153 10609-10614 Gene denotes HLA-A Gene:3105
154 10560-10565 Gene denotes HLA-A Gene:3105
155 10470-10473 Gene denotes MHC Gene:3107
157 10421-10424 Gene denotes HLA Gene:3123
162 11386-11394 Gene denotes HLA-DRB1 Gene:3123
163 11453-11461 Gene denotes HLA-DRB1 Gene:3123
164 11509-11517 Gene denotes HLA-DRB1 Gene:3123
165 11218-11221 Gene denotes MHC Gene:3107
167 11169-11172 Gene denotes HLA Gene:3123
170 11726-11729 Gene denotes HLA Gene:3123
171 11701-11704 Gene denotes MHC Gene:3107
176 10186-10189 Gene denotes HLA Gene:3123
177 9902-9905 Gene denotes HLA Gene:3123
178 9819-9822 Gene denotes HLA Gene:3123
179 10161-10164 Gene denotes MHC Gene:3107
182 11810-11813 Gene denotes MHC Gene:3107
183 11814-11817 Gene denotes HLA Gene:3123
191 12213-12218 Gene denotes HLA-A Gene:3105
192 12283-12288 Gene denotes HLA-A Gene:3105
193 12353-12361 Gene denotes HLA-DRB1 Gene:3123
194 12391-12399 Gene denotes HLA-DRB1 Gene:3123
195 12429-12437 Gene denotes HLA-DRB1 Gene:3123
196 12318-12323 Gene denotes HLA-A Gene:3105
197 12248-12253 Gene denotes HLA-A Gene:3105
200 12079-12082 Gene denotes MHC Gene:3107
201 12083-12086 Gene denotes HLA Gene:3123
204 11901-11904 Gene denotes HLA Gene:3123
205 11872-11875 Gene denotes PEP Gene:5047
214 13264-13267 Gene denotes ACE Gene:1636
215 13288-13293 Gene denotes HLA-A Gene:3105
216 13337-13342 Gene denotes HLA-A Gene:3105
217 13386-13391 Gene denotes HLA-A Gene:3105
218 13434-13439 Gene denotes HLA-A Gene:3105
219 13483-13488 Gene denotes HLA-A Gene:3105
220 13532-13537 Gene denotes HLA-A Gene:3105
221 13211-13214 Gene denotes HLA Gene:3123
223 13104-13107 Gene denotes Ace Gene:1636
242 12685-12688 Gene denotes ACE Gene:1636
243 12747-12753 Gene denotes ORF-7A Gene:43740573
244 12799-12804 Gene denotes HLA-A Gene:3105
245 12812-12817 Gene denotes HLA-A Gene:3105
246 12868-12874 Gene denotes ORF-3a Gene:43740569
247 12965-12971 Gene denotes ORF-7a Gene:43740573
248 13018-13026 Gene denotes HLA-DRB1 Gene:3123
249 13034-13042 Gene denotes HLA-DRB1 Gene:3123
250 12911-12916 Gene denotes HLA-A Gene:3105
251 13005-13008 Gene denotes HLA Gene:3123
252 12899-12902 Gene denotes HLA Gene:3123
253 12786-12789 Gene denotes HLA Gene:3123
254 12640-12643 Gene denotes HLA Gene:3123
255 13057-13060 Gene denotes MHC Gene:3107
256 12927-12930 Gene denotes MHC Gene:3107
257 12828-12831 Gene denotes MHC Gene:3107
258 12564-12567 Gene denotes MHC Gene:3107
259 12576-12579 Gene denotes HLA Gene:3123
267 14236-14241 Gene denotes HLA-A Gene:3105
268 14252-14257 Gene denotes MHC I
269 14258-14261 Gene denotes HLA Gene:3123
270 14276-14285 Chemical denotes Threonine MESH:D013912
271 14352-14360 Chemical denotes hydrogen MESH:D006859
272 14458-14471 Chemical denotes Glutamic acid MESH:D018698
273 14476-14482 Chemical denotes lysine MESH:D008239
280 14668-14673 Gene denotes HLA-A Gene:3105
281 14684-14689 Gene denotes MHC I
282 14690-14693 Gene denotes HLA Gene:3123
283 14708-14717 Chemical denotes Threonine MESH:D013912
284 14754-14762 Chemical denotes cysteine MESH:D003545
285 14817-14825 Chemical denotes hydrogen MESH:D006859
293 15034-15042 Gene denotes HLA-DRB1 Gene:3123
294 15059-15062 Gene denotes HLA Gene:3123
295 15077-15085 Chemical denotes Tyrosine MESH:D014443
296 15094-15103 Chemical denotes Glutamine MESH:D005973
297 15124-15130 Chemical denotes Serine MESH:D012694
298 15180-15188 Chemical denotes hydrogen MESH:D006859
299 15276-15287 Chemical denotes 7tharginine
301 15456-15459 Gene denotes HLA Gene:3123
306 13844-13847 Gene denotes HLA Gene:3123
307 13825-13828 Gene denotes MHC Gene:3107
308 14152-14155 Gene denotes HLA Gene:3123
309 13860-13868 Chemical denotes hydrogen MESH:D006859
314 16462-16470 Gene denotes HLA-DRB1 Gene:3123
315 16624-16632 Gene denotes HLA-DRB1 Gene:3123
316 16239-16244 Gene denotes HLA-A Gene:3105
317 16406-16411 Gene denotes HLA-A Gene:3105
321 15938-15943 Gene denotes HLA-A Gene:3105
322 16027-16035 Gene denotes HLA-DRB1 Gene:3123
323 15629-15632 Gene denotes HLA Gene:3123
325 16661-16669 Disease denotes Toxicity MESH:D064420
327 16959-16999 Disease denotes Hydrophilicity Molecular weight Toxicity MESH:C537060
334 18116-18121 Gene denotes HLA-A Gene:3105
335 18234-18242 Gene denotes HLA-DRB1 Gene:3123
336 18276-18284 Gene denotes HLA-DRB1 Gene:3123
337 18194-18199 Gene denotes HLA-A Gene:3105
338 18155-18160 Gene denotes HLA-A Gene:3105
339 18002-18005 Gene denotes HLA Gene:3123
341 17956-17959 Gene denotes HLA Gene:3123
344 17768-17771 Gene denotes MHC Gene:3107
345 17758-17761 Gene denotes MHC Gene:3107
347 19279-19288 Species denotes Mammalian Tax:9606
350 19124-19133 Species denotes mammalian Tax:9606
351 19004-19018 Disease denotes hydropathicity
364 20258-20262 Gene denotes ViPR Gene:7433
365 20961-20966 Gene denotes MHC I
366 19472-19482 Species denotes SARS-COV-2 Tax:2697049
367 19635-19643 Species denotes SARS-COV Tax:694009
368 19962-19970 Species denotes MERS-COV Tax:1335626
369 20176-20181 Species denotes COV-2 Tax:2697049
370 20401-20411 Species denotes SARS-COV-2 Tax:2697049
371 20533-20543 Species denotes SARS-COV-2 Tax:2697049
372 20706-20716 Species denotes SARS-COV-2 Tax:2697049
373 20897-20907 Species denotes SARS-COV-2 Tax:2697049
374 20997-21000 Gene denotes HLA Gene:3123
375 19910-19918 Disease denotes toxicity MESH:D064420
399 21050-21055 Gene denotes HLA-B Gene:3106
400 21158-21163 Gene denotes HLA-A Gene:3105
401 21171-21176 Gene denotes HLA-A Gene:3105
402 21184-21192 Gene denotes HLA-DRB1 Gene:3123
403 21203-21211 Gene denotes HLA-DRB1 Gene:3123
404 21219-21222 Gene denotes CD4 Gene:920
405 21228-21231 Gene denotes CD8 Gene:925
406 21438-21443 Gene denotes IFN-γ Gene:3458
407 21925-21930 Gene denotes Spike Gene:43740568
408 21989-21992 Gene denotes ACE Gene:1636
409 21994-22023 Gene denotes Angiotensin Converting Enzyme Gene:1636
410 22224-22227 Gene denotes MHC Gene:3107
411 21038-21043 Gene denotes HLA-B Gene:3106
412 21029-21037 Species denotes SARS-CoV Tax:694009
413 21347-21355 Species denotes SARS-CoV Tax:694009
414 21942-21952 Species denotes SARS-COV-2 Tax:2697049
415 22039-22044 Species denotes Human Tax:9606
416 22296-22306 Species denotes SARS-COV-2 Tax:2697049
417 22656-22665 Species denotes mammalian Tax:9606
418 21124-21127 Gene denotes MHC Gene:3107
419 21062-21065 Gene denotes HLA Gene:3123
420 21905-21912 Chemical denotes CR-3022
421 22537-22551 Disease denotes hydropathicity
432 23355-23361 Gene denotes ORF-3a Gene:43740569
433 23119-23124 Gene denotes spike Gene:43740568
434 23366-23372 Gene denotes ORF-7a Gene:43740573
435 23172-23180 Species denotes SARS-COV Tax:694009
436 23221-23231 Species denotes SARS-COV-2 Tax:2697049
437 23385-23395 Species denotes SARS-COV-2 Tax:2697049
438 23757-23767 Species denotes SARS-COV-2 Tax:2697049
439 22751-22754 Gene denotes HLA Gene:3123
440 23055-23063 Disease denotes COVID-19 MESH:C000657245
441 23596-23599 Disease denotes HMM
446 24117-24120 Gene denotes MHC Gene:3107
447 24121-24124 Gene denotes HLA Gene:3123
448 24029-24039 Species denotes SARS-COV-2 Tax:2697049
449 24276-24286 Species denotes SARS-COV-2 Tax:2697049
451 24534-24539 Species denotes human Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 549-552 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T2 561-569 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T3 691-694 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T4 1009-1013 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T5 1929-1932 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 3047-3051 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T7 3099-3106 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T8 3206-3209 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T9 3231-3234 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T10 3609-3613 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T11 4061-4071 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T12 4079-4100 Body_part denotes transmembrane protein http://purl.org/sig/ont/fma/fma67858
T13 4218-4232 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871
T14 4291-4294 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 4308-4314 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T16 4343-4349 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T17 4417-4425 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T18 4529-4537 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T19 4564-4567 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T20 4595-4603 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T21 4693-4701 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T22 4856-4862 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T23 4886-4894 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T24 4958-4966 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T25 5043-5047 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T26 5126-5134 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T27 5207-5215 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T28 5320-5324 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T29 5446-5450 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T30 5480-5484 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T31 5517-5525 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T32 5560-5564 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 5652-5657 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 5783-5790 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T35 5803-5810 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 5854-5857 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T37 5870-5873 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T38 5909-5917 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T39 6108-6115 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T40 6158-6165 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 6369-6377 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T42 6396-6403 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T43 6411-6418 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T44 6455-6462 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T45 6477-6489 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T46 6591-6599 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T47 6644-6651 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T48 6652-6656 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T49 6676-6683 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T50 6776-6783 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T51 6819-6826 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T52 6919-6926 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T53 6965-6977 Body_part denotes Glycoprotein http://purl.org/sig/ont/fma/fma62925
T54 7004-7008 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T55 7032-7035 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T56 7036-7039 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T57 7238-7241 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T58 7257-7260 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T59 7336-7351 Body_part denotes neural networks http://purl.org/sig/ont/fma/fma74616
T60 7562-7565 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T61 7566-7569 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T62 7677-7680 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T63 7681-7684 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T64 7832-7835 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T65 8181-8192 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T66 8427-8429 Body_part denotes Ǻ2 http://purl.org/sig/ont/fma/fma66595
T67 9082-9085 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T68 9093-9096 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T69 9300-9303 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T70 9315-9318 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T71 9326-9329 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T72 9501-9505 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T73 9559-9567 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T74 9819-9822 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T75 9869-9872 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T76 9881-9884 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T77 9889-9892 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T78 9902-9905 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T79 10161-10164 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T80 10186-10189 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T81 10269-10272 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T82 10421-10424 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T83 10470-10473 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T84 10560-10563 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T85 10609-10612 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T86 10710-10713 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T87 10772-10775 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T88 10824-10827 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T89 10877-10880 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T90 11008-11011 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T91 11169-11172 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T92 11218-11221 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T93 11386-11389 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T94 11453-11456 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T95 11509-11512 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T96 11701-11704 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T97 11726-11729 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T98 11810-11813 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T99 11814-11817 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T100 11901-11904 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T101 12079-12082 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T102 12083-12086 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T103 12213-12216 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T104 12248-12251 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T105 12283-12286 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T106 12318-12321 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T107 12353-12356 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T108 12391-12394 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T109 12429-12432 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T110 12564-12567 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T111 12576-12579 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T112 12627-12630 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T113 12640-12643 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T114 12754-12761 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T115 12786-12789 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T116 12799-12802 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T117 12812-12815 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T118 12828-12831 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T119 12875-12882 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T120 12899-12902 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T121 12911-12914 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T122 12927-12930 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T123 12972-12979 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T124 13005-13008 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T125 13018-13021 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T126 13034-13037 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T127 13057-13060 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T128 13211-13214 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T129 13288-13291 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T130 13337-13340 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T131 13386-13389 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T132 13434-13437 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T133 13483-13486 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T134 13532-13535 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T135 13795-13799 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T136 13825-13828 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T137 13844-13847 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T138 14152-14155 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T139 14236-14239 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T140 14252-14255 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T141 14258-14261 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T142 14276-14285 Body_part denotes Threonine http://purl.org/sig/ont/fma/fma82765
T143 14458-14471 Body_part denotes Glutamic acid http://purl.org/sig/ont/fma/fma82762
T144 14476-14482 Body_part denotes lysine http://purl.org/sig/ont/fma/fma82758
T145 14547-14558 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T146 14668-14671 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T147 14684-14687 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T148 14690-14693 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T149 14708-14717 Body_part denotes Threonine http://purl.org/sig/ont/fma/fma82765
T150 14754-14762 Body_part denotes cysteine http://purl.org/sig/ont/fma/fma82751
T151 14913-14924 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T152 15034-15037 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T153 15059-15062 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T154 15077-15085 Body_part denotes Tyrosine http://purl.org/sig/ont/fma/fma82768
T155 15094-15103 Body_part denotes Glutamine http://purl.org/sig/ont/fma/fma82752
T156 15124-15130 Body_part denotes Serine http://purl.org/sig/ont/fma/fma82764
T157 15344-15355 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T158 15456-15459 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T159 15562-15572 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T160 15629-15632 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T161 15808-15812 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T162 15938-15941 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T163 16027-16030 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T164 16104-16111 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T165 16239-16242 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T166 16269-16279 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T167 16364-16374 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T168 16406-16409 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T169 16462-16465 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T170 16487-16497 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T171 16582-16592 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T172 16624-16627 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T173 16806-16810 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T174 17420-17424 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T175 17758-17761 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T176 17768-17771 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T177 17956-17959 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T178 18002-18005 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T179 18014-18024 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T180 18116-18119 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T181 18155-18158 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T182 18194-18197 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T183 18234-18237 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T184 18276-18279 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T185 19134-19147 Body_part denotes reticulocytes http://purl.org/sig/ont/fma/fma66785
T186 19289-19302 Body_part denotes reticulocytes http://purl.org/sig/ont/fma/fma66785
T187 19489-19497 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T188 20010-20014 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T189 20199-20206 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T190 20389-20397 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T191 20572-20576 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T192 20776-20788 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T193 20883-20891 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T194 20935-20939 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T195 20961-20964 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T196 20978-20981 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T197 20997-21000 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T198 21038-21041 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T199 21050-21053 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T200 21062-21065 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T201 21124-21127 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T202 21158-21161 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T203 21171-21174 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T204 21184-21187 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T205 21203-21206 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T206 21242-21247 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T207 21386-21390 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T208 21931-21938 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T209 22057-22067 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T210 22183-22187 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T211 22224-22227 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T212 22666-22679 Body_part denotes reticulocytes http://purl.org/sig/ont/fma/fma66785
T213 22751-22754 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T214 23125-23132 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T215 23151-23158 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T216 23232-23240 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T217 23339-23347 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T218 23424-23428 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T219 23488-23496 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T220 24117-24120 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T221 24121-24124 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T222 24670-24678 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T223 24889-24897 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 22057-22067 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 37-41 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T2 118-122 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T3 138-146 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 647-651 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 1337-1345 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 1559-1567 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 2162-2195 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T8 2209-2217 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 2246-2266 Disease denotes respiratory disorder http://purl.obolibrary.org/obo/MONDO_0005087
T10 2366-2370 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 2607-2611 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 2825-2829 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 3152-3156 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 3955-3959 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 4247-4255 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 4898-4906 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 5004-5008 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 6233-6237 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 6613-6617 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 7104-7107 Disease denotes PAN http://purl.obolibrary.org/obo/MONDO_0014306|http://purl.obolibrary.org/obo/MONDO_0019170
T22 8987-8990 Disease denotes IED http://purl.obolibrary.org/obo/MONDO_0013184
T23 9663-9666 Disease denotes PAN http://purl.obolibrary.org/obo/MONDO_0014306|http://purl.obolibrary.org/obo/MONDO_0019170
T25 19472-19476 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 19635-19639 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 20401-20405 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 20533-20537 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 20706-20710 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T30 20897-20901 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 21029-21037 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 21347-21355 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 21406-21409 Disease denotes DTH http://purl.obolibrary.org/obo/MONDO_0002459
T34 21942-21946 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T35 22296-22300 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 23055-23063 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 23172-23176 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 23221-23225 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 23385-23389 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 23757-23761 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 24029-24033 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 24276-24280 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 99-100 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 105-110 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 168-169 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 229-241 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T5 248-251 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 279-284 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 291-292 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 397-402 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 609-610 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 659-660 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T11 791-792 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T12 825-826 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 903-904 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1007-1013 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T15 1111-1114 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 1400-1403 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 1416-1417 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1487-1499 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T19 1703-1706 http://purl.obolibrary.org/obo/CLO_0054057 denotes 181
T20 1938-1943 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 2087-2094 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes Primate
T22 2119-2127 http://purl.obolibrary.org/obo/NCBITaxon_40674 denotes Mammalia
T23 2149-2155 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T24 2395-2398 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 2618-2623 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 2740-2746 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T27 2764-2767 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 2870-2875 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T29 3045-3051 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T30 3522-3523 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 3607-3613 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T32 3639-3640 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 3678-3683 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T34 3785-3786 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 3914-3921 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T36 3990-3995 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T37 4055-4056 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 4133-4134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 4295-4300 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T40 4306-4307 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 4863-4875 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T42 5041-5047 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T43 5188-5190 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T44 5318-5324 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T45 5444-5450 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T46 5478-5484 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T47 5508-5509 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 5558-5564 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T49 5636-5639 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T50 5645-5648 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T51 5650-5657 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cells
T52 5686-5688 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T53 5761-5768 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T54 6065-6071 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T55 6075-6076 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 6468-6476 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T57 6563-6568 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 6652-6656 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T59 6956-6964 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T60 7002-7008 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T61 7104-7107 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes PAN
T62 7136-7138 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T63 7183-7190 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T64 7468-7469 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7494-7501 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T66 7693-7701 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T67 8207-8209 http://purl.obolibrary.org/obo/CLO_0008491 denotes ps
T68 8304-8306 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T69 8367-8369 http://purl.obolibrary.org/obo/CLO_0008491 denotes ps
T70 8427-8429 http://purl.obolibrary.org/obo/CLO_0001562 denotes Ǻ2
T71 8427-8429 http://purl.obolibrary.org/obo/CLO_0001563 denotes Ǻ2
T72 8473-8474 http://purl.obolibrary.org/obo/CLO_0001020 denotes Ǻ
T73 8537-8538 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 8547-8549 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T75 8598-8603 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T76 9499-9505 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T77 9663-9666 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes PAN
T78 10104-10112 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T79 10492-10499 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T80 10564-10565 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 10613-10614 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 10714-10718 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T83 10776-10780 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T84 10828-10829 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T85 10881-10882 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 11241-11248 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T87 11648-11656 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T88 12217-12221 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T89 12252-12253 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T90 12287-12288 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T91 12322-12323 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T92 12657-12658 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 12803-12807 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T94 12816-12817 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T95 12915-12916 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T96 13292-13293 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T97 13341-13342 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T98 13390-13394 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T99 13438-13442 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T100 13487-13488 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T101 13536-13537 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T102 13776-13777 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 13793-13799 http://purl.obolibrary.org/obo/CL_0000084 denotes T-Cell
T104 14087-14088 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 14240-14241 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T106 14350-14351 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 14520-14521 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 14672-14673 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T109 14815-14816 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 15178-15179 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 15317-15318 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 15562-15580 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T113 15562-15580 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T114 15672-15673 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 15806-15812 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T116 15942-15943 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T117 16175-16181 http://purl.obolibrary.org/obo/CLO_0001627 denotes Å as a
T118 16211-16212 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T119 16243-16244 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T120 16269-16287 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T121 16269-16287 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T122 16320-16324 http://purl.obolibrary.org/obo/CLO_0001869 denotes B. B
T123 16364-16382 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T124 16364-16382 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T125 16410-16411 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T126 16487-16505 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T127 16487-16505 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T128 16538-16542 http://purl.obolibrary.org/obo/CLO_0002709 denotes D. B
T129 16582-16600 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residue
T130 16582-16600 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residue
T131 16804-16810 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T132 16924-16931 http://purl.obolibrary.org/obo/PR_000018263 denotes Peptide
T133 17272-17273 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T134 17278-17279 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T135 17329-17330 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 17418-17424 http://purl.obolibrary.org/obo/CL_0000084 denotes T-Cell
T137 17442-17443 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T138 17558-17559 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T139 17877-17878 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 18120-18121 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T141 18159-18163 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T142 18198-18199 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T143 18408-18409 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 18494-18495 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T145 18500-18501 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T146 18594-18595 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T147 18679-18680 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T148 18985-18986 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 19086-19093 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T150 19483-19488 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T151 19717-19719 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T152 19985-19993 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T153 20008-20014 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T154 20063-20065 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T155 20264-20269 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T156 20512-20513 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T157 20570-20576 http://purl.obolibrary.org/obo/CL_0000084 denotes T–Cell
T158 20651-20652 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T159 20752-20759 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T160 20862-20863 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 20933-20939 http://purl.obolibrary.org/obo/CL_0000084 denotes T-Cell
T162 21042-21043 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T163 21054-21055 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T164 21081-21090 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T165 21162-21166 http://purl.obolibrary.org/obo/CLO_0001553 denotes A*11
T166 21175-21176 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T167 21219-21222 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T168 21228-21231 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T169 21240-21247 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T170 21384-21390 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T171 21856-21863 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T172 22039-22044 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T173 22045-22067 http://purl.obolibrary.org/obo/UBERON_0004802 denotes respiratory epithelium
T174 22142-22144 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T175 22181-22187 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T176 22518-22519 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T177 22618-22625 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T178 23008-23009 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T179 23422-23428 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T180 23539-23541 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T181 23690-23691 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T182 23861-23869 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T183 23880-23886 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T184 24011-24012 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 24065-24068 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T186 24097-24103 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T187 24138-24141 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T188 24222-24229 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T189 24534-24539 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T190 24543-24550 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T191 24679-24680 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T192 24898-24899 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 499-506 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T2 561-569 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T3 679-686 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T4 799-806 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T5 1014-1021 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T6 1135-1142 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T7 1185-1192 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T8 1245-1256 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T9 2791-2798 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T10 3099-3106 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 3170-3177 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T12 3228-3230 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T13 3914-3921 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T14 4061-4066 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T15 4067-4071 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T16 4093-4100 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T17 4332-4337 Chemical denotes bases http://purl.obolibrary.org/obo/CHEBI_22695
T18 4417-4425 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T19 4529-4537 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T20 4595-4603 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T21 4693-4701 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T22 4886-4894 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T23 4958-4966 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T24 5048-5055 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T25 5126-5134 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T26 5207-5215 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T27 5783-5790 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 5803-5810 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T29 5874-5876 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T30 5909-5917 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T31 6108-6115 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T32 6158-6165 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T33 6369-6377 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T34 6396-6403 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T35 6411-6418 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T36 6455-6462 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T37 6477-6489 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T38 6591-6599 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T39 6644-6651 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T40 6676-6683 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T41 6698-6700 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T42 6776-6783 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T43 6819-6826 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T44 6919-6926 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T45 6965-6977 Chemical denotes Glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T46 7009-7016 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T47 7061-7068 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T48 7104-7107 Chemical denotes PAN http://purl.obolibrary.org/obo/CHEBI_53571|http://purl.obolibrary.org/obo/CHEBI_61639
T50 7183-7190 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T51 7248-7250 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T52 7642-7645 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T54 7693-7701 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T55 8181-8192 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T56 8181-8186 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T57 8187-8192 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T58 8304-8306 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T59 8328-8333 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T60 8454-8459 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T61 8460-8466 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T63 8467-8472 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T64 8547-8549 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T65 9086-9088 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T66 9319-9321 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T67 9550-9558 Chemical denotes allergen http://purl.obolibrary.org/obo/CHEBI_50904
T68 9559-9567 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T69 9663-9666 Chemical denotes PAN http://purl.obolibrary.org/obo/CHEBI_53571|http://purl.obolibrary.org/obo/CHEBI_61639
T71 9899-9901 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T72 10104-10112 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T73 10183-10185 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T74 10467-10469 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T75 10492-10499 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T76 11012-11014 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T77 11050-11052 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T78 11215-11217 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T79 11222-11224 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T80 11241-11248 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T81 11648-11656 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T82 11723-11725 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T83 11798-11805 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T84 11872-11875 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T86 12145-12147 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T87 12185-12187 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T88 12603-12610 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T89 12637-12639 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T90 12754-12761 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T91 12875-12882 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T92 12972-12979 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T93 13067-13069 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T94 13841-13843 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T95 13860-13868 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T96 14210-14217 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T97 14322-14329 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T98 14352-14360 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T99 14429-14434 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T100 14458-14471 Chemical denotes Glutamic acid http://purl.obolibrary.org/obo/CHEBI_18237
T101 14467-14471 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T102 14476-14482 Chemical denotes lysine http://purl.obolibrary.org/obo/CHEBI_18019|http://purl.obolibrary.org/obo/CHEBI_25094
T104 14522-14526 Chemical denotes salt http://purl.obolibrary.org/obo/CHEBI_24866|http://purl.obolibrary.org/obo/CHEBI_26710
T106 14547-14558 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T107 14547-14552 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T108 14553-14558 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T109 14642-14649 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T110 14754-14762 Chemical denotes cysteine http://purl.obolibrary.org/obo/CHEBI_15356
T111 14786-14793 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T112 14817-14825 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T113 14894-14899 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T114 14913-14924 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T115 14913-14918 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T116 14919-14924 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T117 15008-15015 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T118 15077-15085 Chemical denotes Tyrosine http://purl.obolibrary.org/obo/CHEBI_17895|http://purl.obolibrary.org/obo/CHEBI_18186
T120 15094-15103 Chemical denotes Glutamine http://purl.obolibrary.org/obo/CHEBI_28300
T121 15124-15130 Chemical denotes Serine http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_17822
T123 15150-15157 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T124 15180-15188 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T125 15257-15262 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T126 15319-15323 Chemical denotes salt http://purl.obolibrary.org/obo/CHEBI_24866|http://purl.obolibrary.org/obo/CHEBI_26710
T128 15344-15355 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T129 15344-15349 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T130 15350-15355 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T131 15562-15580 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T132 15562-15572 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T133 15562-15567 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T134 15568-15572 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T135 16104-16111 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T136 16112-16118 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T137 16269-16287 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T138 16269-16279 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T139 16269-16274 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T140 16275-16279 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T141 16364-16382 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T142 16364-16374 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T143 16364-16369 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T144 16370-16374 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T145 16487-16505 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T146 16487-16497 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T147 16487-16492 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T148 16493-16497 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T149 16582-16600 Chemical denotes amino acid residue http://purl.obolibrary.org/obo/CHEBI_33708
T150 16582-16592 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T151 16582-16587 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T152 16588-16592 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T153 16914-16922 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T154 16924-16931 Chemical denotes Peptide http://purl.obolibrary.org/obo/CHEBI_16670
T155 16941-16948 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T156 17772-17774 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T157 18014-18024 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T158 18020-18024 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T159 18881-18888 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T160 19086-19093 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T161 19489-19497 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T162 19985-19993 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T163 20015-20022 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T164 20199-20206 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T165 20389-20397 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T166 20776-20788 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T167 20874-20879 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T168 20883-20891 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T169 20982-20984 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T170 21066-21068 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T171 21134-21136 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T172 21406-21409 Chemical denotes DTH http://purl.obolibrary.org/obo/CHEBI_16398
T173 21931-21938 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T174 21994-22005 Chemical denotes Angiotensin http://purl.obolibrary.org/obo/CHEBI_2719
T175 22418-22425 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T176 22618-22625 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T177 22849-22856 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T178 23125-23132 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T179 23137-23143 Chemical denotes nucleo http://purl.obolibrary.org/obo/CHEBI_33252
T180 23151-23158 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T181 23232-23240 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T182 23339-23347 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T183 23429-23436 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T184 23488-23496 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T185 23596-23599 Chemical denotes HMM http://purl.obolibrary.org/obo/CHEBI_24564
T186 23861-23869 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T187 23963-23970 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T188 24057-24064 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T189 24222-24229 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2712-2736 http://purl.obolibrary.org/obo/GO_0002250 denotes adaptive immune response
T2 2721-2736 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T3 3648-3663 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 4564-4577 http://purl.obolibrary.org/obo/GO_0032774 denotes RNA synthesis
T5 4568-4577 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T6 4741-4758 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T7 4741-4758 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T8 4779-4793 http://purl.obolibrary.org/obo/GO_0019068 denotes viral assembly
T9 4811-4820 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T10 4811-4820 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T11 4825-4837 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T12 5158-5175 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T13 5158-5175 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T14 5180-5186 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T15 5239-5251 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T16 13874-13883 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T17 17831-17846 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T18 21233-21239 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T19 21384-21404 http://purl.obolibrary.org/obo/GO_0042098 denotes T-cell proliferation
T20 21386-21404 http://purl.obolibrary.org/obo/GO_0008283 denotes cell proliferation
T21 23520-23537 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T22 23520-23537 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-88 Sentence denotes Epitope based vaccine prediction for SARS-COV-2 by deploying immuno-informatics approach
T2 90-98 Sentence denotes Abstract
T3 99-211 Sentence denotes A new virus termed SARS-COV-2 (causing COVID-19 disease) can exhibit a progressive, fatal impact on individuals.
T4 212-309 Sentence denotes The World Health Organization (WHO) has declared the spread of the virus to be a global pandemic.
T5 310-403 Sentence denotes Currently, there are over 1 million cases and over 100,000 confirmed deaths due to the virus.
T6 404-471 Sentence denotes Hence, prophylactic and therapeutic strategies are promptly needed.
T7 472-570 Sentence denotes In this study we report an epitope, ITLCFTLKR, which is biochemically fit to HLA allelic proteins.
T8 571-658 Sentence denotes We propose that this could be used as a potential vaccine candidate against SARS-COV-2.
T9 659-793 Sentence denotes A selected putative epitope and HLA-allelic complexes show not only better binding scores, but also RMSD values in the range of 0–1 Å.
T10 794-891 Sentence denotes This epitope was found to have a 99.8% structural favorability as per Ramachandran-plot analysis.
T11 892-1031 Sentence denotes Similarly, a suitable range of IC50 values and population coverage was obtained to represent greater validation of T-cell epitope analysis.
T12 1032-1160 Sentence denotes Stability analysis using MDWeb and half-life analysis using the ProtParam tool has confirmed that this epitope is well-selected.
T13 1161-1303 Sentence denotes This new methodology of epitope-based vaccine prediction is fundamental and fast in application, ad can be economically beneficial and viable.
T14 1305-1320 Sentence denotes 1 Introduction
T15 1321-1506 Sentence denotes The outbreak of COVID-19 in the Hubei region of the Chinese city of Wuhan [37] has resulted in a difficult situation for the global populace and for the World Health Organization (WHO).
T16 1507-1608 Sentence denotes On 30 Jan 2020, WHO declared an emergency regarding COVID-19 spread, prevention, and control [28,29].
T17 1609-1721 Sentence denotes As of 20 March 2020, there are over 240,000 cases and over 10,000 confirmed deaths, affecting 181 countries [9].
T18 1722-1906 Sentence denotes Present updates indicate that there are over 1 million confirmed cases and over 100,000 deaths worldwide [39] (information is obtained from https://www.worldometers.info/coronavirus/).
T19 1907-2161 Sentence denotes The coronavirus is an RNA type virus with positive sense strand feature and is associated with the Coronaviridae family under order Nidovirales, and is found to be dispersed among Primate order, members of class Mammalia, and specifically in humans [31].
T20 2162-2377 Sentence denotes Severe acute respiratory syndrome coronavirus (SARS-CoV) [11,21,22] and Middle East respiratory disorder coronavirus (MERS-CoV) [7,40], classified as β-coronaviruses, are found to be related to the novel SARS-COV-2.
T21 2378-2455 Sentence denotes Until now, there has been no efficacious therapy to regulate its spread [24].
T22 2456-2624 Sentence denotes Investigating its spread across continents and the vulnerability, there is an urgent need to craft vaccines for reinforcing immune defense against the SARS-COV-2 virus.
T23 2625-2747 Sentence denotes One of the strategies to combat it is the development of vaccines that can initiate an adaptive immune response in humans.
T24 2748-2910 Sentence denotes Here an attempt has been made to design an epitope based vaccine directed at SARS-COV-2, by analyzing the proteome of the virus by using Immuno-informatics tools.
T25 2911-3163 Sentence denotes In this study, we deployed the use of various bioinformatics servers and Immuno-informatics tools for identifying and recognizing the T-cell epitopes from the intensive study of available protein sequences and structures that are related to SARS-COV-2.
T26 3164-3443 Sentence denotes These epitope stretches can interact with MHC Class I and Class II HLA alleles; further validation of epitopes was analyzed by Ramachandran Plot analysis, Antigenicity parameters evaluation, Toxicity analysis, Population coverage, Molecular dynamics, and ProtParam analysis [19].
T27 3444-3585 Sentence denotes This approach is an excellent method in modern vaccine design, as it provides a lead over classical trial and error methods of wet labs [23].
T28 3586-3735 Sentence denotes We tried to identify T-cell epitopes that can elicit a robust immune response in the global human population and act as potential vaccine candidates.
T29 3736-3859 Sentence denotes However, the ability of these epitopes to act as a vaccine candidate needs to be analyzed in Molecular biology lab studies.
T30 3860-3965 Sentence denotes Our investigation can open new dimensions in crafting peptide-based vaccine regimens for Novel SARS-COV2.
T31 3966-4040 Sentence denotes The greatest decline in virus expansion was noted following ORF3a removal.
T32 4041-4246 Sentence denotes ORF7a encodes a 122-amino-acid type I transmembrane protein and structural studies disclose a packed seven-stranded β sandwich comparable in fold and topology to members of the immunoglobulin super family.
T33 4247-4338 Sentence denotes SARS-CoV is an enveloped, positive-stranded RNA virus with a genome of around 29,700 bases.
T34 4339-4848 Sentence denotes The genome incorporates at least 14 open reading frames (ORFs) that encode 28 proteins in three distinct classes: two large polyproteins P1a and P1ab that are cleaved into 16 non-structural proteins (nsp1–nsp16) during viral RNA synthesis; four structural proteins (S, E, M and N) that are necessary for viral entrance and gathering; and eight accessory proteins that are assumed to be dispensable for viral replication, but may facilitate viral assembly and take part in virulence and pathogenesis (Fig. 1 ).
T35 4849-4912 Sentence denotes Fig. 1 Genome organization and viral proteins of SARS-CoV [44].
T36 4913-5192 Sentence denotes In our investigatory study, out of five, two proteins namely ORF-3a and ORF-7a specific to SARS-COV-2 were found to be putative T-cell epitope determinants that create useful information to distinguish, and these proteins are also important for viral replication and growth [41].
T37 5193-5317 Sentence denotes Both of these proteins may influence in viral pathogenesis and disease spread, although the literature lacks unanimity [43].
T38 5318-5460 Sentence denotes B-cell epitopes prediction is still considered to be untrustworthy for both linear and conformational epitopes as compared to T-cell epitopes.
T39 5461-5535 Sentence denotes Furthermore, the B-cell epitopes do not elicit a strong antibody response.
T40 5536-5610 Sentence denotes For this reason, only T-cell epitopes are considered in the present study.
T41 5611-5692 Sentence denotes It is capable to produce CD4+ and CD8+ T-cells with long-lasting response [45]. .
T42 5693-5882 Sentence denotes In one of the recent studies, epitopes were designed, but they have focused on the single protein (i.e. SPIKE protein) to generate multiple epitopes like 13 for MHC I and 3 for MHC II [46].
T43 5883-6085 Sentence denotes We have analyzed multiple proteins to screen only effective epitopes based on various in-silico filters, to provide the most appropriate and authentic epitopes, which can be further tested in a wet lab.
T44 6087-6101 Sentence denotes 2 Methodology
T45 6103-6152 Sentence denotes 2.1 Protein retrieval and allergenicity analysis
T46 6153-6355 Sentence denotes Five protein sequences were selected from NCBI-GenBank, listed in Table 1 , for SARS-COV-2 based on their Allergenicity that relies on the Tanimoto similarity index score produced by AllergenFP 1.0 [8].
T47 6356-6574 Sentence denotes The selected proteins were the envelope protein, ORF3a protein, nucleocapsid phosphoprotein, ORF7a protein, and membrane glycoprotein, which are crucial for the structural integrity and functionality of the virus [38].
T48 6575-6643 Sentence denotes Table 1 List of proteins selected for SARS COV-2 with allergenicity.
T49 6644-6675 Sentence denotes Protein Gene Bank accession no.
T50 6676-6756 Sentence denotes Protein name Allergen FP Score (Tanimoto similarity Index) Allergen/Non-Allergen
T51 6757-6801 Sentence denotes QHD43418.1 Envelop Protein 0.87 Non-Allergen
T52 6802-6844 Sentence denotes QHD43417.1 ORF3a Protein 0.84 Non-Allergen
T53 6845-6901 Sentence denotes QHD43423.2 Nulceocapsid Phosphoprotein 0.85 Non-Allergen
T54 6902-6944 Sentence denotes QHD43421.1 ORF7a protein 0.80 Non-Allergen
T55 6945-6995 Sentence denotes QHD43419.1 Membrane Glycoprotein 0.83 Non-Allergen
T56 6997-7047 Sentence denotes 2.2 T-cell epitope prediction for MHC HLA alleles
T57 7048-7353 Sentence denotes IEDB (Immune epitope database) [20] along with NetMHCII PAN 3.2 and NETMHC 4.0 servers [18] were effectively used for finding putative peptide sequences that were aimed to interact with the MHC Class II and I HLA alleles, respectively (because of efficient algorithms based on artificial neural networks).
T58 7354-7510 Sentence denotes The VaxiJen score is determined for screening the best antigenic epitopes using the VaxiJen online tool [10] with a threshold ≥ 1.0 for the viruses’ domain.
T59 7512-7539 Sentence denotes 2.3 Structural prediction:
T60 7540-7577 Sentence denotes Putative epitopes and MHC HLA alleles
T61 7578-7772 Sentence denotes The epitopes 3D structural findings were conducted by using the PEP-FOLD-3.5 server [25,33,34] and MHC HLA Allelic peptides tertiary or 3D structure were obtained from the RCSB-PDB database [4].
T62 7774-7805 Sentence denotes 2.4 Molecular docking analysis
T63 7806-8023 Sentence denotes The selected epitopes and HLA complexes were docked for calculating refined interactions and binding energies, along with atomic contact energy (ACE), by using two docking web-servers: DINC 2.0 [2] and PatchDock [32].
T64 8025-8086 Sentence denotes 2.5 Molecular dynamics-simulation analysis of docked complex
T65 8087-8251 Sentence denotes Molecular dynamics study was conducted to analyze RMSD values and atomic fluctuations for all amino acids under the 100 ps time frame by deploying the MDWeb server.
T66 8252-8362 Sentence denotes MDWeb server was deployed to analyze Coarse grained MD Brownian dynamics (C-alpha) with specifications → Time:
T67 8363-8609 Sentence denotes 100 ps, output frequency (steps) = 10, force constant (kcal/mol Ǻ2) = 40, distance between alpha carbon atoms(Ǻ) = 3.8 for both the interacting epitopes, and it was based on a GROMACS MD setup with solvation using an Amber-99sb* force-field [17].
T68 8611-8677 Sentence denotes 2.6 Toxicity, Ramachandran-plot, and population coverage analysis
T69 8678-8957 Sentence denotes The ToxinPred server [16] is utilized for determining the toxicity scoring of Epitopes for selecting non-toxic ones; also, the Ramachandran plot analysis was deployed by using the MolProbity 4.2 server [6] to analyze the quantitative presence of residues in the favorable region.
T70 8958-9188 Sentence denotes The Immune Epitope Database (IED) resource web-server of population coverage was used to predict population coverage of the MHC II and MHC I alleles that interact with screened out epitopes based on their restriction database [5].
T71 9189-9337 Sentence denotes The MHCPred web-server was effectively used in quantitative prediction of sorted out epitopes interacting with HLA alleles of MHC II and MHC I [15].
T72 9338-9480 Sentence denotes Thereafter the ProtParam tool [42] of the ExPASy server was used to screen final stable epitopes based on the instability index and half-life.
T73 9482-9492 Sentence denotes 3 Results
T74 9494-9545 Sentence denotes 3.1 T-cell epitopes prediction and VaxiJen scoring
T75 9546-9831 Sentence denotes Non-allergen proteins selected (Table 1) based on allergenicity scores (by deploying AllergenFP 1.0) New to NetMHCII PAN 3.2 and NETMHC 4.0 servers for determining 1-log50k value and affinity values for selecting the best possible pair of epitopes with their corresponding HLA alleles.
T76 9832-10021 Sentence denotes In Table 2 and Table 3 , results for MHC Class I HLA and MHC Class II HLA alleles paired epitopes along with their VaxiJen scores were represented respectively, to obtain putative epitopes.
T77 10022-10066 Sentence denotes The results are self-explanatory in Fig. 2 .
T78 10067-10228 Sentence denotes Graphical representation of selected peptides for docking are based on their interaction with MHC Class I and Class II HLA alleles along with their antigenicity.
T79 10229-10453 Sentence denotes Table 2 Probable antigenic epitopes and MHC I Allele interaction based on NETMHC 4.0 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).
T80 10454-10548 Sentence denotes NCBI-GenBank ID MHC I Allele POS Core peptide 1-LOG50K Affinity(nM) Vaxijen score Antigenicity
T81 10549-10608 Sentence denotes QHD43417.1 HLA-A*68:01 7 FTIGTVTLK 0.853 4.9 2.0317 ANTIGEN
T82 10609-10660 Sentence denotes HLA-A*31:01 125 RLWLCWKCR 0.74 16.59 1.1604 ANTIGEN
T83 10661-10698 Sentence denotes QHD43418.1 – – – – – – NO INTERACTION
T84 10699-10760 Sentence denotes QHD43419.1 HLA-A*11:01 5 GTITVEELK 0.719 20.98 1.0976 ANTIGEN
T85 10761-10823 Sentence denotes QHD43421.1 HLA-A*11:01 109 ITLCFTLKR 0.71 22.97 2.0208 ANTIGEN
T86 10824-10876 Sentence denotes HLA-A*68:01 109 ITLCFTLKR 0.695 27.24 2.0208 ANTIGEN
T87 10877-10929 Sentence denotes HLA-A*23:01 107 VFITLCFTL 0.621 60.42 1.2490 ANTIGEN
T88 10930-10967 Sentence denotes QHD43423.2 – – – – – – NO INTERACTION
T89 10968-11201 Sentence denotes Table 3 Probable antigenic epitopes and MHC II Allele interaction based on NETMHC II PRED 3.2 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).
T90 11202-11298 Sentence denotes NCBI-GenBank ID MHC II Allele POS Core peptide 1- LOG50K Affinity(nM) Vaxijen score Antigenicity
T91 11299-11336 Sentence denotes QHD43417.1 – – – – – – NO INTERACTION
T92 11337-11374 Sentence denotes QHD43418.1 – – – – – – NO INTERACTION
T93 11375-11441 Sentence denotes QHD43419.1 HLA-DRB1*04:01 55 WLLWPVTA 0.282 2375.78 1.0631 ANTIGEN
T94 11442-11508 Sentence denotes QHD43421.1 HLA-DRB1*01:01 74 VYQLRARSV 0.484 267.05 1.3108 ANTIGEN
T95 11509-11565 Sentence denotes HLA-DRB1*07:01 74 VYQLRARSV 0.342 1235.08 1.3108 ANTIGEN
T96 11566-11603 Sentence denotes QHD43423.2 – – – – – – NO INTERACTION
T97 11604-11768 Sentence denotes Fig. 2 Graphical representation of selected peptides for docking based on their interaction with MHC Class I and Class II HLA alleles along with their Antigenicity.
T98 11770-11825 Sentence denotes 3.2 Structural findings of epitope and MHC HLA-Alleles
T99 11826-11967 Sentence denotes Epitope structures were obtained by using the PEP-FOLD-3.5 web-server; the HLA allele's structures were retrieved from the RCSB-PDB database.
T100 11968-12059 Sentence denotes In Table 4 the crystal structure/model structure details with reference PDB-Id is provided.
T101 12060-12148 Sentence denotes Table 4 Listing of MHC HLA-Alleles respective Crystal structures/Models with the PDB ID.
T102 12149-12212 Sentence denotes Allele Name Template structure (PDB-ID) Crystal structure/Model
T103 12213-12247 Sentence denotes HLA-A*11:01 2HN7 CRYSTAL STRUCTURE
T104 12248-12282 Sentence denotes HLA-A*23:01 3I6L CRYSTAL STRUCTURE
T105 12283-12317 Sentence denotes HLA-A*31:01 3RL1 CRYSTAL STRUCTURE
T106 12318-12352 Sentence denotes HLA-A*68:01 6PBH CRYSTAL STRUCTURE
T107 12353-12390 Sentence denotes HLA-DRB1*01:01 4AH2 CRYSTAL STRUCTURE
T108 12391-12428 Sentence denotes HLA-DRB1*04:01 5LAX CRYSTAL STRUCTURE
T109 12429-12466 Sentence denotes HLA-DRB1*07:01 6BIJ CRYSTAL STRUCTURE
T110 12468-12499 Sentence denotes 3.3 Molecular docking analysis
T111 12500-12717 Sentence denotes It was found that FTIGTVTLK, ITLCFTLKR epitopes interacted with MHC class I HLA Alleles, and VYQLRARSV epitope interacted with MHC Class II HLA alleles with a perfect binding score and ACE values as shown in Table 5 .
T112 12718-12939 Sentence denotes The ITLCFTLKR Epitope of the ORF-7A protein exhibits binding with 2 HLA alleles (HLA-A*11:01, HLA-A*68:01) of MHC Class I, while FTIGTVTLK Epitope of ORF-3a protein interact with 1 HLA Allele (HLA-A*68:01) of MHC Class I.
T113 12940-13077 Sentence denotes The VYQLRARSV Epitope of ORF-7a protein interacts clearly with 2 HLA Alleles (HLA-DRB1*01:01, HLA-DRB1*07:01) of the MHC Class II domain.
T114 13078-13202 Sentence denotes Table 5 Binding Energies, Ace Values for Docked Complexes based on DINC Server and PatchDock Analysis for Putative Epitopes.
T115 13203-13277 Sentence denotes Epitope HLA Allele Binding score (kcal/mol) Patch dock score ACE Selection
T116 13278-13326 Sentence denotes FTIGTVTLK HLA-A*68:01 −8.80 8066 178.91 Selected
T117 13327-13375 Sentence denotes RLWLCWKCR HLA-A*31:01 −4.80 8916 117.53 Rejected
T118 13376-13423 Sentence denotes GTITVEELK HLA-A*11:01 −3.80 8040 78.78 Rejected
T119 13424-13472 Sentence denotes ITLCFTLKR HLA-A*11:01 −3.70 8206 −25.88 Selected
T120 13473-13521 Sentence denotes ITLCFTLKR HLA-A*68:01 −7.60 8136 184.55 Selected
T121 13522-13571 Sentence denotes VFITLCFTL HLA-A*23:01 −4.40 7706 −134.91 Rejected
T122 13572-13623 Sentence denotes WLLWPVTLA HLADRB1*04:01 −8.60 9432 −150.96 Rejected
T123 13624-13675 Sentence denotes VYQLRARSV HLADRB1*01:01 −6.20 6874 −168.74 Selected
T124 13676-13726 Sentence denotes VYQLRARSV HLADRB1*07:01 −6.20 6842 262.74 Selected
T125 13727-13927 Sentence denotes In Fig. 3, Fig. 4, Fig. 5 , interactions between a selected three T-Cell epitopes with respective MHC Class I and II HLA-Alleles via hydrogen bond formation and van der Waals interactions is depicted.
T126 13928-14068 Sentence denotes After positive docking results, these epitopes were subjected to further Molecular dynamic simulation and biochemical parameters assessment.
T127 14069-14164 Sentence denotes Fig. 6 represents a graphical plot of binding scores for epitopes interacting with HLA-Alleles.
T128 14165-14269 Sentence denotes Fig. 3 FTIGTVTLK Epitope interaction with an antigen-binding pocket of HLA-A*68:01, of MHC I-HLA Allele.
T129 14270-14596 Sentence denotes Here, Threonine at 2nd,5th, and 7th position in the epitope generate preferably a hydrogen bond due to the presence of partially charged positive and negative atoms, and also 4th position Glutamic acid and lysine at 8th position side chains can form a salt bridge, while other amino acids result in van der Waals interactions.
T130 14597-14701 Sentence denotes Fig. 4 ITLCFTLKR Epitope interaction with an antigen-binding pocket of HLA-A*68:01, of MHC I-HLA Allele.
T131 14702-14962 Sentence denotes Here, Threonine at 2nd and 6th position, as well as cysteine at the 4th position in epitope, generate preferably a hydrogen bond due to the presence of partially charged positive and negative atoms, while other amino acids result in van der Waals interactions.
T132 14963-15393 Sentence denotes Fig. 5 VYQLRARSV Epitope interaction with an antigen-binding pocket of HLA-DRB1*07:01, of MHCII-HLA Allele, Here, Tyrosine at 2nd, Glutamine at 3rd position and Serine at 8th position in epitope generate preferably a hydrogen bond due to the presence of partially charged positive and negative atoms, and 5th and 7tharginine residue side chains can form a salt bridge, while other amino acids result in van der Waals interactions.
T133 15394-15473 Sentence denotes Fig. 6 Binding energy graphical plot for selected Epitope and HLA-Allelic pair.
T134 15475-15522 Sentence denotes 3.4 Molecular dynamics and simulation analysis
T135 15523-15712 Sentence denotes RMSD values and Atomic fluctuation per amino acid residue were obtained for Epitopes interacting with the HLA-Allele structure; this analysis allows a perfect pair selection and validation.
T136 15713-15856 Sentence denotes Moreover, only two Epitope pairs, i.e., ITLCFTLKR and VYQLRARSV, were identified as probable T-cell epitopes and as putative vaccine specimens.
T137 15857-16050 Sentence denotes Fig. 7 shows the RMSD Plot and Atomic fluctuation per residue for the ITLCFTLKR- HLA-A*68:01 complex, the RMSD Plot and Atomic fluctuation per residue for the VYQLRARSV- HLA-DRB1*07:01 complex.
T138 16051-16203 Sentence denotes Both results were positive as best interactions, for protein-ligand docked complexes must possess RMSD values from 0 to 1.0 Å as a preferred range [13].
T139 16204-16213 Sentence denotes Fig. 7 A.
T140 16214-16322 Sentence denotes RMSD Plot for ITLCFTLKR- HLA-A*68:01 complex, for each amino acid residue by Molecular dynamics analysis, B.
T141 16323-16436 Sentence denotes B-Factor (atomic fluctuation) values per amino acid residue for Epitope ITLCFTLKR- HLA-A*68:01 docked complex, C.
T142 16437-16540 Sentence denotes RMSD Plot for VYQLRARSV- HLA-DRB1*07:01, for each amino acid residue by Molecular dynamics analysis, D.
T143 16541-16654 Sentence denotes B-Factor (atomic fluctuation) values per amino acid residue for Epitope VYQLRARSV- HLA-DRB1*07:01 docked complex.
T144 16656-16739 Sentence denotes 3.5 Toxicity analysis, Ramachandran Plot analysis, and population coverage results
T145 16740-16872 Sentence denotes ToxinPred 4.0 server results (in Table 6 .) represent Finalized T-cell Epitopes that were nontoxic from the biochemical perspective.
T146 16873-16923 Sentence denotes Table 6 Results of ToxinPred on probable antigens.
T147 16924-16999 Sentence denotes Peptide/Probable antigen SVM score Hydrophilicity Molecular weight Toxicity
T148 17000-17038 Sentence denotes FTIGTVTLK −1.36 −1.23 979.32 NON-TOXIN
T149 17039-17076 Sentence denotes GTITVEELK −0.98 0.34 989.27 NON-TOXIN
T150 17077-17116 Sentence denotes ITLCFTLKR −1.32 −0.41 1094.51 NON-TOXIN
T151 17117-17156 Sentence denotes VFITLCFTL −1.21 −1.52 1056.46 NON-TOXIN
T152 17157-17196 Sentence denotes WLLWPVTLA −1.18 −1.62 1098.49 NON-TOXIN
T153 17197-17236 Sentence denotes VYQLRARSV −1.07 −0.12 1091.40 NON-TOXIN
T154 17237-17434 Sentence denotes Ramachandran plot analysis, Fig. 8 A and B suggest that most of the residues are allowed in a favored region; this gives more confidence in the structural conformation for targeted T-Cell Epitopes.
T155 17435-17444 Sentence denotes Fig. 8 A.
T156 17445-17557 Sentence denotes 99.8% residues of the ITLCFTLKR Epitope were in the allowed and favored region under Ramachandran Plot analysis.
T157 17558-17560 Sentence denotes B.
T158 17561-17673 Sentence denotes 99.8% residues of the VYQLRARSV Epitope were in the allowed and favored region under Ramachandran Plot analysis.
T159 17674-17908 Sentence denotes MHCPred results (Table 7 ) indicate quantitative estimation of IC50 values for both MHC I and MHC II alleles for respective Epitopes shows elicitation of an immune response when this data is deployed in a population coverage analysis.
T160 17909-18001 Sentence denotes Table 7 MHCPred results depict IC50 Values for HLA Alleles and confidence of the prediction.
T161 18002-18115 Sentence denotes HLA Alleles Amino acid groups Predicted -logIC50 (M) Predicted IC50 Value (nM) Confidence of prediction (Max = 1)
T162 18116-18154 Sentence denotes HLA-A*68:01 FTIGTVTLK 7.116 76.56 1.00
T163 18155-18193 Sentence denotes HLA-A*11:01 ITLCFTLKR 7.028 93.76 1.00
T164 18194-18233 Sentence denotes HLA-A*68:01 ITLCFTLKR 6.282 522.40 0.78
T165 18234-18275 Sentence denotes HLA-DRB1*01:01 VYQLRARSV 7.624 23.77 0.89
T166 18276-18318 Sentence denotes HLA-DRB1*07:01 VYQLRARSV 6.734 184.50 0.89
T167 18319-18502 Sentence denotes IEDB population coverage analysis suggests that ITLCFTLKR and VYQLRARSV epitopes exhibit a suitable population coverage, as depicted in the graphical representation of Fig. 9 A and B.
T168 18503-18586 Sentence denotes This allows only two probable Epitopes for the final selection of vaccine crafting.
T169 18587-18596 Sentence denotes Fig. 9 A.
T170 18597-18678 Sentence denotes Graphical representation of population conservancy analysis of ITLCFTLKR Epitope.
T171 18679-18681 Sentence denotes B.
T172 18682-18763 Sentence denotes Graphical representation of population conservancy analysis of VYQLRARSV Epitope.
T173 18764-18915 Sentence denotes In Table 8 , ProtParam analysis further reveals the stability of the considered epitopes and final revelation of one epitope ITLCFTLKR is screened out.
T174 18916-19148 Sentence denotes This particular Epitope exhibits an instability index of 35.68, with a grand average of hydropathicity (GRAVY) calculated was 0.844, and the estimated half-life for this peptide was determined to be 20 h for mammalian reticulocytes.
T175 19149-19198 Sentence denotes Table 8 ProtParam analysis for selected epitopes.
T176 19199-19334 Sentence denotes Selected Epitope GRAVY Score Instability Index (Indication) Estimated Half-Life(Mammalian reticulocytes) Theoretical pI Aliphatic Index
T177 19335-19385 Sentence denotes ITLCFTLKR 0.844 35.68(Stable) 20 Hours 9.51 130.00
T178 19386-19441 Sentence denotes VYQLRARSV −0.067 70.73(Unstable) 100 Hours 10.83 118.89
T179 19443-19456 Sentence denotes 4 Discussion
T180 19457-19721 Sentence denotes In this study, SARS-COV-2 virus proteins were analyzed by using In-silico methods, and can be further utilized for vaccine trials as per earlier successes in the case of similar SARS-COV studies, and later observed in the development of polyclonal antibodies [27].
T181 19722-19928 Sentence denotes Here we obtained two epitopes ITLCFTLKR and VYQLRARSV after successful docking and molecular dynamics simulation; furthermore, these two epitopes were subjected to population coverage and toxicity analysis.
T182 19929-20067 Sentence denotes Similarly, in another study, for MERS-COV, nucleocapsid peptides were used for T-cell epitope prediction, and found to be successful [36].
T183 20068-20361 Sentence denotes The IEDB and NCBI-GenBank database were fully deployed to analyze sequence homology, to predict targets for COV-2 in case of viral protein identification as per the related studies [14], as ViPR (Virus Pathogen database analysis resource) are also dependent on IEDB and GenBank primarily [30].
T184 20362-20647 Sentence denotes We analyzed five different proteins in SARS-COV-2 for the present study (because of their availability in the NCBI-GenBank database and importance in a structural role in SARS-COV-2 [14] and finally revealed T–Cell epitopes that can be used for wet lab considerations and time savings.
T185 20648-21009 Sentence denotes In a very recent study, different epitopes were found for SARS-COV-2, based on In-silico approaches and focused on only surface glycoprotein [3], but in our research study there are many differences as we analyzed a different group of proteins from SARS-COV-2 to sort out short length T-Cell epitopes specific to MHC I as well as MHC II diversified HLA-Alleles.
T186 21010-21218 Sentence denotes It is reported for SARS-CoV HLA-B*4601, HLA-B*0703, HLA-DR B1*1202 are activated [26], interaction with different MHC I and II allelic forms namely HLA-A*11:01, HLA-A*68:01, HLA-DRB1*01:01 and HLA-DRB1*07:01.
T187 21219-21248 Sentence denotes CD4+ and CD8+ memory T cells.
T188 21249-21449 Sentence denotes Based on prior literature, it is anticipated that it can persist for four years as in the case of SARS-CoV recovered individuals, show T-cell proliferation, DTH response, and production of IFN-γ [12].
T189 21450-21510 Sentence denotes We surmise that our screen can be more effective and useful.
T190 21511-21822 Sentence denotes Primarily molecular docking reveals three Epitopes, but as we proceed to Molecular dynamic simulations, it reveals best interactions for two epitopes i.e., ITLCFTLKR and VYQLRARSV, with acceptable stability analyzed with the help of MDWeb and identified by using best available tools with easy-to-apply methods.
T191 21823-22307 Sentence denotes One recent study was found to be focused on developing monoclonal antibodies like CR-3022 against the Spike protein of SARS-COV-2 that also exhibits interaction with ACE (Angiotensin Converting Enzyme) enzyme of the Human respiratory epithelium and requires complex neutralizing mechanisms for several binding domains [35], whereas in our study the putative T-cell epitopes can directly interact with MHC-Allelic sets that can be useful for developing immunization against SARS-COV-2.
T192 22308-22452 Sentence denotes ProtParam [42] analysis further reveals the stability of the considered epitopes, and final revelation of one epitope ITLCFTLKR is screened out.
T193 22453-22680 Sentence denotes This particular Epitope shows an instability index of 35.68 with a grand average of hydropathicity (GRAVY) calculated as 0.844, and the estimated half-life for this peptide was determined to be 20 h for mammalian reticulocytes.
T194 22681-22819 Sentence denotes Satisfactory population coverage was observed for targeted epitopes - HLA allelic complexes at the worldwide, South Asia, and India level.
T195 22820-22927 Sentence denotes The biochemical integrity in epitope structure was further evident by deploying Ramachandran plot analysis.
T196 22928-23004 Sentence denotes Both epitopes were non-toxic, non-allergenic, and possess good antigenicity.
T197 23005-23543 Sentence denotes In a similar study of the preliminary analysis of COVID-19 vaccine targets [1] the investigators tried to use the spike protein and nucleo-capsid protein sequences of SARS-COV that are homologous to some extant with SARS-COV-2 proteins to determine multiple different epitopes for Vaccine prediction, but in our study out of five two proteins namely ORF-3a and ORF-7a specific to SARS-COV-2 were found to be putative T-cell epitope determinants that create useful information; these proteins are also important for viral replication [41].
T198 23544-23768 Sentence denotes Both biochemical parameters, as well as an advanced HMM and ANN based algorithm in selected Immuno-informatics tools, were very useful to present a clear picture of predicted epitopes for crafting vaccine against SARS-COV-2.
T199 23769-23937 Sentence denotes The only limitation that can be considered as future scope is that these easily synthesized peptides should be tested with In-vitro study for more practical validation.
T200 23939-23952 Sentence denotes 5 Conclusion
T201 23953-24040 Sentence denotes ITLCFTLKR epitope was selected for crafting and designing a vaccine against SARS-COV-2.
T202 24041-24205 Sentence denotes This particular epitope has good antigenicity, exhibits active binding with MHC HLA-Alleles, and has maximum population coverage for different geographical regions.
T203 24206-24314 Sentence denotes Therefore, this peptide can be further used in vaccine design against SARS-COV-2 after wet lab verification.
T204 24315-24457 Sentence denotes This novel approach can also assist life science research groups to reduce time, monetary expenditures, as well as physical hit-trial efforts.
T205 24459-24475 Sentence denotes Ethical approval
T206 24476-24551 Sentence denotes I confirm that authors did not perform any experiments on human or animals.
T207 24553-24586 Sentence denotes Declaration of competing interest
T208 24587-24668 Sentence denotes I confirm that the authors hereby declare they that have no conflict of interest.
T209 24670-24700 Sentence denotes Appendix A Supplementary data
T210 24701-24779 Sentence denotes The following is the Supplementary data to this article:Multimedia component 1
T211 24781-24796 Sentence denotes Acknowledgement
T212 24797-24888 Sentence denotes We acknowledge the support provided by Computational lab of Lovely professional University.
T213 24889-25001 Sentence denotes Appendix A Supplementary data to this article can be found online at https://doi.org/10.1016/j.imu.2020.100338.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1 0-7 BV_9 denotes Epitope
T2 37-47 SP_7 denotes SARS-COV-2
T3 105-110 NCBITaxon:10239 denotes virus
T4 118-128 SP_7 denotes SARS-COV-2
T5 138-146 SP_7 denotes COVID-19
T6 199-210 NCBITaxon:1 denotes individuals
T7 279-284 NCBITaxon:10239 denotes virus
T8 379-385 GO:0016265 denotes deaths
T9 397-402 NCBITaxon:10239 denotes virus
T10 499-506 BV_9 denotes epitope
T11 553-560 SO:0001023 denotes allelic
T12 647-657 SP_7 denotes SARS-COV-2
T13 679-686 BV_9 denotes epitope
T14 695-702 SO:0001023 denotes allelic
T15 703-712 GO:0032991 denotes complexes
T16 799-806 BV_9 denotes epitope
T17 1007-1013 CL:0000084 denotes T-cell
T18 1014-1021 BV_9 denotes epitope
T19 1135-1142 BV_9 denotes epitope
T20 1185-1192 BV_9 denotes epitope
T21 1337-1345 SP_7 denotes COVID-19
T22 1559-1567 SP_7 denotes COVID-19
T23 1685-1691 GO:0016265 denotes deaths
T24 1810-1816 GO:0016265 denotes deaths
T25 1892-1903 NCBITaxon:11118 denotes coronavirus
T26 1911-1922 NCBITaxon:11118 denotes coronavirus
T27 1938-1943 NCBITaxon:10239 denotes virus
T28 2006-2019 NCBITaxon:11118 denotes Coronaviridae
T29 2039-2050 NCBITaxon:99883 denotes Nidovirales
T30 2087-2094 NCBITaxon:9443 denotes Primate
T31 2119-2127 NCBITaxon:40674 denotes Mammalia
T32 2149-2155 NCBITaxon:9606 denotes humans
T33 2162-2174 SP_10 denotes Severe acute
T34 2175-2186 SP_10;UBERON:0001004 denotes respiratory
T35 2187-2207 SP_10 denotes syndrome coronavirus
T36 2209-2217 SP_10 denotes SARS-CoV
T37 2246-2257 UBERON:0001004 denotes respiratory
T38 2267-2278 NCBITaxon:11118 denotes coronavirus
T39 2280-2288 SP_9 denotes MERS-CoV
T40 2314-2327 NCBITaxon:11118 denotes coronaviruses
T41 2366-2376 SP_7 denotes SARS-COV-2
T42 2430-2438 GO:0065007 denotes regulate
T43 2580-2586 UBERON:0002405 denotes immune
T44 2587-2594 GO:0006952 denotes defense
T45 2607-2617 SP_7 denotes SARS-COV-2
T46 2618-2623 NCBITaxon:10239 denotes virus
T47 2712-2720 GO:0002250 denotes adaptive
T48 2721-2727 GO:0002250;UBERON:0002405 denotes immune
T49 2728-2736 GO:0002250 denotes response
T50 2740-2746 NCBITaxon:9606 denotes humans
T51 2791-2798 BV_9 denotes epitope
T52 2825-2835 SP_7 denotes SARS-COV-2
T53 2870-2875 NCBITaxon:10239 denotes virus
T54 3045-3051 CL:0000084;BV_24 denotes T-cell
T55 3052-3060 BV_24 denotes epitopes
T56 3152-3162 SP_7 denotes SARS-COV-2
T57 3170-3177 BV_9 denotes epitope
T58 3206-3217 GO:0042613 denotes MHC Class I
T59 3235-3242 SO:0001023 denotes alleles
T60 3266-3274 BV_9 denotes epitopes
T61 3491-3505 BV_26 denotes vaccine design
T62 3607-3613 CL:0000084;BV_24 denotes T-cell
T63 3614-3622 BV_24 denotes epitopes
T64 3648-3654 UBERON:0002405;GO:0006955 denotes immune
T65 3655-3663 GO:0006955 denotes response
T66 3678-3683 SP_6;NCBITaxon:9606 denotes human
T67 3766-3774 BV_9 denotes epitopes
T68 3955-3964 SP_7 denotes SARS-COV2
T69 3990-3995 NCBITaxon:10239 denotes virus
T70 4041-4046 SO:0000236 denotes ORF7a
T71 4079-4092 GO:0016020 denotes transmembrane
T72 4142-4156 SO:0000984 denotes seven-stranded
T73 4218-4232 GO:0019814 denotes immunoglobulin
T74 4247-4255 SP_10 denotes SARS-CoV
T75 4273-4290 SO:0000984 denotes positive-stranded
T76 4291-4294 BV_22 denotes RNA
T77 4295-4300 BV_22;NCBITaxon:10239 denotes virus
T78 4308-4314 SO:0001026 denotes genome
T79 4343-4349 SO:0001026 denotes genome
T80 4375-4394 SO:0000236 denotes open reading frames
T81 4396-4400 SO:0000236 denotes ORFs
T82 4498-4505 MOP:0000780 denotes cleaved
T83 4539-4543 PR:000014815 denotes nsp1
T84 4544-4549 PR:000000125 denotes nsp16
T85 4558-4563 NCBITaxon:10239 denotes viral
T86 4564-4577 GO:0032774 denotes RNA synthesis
T87 4643-4648 NCBITaxon:10239 denotes viral
T88 4741-4746 NCBITaxon:10239;GO:0006260 denotes viral
T89 4747-4758 GO:0006260 denotes replication
T90 4779-4784 NCBITaxon:10239;GO:0019068 denotes viral
T91 4785-4793 GO:0019068 denotes assembly
T92 4880-4885 NCBITaxon:10239 denotes viral
T93 4898-4906 SP_10 denotes SARS-CoV
T97 4974-4977 SO:0000236 denotes ORF
T98 4985-4988 SO:0000236 denotes ORF
T99 5004-5014 SP_7 denotes SARS-COV-2
T100 5041-5047 CL:0000084 denotes T-cell
T101 5048-5055 BV_9 denotes epitope
T102 5158-5163 NCBITaxon:10239;GO:0006260 denotes viral
T103 5164-5175 GO:0006260 denotes replication
T104 5233-5238 NCBITaxon:10239 denotes viral
T105 5318-5324 CL:0000236;BV_3 denotes B-cell
T106 5325-5333 BV_3 denotes epitopes
T107 5420-5428 BV_9 denotes epitopes
T108 5444-5450 CL:0000084;BV_24 denotes T-cell
T109 5451-5459 BV_24 denotes epitopes
T110 5478-5484 CL:0000236;BV_3 denotes B-cell
T111 5485-5493 BV_3 denotes epitopes
T112 5517-5525 GO:0042571;BV_1;GO:0016064 denotes antibody
T113 5526-5534 BV_1;GO:0016064 denotes response
T114 5558-5564 CL:0000084;BV_24 denotes T-cell
T115 5565-5573 BV_24 denotes epitopes
T116 5636-5639 PR:000001004 denotes CD4
T117 5650-5657 CL:0000084 denotes T-cells
T118 5723-5731 BV_9 denotes epitopes
T119 5833-5841 BV_9 denotes epitopes
T120 5854-5859 GO:0042613 denotes MHC I
T121 5870-5876 GO:0042613 denotes MHC II
T122 5943-5951 BV_9 denotes epitopes
T123 6034-6042 BV_9 denotes epitopes
T124 6233-6243 SP_7 denotes SARS-COV-2
T125 6387-6395 GO:0031975 denotes envelope
T126 6405-6410 PR:000004865 denotes ORF3a
T127 6433-6447 CHEBI:17089;CHEBI:17089 denotes phosphoprotein
T128 6449-6454 PR:P16320 denotes ORF7a
T129 6468-6476 GO:0016020 denotes membrane
T130 6477-6489 CHEBI:17089;CHEBI:17089;BV_11 denotes glycoprotein
T131 6563-6568 NCBITaxon:10239 denotes virus
T135 6613-6623 SP_7 denotes SARS COV-2
T136 7002-7008 CL:0000084 denotes T-cell
T137 7009-7016 BV_9 denotes epitope
T138 7032-7035 GO:0042611 denotes MHC
T139 7040-7047 SO:0001023 denotes alleles
T140 7061-7068 BV_9 denotes epitope
T141 7238-7247 GO:0042613 denotes MHC Class
T142 7261-7268 SO:0001023 denotes alleles
T143 7409-7418 CHEBI:59132;CHEBI:59132 denotes antigenic
T144 7419-7427 BV_9 denotes epitopes
T145 7494-7501 NCBITaxon:10239 denotes viruses
T146 7503-7509 SO:0000417 denotes domain
T147 7549-7557 BV_9 denotes epitopes
T148 7562-7565 GO:0042611 denotes MHC
T149 7570-7577 SO:0001023 denotes alleles
T150 7582-7590 BV_9 denotes epitopes
T151 7677-7680 GO:0042611 denotes MHC
T152 7685-7692 SO:0001023 denotes Allelic
T153 7819-7827 BV_9 denotes epitopes
T154 7836-7845 GO:0032991 denotes complexes
T155 7928-7934 CHEBI:33250;CHEBI:33250 denotes atomic
T156 8079-8086 GO:0032991 denotes complex
T157 8153-8159 CHEBI:33250;CHEBI:33250 denotes atomic
T158 8467-8472 CHEBI:33250;CHEBI:33250 denotes atoms
T159 8507-8515 BV_9 denotes epitopes
T160 8756-8764 BV_9 denotes Epitopes
T161 8969-8976 BV_9 denotes Epitope
T162 9082-9088 GO:0042613 denotes MHC II
T163 9093-9098 GO:0042613 denotes MHC I
T164 9099-9106 SO:0001023 denotes alleles
T165 9139-9147 BV_9 denotes epitopes
T166 9274-9282 BV_9 denotes epitopes
T167 9304-9311 SO:0001023 denotes alleles
T168 9315-9321 GO:0042613 denotes MHC II
T169 9326-9331 GO:0042613 denotes MHC I
T170 9426-9434 BV_9 denotes epitopes
T171 9499-9505 CL:0000084;BV_24 denotes T-cell
T172 9506-9514 BV_24 denotes epitopes
T173 9550-9558 CHEBI:50904;CHEBI:50904 denotes allergen
T174 9785-9793 BV_9 denotes epitopes
T175 9823-9830 SO:0001023 denotes alleles
T176 9869-9880 GO:0042613 denotes MHC Class I
T177 9889-9901 GO:0042613 denotes MHC Class II
T178 9906-9913 SO:0001023 denotes alleles
T179 9921-9929 BV_9 denotes epitopes
T180 10012-10020 BV_9 denotes epitopes
T181 10161-10172 GO:0042613 denotes MHC Class I
T182 10190-10197 SO:0001023 denotes alleles
T196 10246-10255 CHEBI:59132;CHEBI:59132 denotes antigenic
T197 10256-10264 BV_9 denotes epitopes
T198 10269-10272 GO:0042611 denotes MHC
T199 10275-10281 SO:0001023 denotes Allele
T200 10425-10431 SO:0001023 denotes Allele
T201 10985-10994 CHEBI:59132;CHEBI:59132 denotes antigenic
T202 10995-11003 BV_9 denotes epitopes
T203 11008-11014 GO:0042613 denotes MHC II
T204 11015-11021 SO:0001023 denotes Allele
T205 11173-11179 SO:0001023 denotes Allele
T206 11701-11712 GO:0042613 denotes MHC Class I
T207 11730-11737 SO:0001023 denotes alleles
T208 11798-11805 BV_9 denotes epitope
T209 11810-11813 GO:0042611 denotes MHC
T210 11818-11825 SO:0001023 denotes Alleles
T211 11826-11833 BV_9 denotes Epitope
T212 11905-11911 SO:0001023 denotes allele
T218 12079-12082 GO:0042611 denotes MHC
T219 12087-12094 SO:0001023 denotes Alleles
T220 12539-12547 BV_9 denotes epitopes
T221 12564-12575 GO:0042613 denotes MHC class I
T222 12580-12587 SO:0001023 denotes Alleles
T223 12603-12610 BV_9 denotes epitope
T224 12627-12643 GO:0042613 denotes MHC Class II HLA
T225 12644-12651 SO:0001023 denotes alleles
T226 12732-12739 BV_9 denotes Epitope
T227 12747-12750 SO:0000236 denotes ORF
T228 12790-12797 SO:0001023 denotes alleles
T229 12799-12804 PR:000002009 denotes HLA-A
T230 12812-12817 PR:000002009 denotes HLA-A
T231 12828-12837 GO:0042613 denotes MHC Class
T232 12857-12864 BV_9 denotes Epitope
T233 12868-12871 SO:0000236 denotes ORF
T234 12903-12909 SO:0001023 denotes Allele
T235 12911-12916 PR:000002009 denotes HLA-A
T236 12927-12938 GO:0042613 denotes MHC Class I
T237 12954-12961 BV_9 denotes Epitope
T238 12965-12968 SO:0000236 denotes ORF
T239 13009-13016 SO:0001023 denotes Alleles
T240 13018-13026 PR:000002019 denotes HLA-DRB1
T241 13034-13042 PR:000002019 denotes HLA-DRB1
T242 13057-13069 GO:0042613 denotes MHC Class II
T243 13070-13076 SO:0000417 denotes domain
T247 13126-13135 GO:0032991 denotes Complexes
T248 13193-13201 BV_9 denotes Epitopes
T249 13793-13799 CL:0000084;BV_24 denotes T-Cell
T250 13800-13808 BV_24 denotes epitopes
T251 13825-13836 GO:0042613 denotes MHC Class I
T252 13844-13847 PR:000029150 denotes HLA
T253 13848-13855 SO:0001023 denotes Alleles
T254 13966-13974 BV_9 denotes epitopes
T255 14126-14134 BV_9 denotes epitopes
T256 14156-14163 SO:0001023 denotes Alleles
T257 14182-14189 BV_9 denotes Epitope
T258 14210-14217 CHEBI:59132;CHEBI:59132 denotes antigen
T259 14236-14241 PR:000002009 denotes HLA-A
T260 14252-14257 GO:0042613 denotes MHC I
T261 14262-14268 SO:0001023 denotes Allele
T262 14322-14329 BV_9 denotes epitope
T263 14429-14434 CHEBI:33250;CHEBI:33250 denotes atoms
T264 14499-14510 CHEBI:50325;CHEBI:50325 denotes side chains
T265 14522-14526 CHEBI:24866;CHEBI:24866 denotes salt
T266 14614-14621 BV_9 denotes Epitope
T267 14642-14649 CHEBI:59132;CHEBI:59132 denotes antigen
T268 14668-14673 PR:000002009 denotes HLA-A
T269 14684-14689 GO:0042613 denotes MHC I
T270 14694-14700 SO:0001023 denotes Allele
T271 14786-14793 BV_9 denotes epitope
T272 14894-14899 CHEBI:33250;CHEBI:33250 denotes atoms
T273 14980-14987 BV_9 denotes Epitope
T274 15008-15015 CHEBI:59132;CHEBI:59132 denotes antigen
T275 15034-15042 PR:000002019 denotes HLA-DRB1
T276 15053-15058 GO:0042611 denotes MHCII
T277 15063-15069 SO:0001023 denotes Allele
T278 15150-15157 BV_9 denotes epitope
T279 15257-15262 CHEBI:33250;CHEBI:33250 denotes atoms
T280 15296-15307 CHEBI:50325;CHEBI:50325 denotes side chains
T281 15319-15323 CHEBI:24866;CHEBI:24866 denotes salt
T282 15444-15451 BV_9 denotes Epitope
T283 15460-15467 SO:0001023 denotes Allelic
T311 15599-15607 BV_9 denotes Epitopes
T312 15633-15639 SO:0001023 denotes Allele
T313 15732-15739 BV_9 denotes Epitope
T314 15806-15812 CL:0000084;BV_24 denotes T-cell
T315 15813-15821 BV_24 denotes epitopes
T316 15938-15943 PR:000002009 denotes HLA-A
T317 15950-15957 GO:0032991 denotes complex
T318 16027-16035 PR:000002019 denotes HLA-DRB1
T319 16042-16049 GO:0032991 denotes complex
T320 16126-16135 GO:0032991 denotes complexes
T321 16239-16244 PR:000002009 denotes HLA-A
T322 16251-16258 GO:0032991 denotes complex
T323 16333-16339 CHEBI:33250;CHEBI:33250 denotes atomic
T324 16387-16394 BV_9 denotes Epitope
T325 16406-16411 PR:000002009 denotes HLA-A
T326 16425-16432 GO:0032991 denotes complex
T327 16462-16470 PR:000002019 denotes HLA-DRB1
T328 16605-16612 BV_9 denotes Epitope
T329 16624-16632 PR:000002019 denotes HLA-DRB1
T330 16646-16653 GO:0032991 denotes complex
T341 16804-16810 CL:0000084;BV_24 denotes T-cell
T342 16811-16819 BV_24 denotes Epitopes
T345 16914-16922 CHEBI:59132;CHEBI:59132 denotes antigens
T346 17418-17424 CL:0000084;BV_24 denotes T-Cell
T347 17425-17433 BV_24 denotes Epitopes
T348 17477-17484 BV_9 denotes Epitope
T349 17593-17600 BV_9 denotes Epitope
T352 17758-17763 GO:0042613 denotes MHC I
T353 17768-17774 GO:0042613 denotes MHC II
T354 17775-17782 SO:0001023 denotes alleles
T355 17798-17806 BV_9 denotes Epitopes
T356 17831-17837 UBERON:0002405;GO:0006955 denotes immune
T357 17838-17846 GO:0006955 denotes response
T362 17960-17967 SO:0001023 denotes Alleles
T363 18391-18399 BV_9 denotes epitopes
T364 18533-18541 BV_9 denotes Epitopes
T365 18670-18677 BV_9 denotes Epitope
T366 18755-18762 BV_9 denotes Epitope
T369 18844-18852 BV_9 denotes epitopes
T370 18881-18888 BV_9 denotes epitope
T371 18932-18939 BV_9 denotes Epitope
T372 19124-19133 NCBITaxon:40674 denotes mammalian
T373 19134-19147 CL:0000558 denotes reticulocytes
T377 19189-19197 BV_9 denotes epitopes
T378 19472-19482 SP_7 denotes SARS-COV-2
T379 19483-19488 NCBITaxon:10239 denotes virus
T380 19635-19643 SP_10 denotes SARS-COV
T381 19705-19715 GO:0042571 denotes antibodies
T382 19743-19751 BV_9 denotes epitopes
T383 19859-19867 BV_9 denotes epitopes
T384 19962-19970 SP_9 denotes MERS-COV
T385 20008-20014 CL:0000084 denotes T-cell
T386 20015-20022 BV_9 denotes epitope
T387 20143-20151 SO:0000853 denotes homology
T388 20193-20198 NCBITaxon:10239 denotes viral
T389 20401-20411 SP_7 denotes SARS-COV-2
T390 20533-20543 SP_7 denotes SARS-COV-2
T391 20570-20576 CL:0000084;BV_24 denotes T–Cell
T392 20577-20585 BV_24 denotes epitopes
T393 20682-20690 BV_9 denotes epitopes
T394 20706-20716 SP_7 denotes SARS-COV-2
T395 20768-20775 GO:0009986 denotes surface
T396 20776-20788 BV_11;CHEBI:17089;CHEBI:17089 denotes glycoprotein
T397 20897-20907 SP_7 denotes SARS-COV-2
T398 20933-20939 CL:0000084;BV_24 denotes T-Cell
T399 20940-20948 BV_24 denotes epitopes
T400 20961-20966 GO:0042613 denotes MHC I
T401 20978-20984 GO:0042613 denotes MHC II
T402 21001-21008 SO:0001023 denotes Alleles
T403 21029-21037 SP_10 denotes SARS-CoV
T404 21038-21043 PR:000002010 denotes HLA-B
T405 21050-21055 PR:000002010 denotes HLA-B
T406 21062-21065 PR:000029150 denotes HLA
T407 21124-21129 GO:0042613 denotes MHC I
T408 21137-21144 SO:0001023 denotes allelic
T409 21158-21163 PR:000002009 denotes HLA-A
T410 21171-21176 PR:000002009 denotes HLA-A
T411 21184-21192 PR:000002019 denotes HLA-DRB1
T412 21203-21211 PR:000002019 denotes HLA-DRB1
T413 21219-21222 PR:000001004 denotes CD4
T414 21233-21239 GO:0007613;CL:0000813 denotes memory
T415 21240-21247 CL:0000813 denotes T cells
T416 21347-21355 SP_10 denotes SARS-CoV
T417 21366-21377 NCBITaxon:1 denotes individuals
T418 21384-21390 CL:0000084 denotes T-cell
T419 21391-21404 GO:0042098 denotes proliferation
T420 21438-21443 PR:000000017 denotes IFN-γ
T421 21553-21561 BV_9 denotes Epitopes
T422 21652-21660 BV_9 denotes epitopes
T423 21889-21899 GO:0042571 denotes antibodies
T424 21942-21952 SP_7 denotes SARS-COV-2
T425 22039-22044 SP_6;NCBITaxon:9606 denotes Human
T426 22045-22056 UBERON:0000115;GO:0045333 denotes respiratory
T427 22057-22067 UBERON:0000483 denotes epithelium
T428 22133-22140 SO:0000417 denotes domains
T429 22181-22187 CL:0000084;BV_24 denotes T-cell
T430 22188-22196 BV_24 denotes epitopes
T431 22224-22227 GO:0042611 denotes MHC
T432 22228-22235 SO:0001023 denotes Allelic
T433 22296-22306 SP_7 denotes SARS-COV-2
T434 22380-22388 BV_9 denotes epitopes
T435 22418-22425 BV_9 denotes epitope
T436 22469-22476 BV_9 denotes Epitope
T437 22656-22665 NCBITaxon:40674 denotes mammalian
T438 22666-22679 CL:0000558 denotes reticulocytes
T439 22740-22748 BV_9 denotes epitopes
T440 22755-22762 SO:0001023 denotes allelic
T441 22763-22772 GO:0032991 denotes complexes
T442 22849-22856 BV_9 denotes epitope
T443 22933-22941 BV_9 denotes epitopes
T444 22962-22972 CHEBI:50904;CHEBI:50904 denotes allergenic
T445 23055-23063 SP_7 denotes COVID-19
T446 23172-23180 SP_10 denotes SARS-COV
T447 23190-23200 SO:0000853 denotes homologous
T448 23221-23231 SP_7 denotes SARS-COV-2
T449 23273-23281 BV_9 denotes epitopes
T450 23355-23358 SO:0000236 denotes ORF
T451 23366-23369 SO:0000236 denotes ORF
T452 23385-23395 SP_7 denotes SARS-COV-2
T453 23422-23428 CL:0000084 denotes T-cell
T454 23429-23436 BV_9 denotes epitope
T455 23520-23525 NCBITaxon:10239;GO:0006260 denotes viral
T456 23526-23537 GO:0006260 denotes replication
T457 23719-23727 BV_9 denotes epitopes
T458 23757-23767 SP_7 denotes SARS-COV-2
T459 23963-23970 BV_9 denotes epitope
T460 24029-24039 SP_7 denotes SARS-COV-2
T461 24057-24064 BV_9 denotes epitope
T462 24117-24120 GO:0042611 denotes MHC
T463 24125-24132 SO:0001023 denotes Alleles
T464 24253-24267 BV_26 denotes vaccine design
T465 24276-24286 SP_7 denotes SARS-COV-2
T466 24351-24355 UBERON:0000104 denotes life
T467 24534-24539 SP_6;NCBITaxon:9606 denotes human
T468 24543-24550 NCBITaxon:33208 denotes animals
T99602 0-7 BV_9 denotes Epitope
T30127 37-47 SP_7 denotes SARS-COV-2
T89716 105-110 NCBITaxon:10239 denotes virus
T3545 118-128 SP_7 denotes SARS-COV-2
T37403 138-146 SP_7 denotes COVID-19
T40432 199-210 NCBITaxon:1 denotes individuals
T76467 279-284 NCBITaxon:10239 denotes virus
T53137 379-385 GO:0016265 denotes deaths
T12429 397-402 NCBITaxon:10239 denotes virus
T47961 499-506 BV_9 denotes epitope
T58292 553-560 SO:0001023 denotes allelic
T29003 647-657 SP_7 denotes SARS-COV-2
T17586 679-686 BV_9 denotes epitope
T70831 695-702 SO:0001023 denotes allelic
T51661 703-712 GO:0032991 denotes complexes
T33806 799-806 BV_9 denotes epitope
T18714 1007-1013 CL:0000084 denotes T-cell
T45861 1014-1021 BV_9 denotes epitope
T12543 1135-1142 BV_9 denotes epitope
T27466 1185-1192 BV_9 denotes epitope
T82826 1337-1345 SP_7 denotes COVID-19
T78758 1559-1567 SP_7 denotes COVID-19
T63716 1685-1691 GO:0016265 denotes deaths
T22542 1810-1816 GO:0016265 denotes deaths
T22674 1892-1903 NCBITaxon:11118 denotes coronavirus
T53244 1911-1922 NCBITaxon:11118 denotes coronavirus
T65389 1938-1943 NCBITaxon:10239 denotes virus
T64749 2006-2019 NCBITaxon:11118 denotes Coronaviridae
T25833 2039-2050 NCBITaxon:99883 denotes Nidovirales
T46192 2087-2094 NCBITaxon:9443 denotes Primate
T56897 2119-2127 NCBITaxon:40674 denotes Mammalia
T29345 2149-2155 NCBITaxon:9606 denotes humans
T53703 2162-2174 SP_10 denotes Severe acute
T30654 2175-2186 SP_10;UBERON:0001004 denotes respiratory
T67466 2187-2207 SP_10 denotes syndrome coronavirus
T17114 2209-2217 SP_10 denotes SARS-CoV
T57723 2246-2257 UBERON:0001004 denotes respiratory
T72781 2267-2278 NCBITaxon:11118 denotes coronavirus
T59512 2280-2288 SP_9 denotes MERS-CoV
T46636 2314-2327 NCBITaxon:11118 denotes coronaviruses
T56236 2366-2376 SP_7 denotes SARS-COV-2
T67003 2430-2438 GO:0065007 denotes regulate
T1865 2580-2586 UBERON:0002405 denotes immune
T54457 2587-2594 GO:0006952 denotes defense
T44230 2607-2617 SP_7 denotes SARS-COV-2
T59713 2618-2623 NCBITaxon:10239 denotes virus
T40650 2712-2720 GO:0002250 denotes adaptive
T91359 2721-2727 GO:0002250;UBERON:0002405 denotes immune
T56571 2728-2736 GO:0002250 denotes response
T12847 2740-2746 NCBITaxon:9606 denotes humans
T48897 2791-2798 BV_9 denotes epitope
T2196 2825-2835 SP_7 denotes SARS-COV-2
T43863 2870-2875 NCBITaxon:10239 denotes virus
T31242 3045-3051 CL:0000084;BV_24 denotes T-cell
T19721 3052-3060 BV_24 denotes epitopes
T30536 3152-3162 SP_7 denotes SARS-COV-2
T91455 3170-3177 BV_9 denotes epitope
T8122 3206-3217 GO:0042613 denotes MHC Class I
T8898 3235-3242 SO:0001023 denotes alleles
T44532 3266-3274 BV_9 denotes epitopes
T76841 3491-3505 BV_26 denotes vaccine design
T19283 3607-3613 CL:0000084;BV_24 denotes T-cell
T21435 3614-3622 BV_24 denotes epitopes
T85839 3648-3654 UBERON:0002405;GO:0006955 denotes immune
T63617 3655-3663 GO:0006955 denotes response
T62297 3678-3683 SP_6;NCBITaxon:9606 denotes human
T14783 3766-3774 BV_9 denotes epitopes
T54733 3955-3964 SP_7 denotes SARS-COV2
T21604 3990-3995 NCBITaxon:10239 denotes virus
T11044 4041-4046 SO:0000236 denotes ORF7a
T31869 4079-4092 GO:0016020 denotes transmembrane
T44637 4142-4156 SO:0000984 denotes seven-stranded
T61344 4218-4232 GO:0019814 denotes immunoglobulin
T50216 4247-4255 SP_10 denotes SARS-CoV
T19667 4273-4290 SO:0000984 denotes positive-stranded
T82053 4291-4294 BV_22 denotes RNA
T92179 4295-4300 BV_22;NCBITaxon:10239 denotes virus
T58984 4308-4314 SO:0001026 denotes genome
T51120 4343-4349 SO:0001026 denotes genome
T98752 4375-4394 SO:0000236 denotes open reading frames
T88118 4396-4400 SO:0000236 denotes ORFs
T10517 4498-4505 MOP:0000780 denotes cleaved
T40755 4539-4543 PR:000014815 denotes nsp1
T68644 4544-4549 PR:000000125 denotes nsp16
T26777 4558-4563 NCBITaxon:10239 denotes viral
T37869 4564-4577 GO:0032774 denotes RNA synthesis
T38700 4643-4648 NCBITaxon:10239 denotes viral
T29364 4741-4746 NCBITaxon:10239;GO:0006260 denotes viral
T72969 4747-4758 GO:0006260 denotes replication
T61555 4779-4784 NCBITaxon:10239;GO:0019068 denotes viral
T24991 4785-4793 GO:0019068 denotes assembly
T18162 4880-4885 NCBITaxon:10239 denotes viral
T93025 4898-4906 SP_10 denotes SARS-CoV
T82595 4974-4977 SO:0000236 denotes ORF
T57356 4985-4988 SO:0000236 denotes ORF
T67865 5004-5014 SP_7 denotes SARS-COV-2
T52651 5041-5047 CL:0000084 denotes T-cell
T95082 5048-5055 BV_9 denotes epitope
T58730 5158-5163 NCBITaxon:10239;GO:0006260 denotes viral
T76793 5164-5175 GO:0006260 denotes replication
T56542 5233-5238 NCBITaxon:10239 denotes viral
T43953 5318-5324 CL:0000236;BV_3 denotes B-cell
T43700 5325-5333 BV_3 denotes epitopes
T77293 5420-5428 BV_9 denotes epitopes
T1542 5444-5450 CL:0000084;BV_24 denotes T-cell
T63163 5451-5459 BV_24 denotes epitopes
T91374 5478-5484 CL:0000236;BV_3 denotes B-cell
T20933 5485-5493 BV_3 denotes epitopes
T49245 5517-5525 GO:0042571;BV_1;GO:0016064 denotes antibody
T49269 5526-5534 BV_1;GO:0016064 denotes response
T57549 5558-5564 CL:0000084;BV_24 denotes T-cell
T60968 5565-5573 BV_24 denotes epitopes
T85965 5636-5639 PR:000001004 denotes CD4
T95140 5650-5657 CL:0000084 denotes T-cells
T66089 5723-5731 BV_9 denotes epitopes
T41534 5833-5841 BV_9 denotes epitopes
T1910 5854-5859 GO:0042613 denotes MHC I
T89730 5870-5876 GO:0042613 denotes MHC II
T83872 5943-5951 BV_9 denotes epitopes
T65393 6034-6042 BV_9 denotes epitopes
T93584 6233-6243 SP_7 denotes SARS-COV-2
T45672 6387-6395 GO:0031975 denotes envelope
T37281 6405-6410 PR:000004865 denotes ORF3a
T81405 6433-6447 CHEBI:17089;CHEBI:17089 denotes phosphoprotein
T95541 6449-6454 PR:P16320 denotes ORF7a
T76137 6468-6476 GO:0016020 denotes membrane
T816 6477-6489 CHEBI:17089;CHEBI:17089;BV_11 denotes glycoprotein
T70255 6563-6568 NCBITaxon:10239 denotes virus
T132 6613-6623 SP_7 denotes SARS COV-2
T133 6652-6656 SO:0000704 denotes Gene
T134 6965-6979 BV_11;CHEBI:17089;CHEBI:17089 denotes Glycoprotein 0
T11238 6965-6975 SP_7 denotes Glycoprote
T17957 7002-7008 CL:0000084 denotes T-cell
T73773 7009-7016 BV_9 denotes epitope
T46208 7032-7035 GO:0042611 denotes MHC
T23617 7040-7047 SO:0001023 denotes alleles
T74464 7061-7068 BV_9 denotes epitope
T65672 7238-7247 GO:0042613 denotes MHC Class
T97660 7261-7268 SO:0001023 denotes alleles
T46118 7409-7418 CHEBI:59132;CHEBI:59132 denotes antigenic
T10197 7419-7427 BV_9 denotes epitopes
T49731 7494-7501 NCBITaxon:10239 denotes viruses
T17430 7503-7509 SO:0000417 denotes domain
T86453 7549-7557 BV_9 denotes epitopes
T60418 7562-7565 GO:0042611 denotes MHC
T64831 7570-7577 SO:0001023 denotes alleles
T92728 7582-7590 BV_9 denotes epitopes
T43102 7677-7680 GO:0042611 denotes MHC
T89902 7685-7692 SO:0001023 denotes Allelic
T17100 7819-7827 BV_9 denotes epitopes
T31016 7836-7845 GO:0032991 denotes complexes
T90415 7928-7934 CHEBI:33250;CHEBI:33250 denotes atomic
T34560 8079-8086 GO:0032991 denotes complex
T95805 8153-8159 CHEBI:33250;CHEBI:33250 denotes atomic
T80172 8467-8472 CHEBI:33250;CHEBI:33250 denotes atoms
T29153 8507-8515 BV_9 denotes epitopes
T67892 8756-8764 BV_9 denotes Epitopes
T70441 8969-8976 BV_9 denotes Epitope
T62519 9082-9088 GO:0042613 denotes MHC II
T2795 9093-9098 GO:0042613 denotes MHC I
T57459 9099-9106 SO:0001023 denotes alleles
T34218 9139-9147 BV_9 denotes epitopes
T1145 9274-9282 BV_9 denotes epitopes
T75781 9304-9311 SO:0001023 denotes alleles
T73958 9315-9321 GO:0042613 denotes MHC II
T68972 9326-9331 GO:0042613 denotes MHC I
T71312 9426-9434 BV_9 denotes epitopes
T73347 9499-9505 CL:0000084;BV_24 denotes T-cell
T41262 9506-9514 BV_24 denotes epitopes
T88476 9550-9558 CHEBI:50904;CHEBI:50904 denotes allergen
T96857 9785-9793 BV_9 denotes epitopes
T31217 9823-9830 SO:0001023 denotes alleles
T12321 9869-9880 GO:0042613 denotes MHC Class I
T78137 9889-9901 GO:0042613 denotes MHC Class II
T6049 9906-9913 SO:0001023 denotes alleles
T78656 9921-9929 BV_9 denotes epitopes
T43049 10012-10020 BV_9 denotes epitopes
T95133 10161-10172 GO:0042613 denotes MHC Class I
T87558 10190-10197 SO:0001023 denotes alleles
T183 10246-10255 CHEBI:59132;CHEBI:59132 denotes antigenic
T184 10256-10264 BV_9 denotes epitopes
T185 10269-10272 GO:0042611 denotes MHC
T186 10275-10281 SO:0001023 denotes Allele
T187 10425-10431 SO:0001023 denotes Allele
T188 10985-10994 CHEBI:59132;CHEBI:59132 denotes antigenic
T189 10995-11003 BV_9 denotes epitopes
T190 11008-11014 GO:0042613 denotes MHC II
T191 11015-11021 SO:0001023 denotes Allele
T192 11173-11179 SO:0001023 denotes Allele
T193 11390-11394 PR:000002019 denotes DRB1
T194 11701-11712 GO:0042613 denotes MHC Class I
T195 11730-11737 SO:0001023 denotes alleles
T91279 12644-12651 SO:0001023 denotes alleles
T75452 18391-18398 BV_9 denotes epitope
T5347 21158-21163 PR:000002009 denotes HLA-A
T51475 21171-21176 PR:000002009 denotes HLA-A
T16915 24276-24286 SP_7 denotes SARS-COV-2
T58164 22380-22388 BV_9 denotes epitopes
T54814 22418-22425 BV_9 denotes epitope
T97107 22469-22476 BV_9 denotes Epitope
T64154 22656-22665 NCBITaxon:40674 denotes mammalian
T79204 22666-22679 CL:0000558 denotes reticulocytes
T96895 22740-22748 BV_9 denotes epitopes
T98282 22755-22762 SO:0001023 denotes allelic
T3100 22763-22772 GO:0032991 denotes complexes
T2099 22849-22856 BV_9 denotes epitope
T52010 22933-22941 BV_9 denotes epitopes
T93615 22962-22972 CHEBI:50904;CHEBI:50904 denotes allergenic
T44148 23055-23063 SP_7 denotes COVID-19
T48419 23172-23180 SP_10 denotes SARS-COV
T15410 23190-23200 SO:0000853 denotes homologous
T45966 23221-23231 SP_7 denotes SARS-COV-2
T91878 23273-23281 BV_9 denotes epitopes
T64466 23355-23358 SO:0000236 denotes ORF
T31987 23366-23369 SO:0000236 denotes ORF
T22365 23385-23395 SP_7 denotes SARS-COV-2
T96116 23422-23428 CL:0000084 denotes T-cell
T26337 23429-23436 BV_9 denotes epitope
T95242 23520-23525 NCBITaxon:10239;GO:0006260 denotes viral
T76165 23526-23537 GO:0006260 denotes replication
T33956 23719-23727 BV_9 denotes epitopes
T81496 23757-23767 SP_7 denotes SARS-COV-2
T18374 23963-23970 BV_9 denotes epitope
T95440 24029-24039 SP_7 denotes SARS-COV-2
T19239 24057-24064 BV_9 denotes epitope
T52484 24117-24120 GO:0042611 denotes MHC
T40017 24125-24132 SO:0001023 denotes Alleles
T51478 24253-24267 BV_26 denotes vaccine design
T11973 24276-24286 SP_7 denotes SARS-COV-2
T50614 24351-24355 UBERON:0000104 denotes life
T18056 24534-24539 SP_6;NCBITaxon:9606 denotes human
T32888 24543-24550 NCBITaxon:33208 denotes animals

2_test

Id Subject Object Predicate Lexical cue
32352026-31986257-47638057 1396-1398 31986257 denotes 37
32352026-12690091-47638058 2220-2222 12690091 denotes 11
32352026-12690092-47638059 2223-2225 12690092 denotes 21
32352026-12892955-47638060 2226-2228 12892955 denotes 22
32352026-23678167-47638061 2291-2292 23678167 denotes 7
32352026-23075143-47638062 2293-2295 23075143 denotes 40
32352026-32081636-47638063 2451-2453 32081636 denotes 24
32352026-19261195-47638064 4908-4910 19261195 denotes 44
32352026-30822457-47638065 5188-5190 30822457 denotes 41
32352026-18367524-47638066 5313-5315 18367524 denotes 43
32352026-24167156-47638067 6352-6353 24167156 denotes 8
32352026-16339739-47638068 6570-6572 16339739 denotes 38
32352026-22610854-47638069 7080-7082 22610854 denotes 20
32352026-22581768-47638070 7669-7671 22581768 denotes 34
32352026-10592235-47638071 7769-7770 10592235 denotes 4
32352026-15980490-47638072 8019-8021 15980490 denotes 32
32352026-22437851-47638073 8605-8607 22437851 denotes 17
32352026-20057044-47638074 8881-8882 20057044 denotes 6
32352026-12824380-47638075 9333-9335 12824380 denotes 15
32352026-12862314-47638076 19717-19719 12862314 denotes 27
32352026-23202522-47638077 20357-20359 23202522 denotes 30
32352026-32022276-47638078 20790-20791 32022276 denotes 3
32352026-19526193-47638079 21445-21447 19526193 denotes 12
32352026-30822457-47638080 23539-23541 30822457 denotes 41
T68539 1396-1398 31986257 denotes 37
T82365 2220-2222 12690091 denotes 11
T50556 2223-2225 12690092 denotes 21
T16647 2226-2228 12892955 denotes 22
T70354 2291-2292 23678167 denotes 7
T85430 2293-2295 23075143 denotes 40
T7572 2451-2453 32081636 denotes 24
T21593 4908-4910 19261195 denotes 44
T10377 5188-5190 30822457 denotes 41
T68358 5313-5315 18367524 denotes 43
T65408 6352-6353 24167156 denotes 8
T96450 6570-6572 16339739 denotes 38
T69671 7080-7082 22610854 denotes 20
T22954 7669-7671 22581768 denotes 34
T73323 7769-7770 10592235 denotes 4
T91261 8019-8021 15980490 denotes 32
T52774 8605-8607 22437851 denotes 17
T64571 8881-8882 20057044 denotes 6
T95730 9333-9335 12824380 denotes 15
T19277 19717-19719 12862314 denotes 27
T73448 20357-20359 23202522 denotes 30
T8947 20790-20791 32022276 denotes 3
T68988 21445-21447 19526193 denotes 12
T54895 23539-23541 30822457 denotes 41