> top > docs > PMC:7187660 > spans > 504-3058 > annotations

PMC:7187660 / 504-3058 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 67-75 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 168-176 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 179-188 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 406-414 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 704-726 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T8 770-782 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T9 826-834 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T10 878-897 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T11 1048-1056 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1123-1131 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 1963-1975 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T14 2044-2052 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T15 2118-2140 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T16 2205-2224 Disease denotes Respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T17 2287-2293 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T4 109-110 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 236-238 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T6 566-570 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T7 566-570 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T8 618-624 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T9 1307-1310 http://purl.obolibrary.org/obo/CLO_0001414 denotes 548
T10 1382-1384 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T11 1812-1816 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T12 1812-1816 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T13 1889-1895 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T14 2225-2228 http://purl.obolibrary.org/obo/CLO_0001405 denotes 511
T15 2414-2417 http://purl.obolibrary.org/obo/CLO_0001445 denotes 617
T16 2523-2524 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2538-2539 http://purl.obolibrary.org/obo/CLO_0001021 denotes b

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 566-570 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T2 635-637 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T3 728-730 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T4 836-838 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T5 899-901 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T6 954-956 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T7 1228-1230 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T8 2388-2393 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T9 2439-2444 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T10 2474-2479 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 0-102 Sentence denotes The basic characteristics between survivors and non-survivors with COVID-19 were presented in Table 1.
T5 103-272 Sentence denotes Among a total of 44,672 patients with laboratory confirmation of SARS-CoV-2 infection, 1023 (2.3%) patients were dead as of February 11, 2020, the last day of follow-up.
T6 273-387 Sentence denotes The fatality rate was increasing with ages and even up to 14.8% in patients aged above 80 years old (see Fig. 1a).
T7 388-535 Sentence denotes The prevalence of COVID-19 between men and women was pretty close (51.4% vs. 48.6%), which is different from previous report (58.1% vs. 41.9%) [3].
T8 536-690 Sentence denotes Notably, the fatality rate of male patients was significantly higher than that of female patients (RR = 1.67, 95%CI = 1.47–1.89, p < 0.001) (see Fig. 1b).
T9 691-1057 Sentence denotes Furthermore, cardiovascular disease (RR = 6.75, 95%CI = 5.40–8.43, p < 0.001), hypertension (HR = 4.48, 95%CI = 3.69–5.45, p < 0.001), diabetes (RR = 4.43, 95%CI = 3.49–5.61, p < 0.001), respiratory disease (RR = 3.43, 95%CI = 2.42–4.87, p < 0.001), and cancers (RR = 2.926, 95%CI = 1.34–6.41, p = 0.006) were the risk factors for fatality of patients with COVID-19.
T10 1058-1131 Sentence denotes Table 1 Characteristics between survivors and non-survivors with COVID-19
T11 1132-1240 Sentence denotes Characteristics Total (n = 44,672) Non-survivors (n = 1023) Survivors (n = 43,649) Fatality (%) RR (95%CI) p
T12 1241-1251 Sentence denotes Age, n (%)
T13 1252-1281 Sentence denotes  0– 416 (0.9%) 0 416 (0.9%) 0
T14 1282-1321 Sentence denotes  10– 549 (1.2%) 1 (0.1%) 548 (1.3%) 0.2
T15 1322-1363 Sentence denotes  20– 3619 (8.1%) 7 (0.7%) 3612 (8.3%) 0.2
T16 1364-1408 Sentence denotes  30– 7600 (17.0%) 18 (1.8%) 7582 (17.4%) 0.2
T17 1409-1453 Sentence denotes  40– 8571 (19.2%) 38 (3.7%) 8533 (19.5%) 0.4
T18 1454-1502 Sentence denotes  50– 10,008 (22.4%) 130 (12.7%) 9878 (22.6%) 1.3
T19 1503-1549 Sentence denotes  60– 8583 (19.2%) 309 (30.2%) 8274 (19.0%) 3.6
T20 1550-1594 Sentence denotes  70– 3918 (8.8%) 312 (30.5%) 3606 (8.3%) 8.0
T21 1595-1641 Sentence denotes  ≥ 80 1408 (3.2%) 208 (20.3%) 1200 (2.7%) 14.8
T22 1642-1658 Sentence denotes Severity*, n (%)
T23 1659-1707 Sentence denotes  Mild/moderate 36,160 (80.9%) 0 36,160 (82.8%) 0
T24 1708-1745 Sentence denotes  Severe 6168 (13.8%) 0 6168 (14.1%) 0
T25 1746-1796 Sentence denotes  Critical 2087 (4.7%) 1023 (100%) 1064 (2.4%) 49.0
T26 1797-1810 Sentence denotes Gender, n (%)
T27 1811-1887 Sentence denotes  Male 22,981 (51.4%) 653 (63.8%) 22,328 (51.2%) 2.8 1.67 (1.47–1.89) < 0.001
T28 1888-1941 Sentence denotes  Female 21,691 (48.6%) 370 (36.2%) 21,321 (48.8%) 1.7
T29 1942-1961 Sentence denotes Comorbidity#, n (%)
T30 1962-2042 Sentence denotes  Hypertension 2683 (12.8%) 161 (39.7%) 2522 (12.3%) 6.0 4.48 (3.69–5.45) < 0.001
T31 2043-2116 Sentence denotes  Diabetes 1102 (5.3%) 80 (19.7%) 1022 (5.0%) 7.3 4.47 (3.49–5.61) < 0.001
T32 2117-2203 Sentence denotes  Cardiovascular disease 873 (4.2%) 92 (22.7%) 781 (3.8%) 10.5 6.75 (5.40–8.43) < 0.001
T33 2204-2285 Sentence denotes  Respiratory disease 511 (2.4%) 32 (7.9%) 479 (2.3%) 6.3 3.43 (2.42–4.87) < 0.001
T34 2286-2351 Sentence denotes  Cancer 107 (0.5%) 6 (1.5%) 101 (0.5%) 5.6 2.93 (1.34–6.41) 0.006
T35 2352-2394 Sentence denotes *Missing data (n = 257 in survivors group)
T36 2395-2480 Sentence denotes #Missing data (n = 617 in the non-survivors group, n = 23,073 in the survivors group)
T37 2481-2554 Sentence denotes Fig. 1 Fatality rate distribution of age (a) and gender (b). ***p < 0.001

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 704-726 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T2 770-782 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T3 1963-1975 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T4 2118-2140 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T5 2287-2293 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T6 67-75 SP_7 denotes COVID-19
T7 168-178 SP_7 denotes SARS-CoV-2
T8 406-414 SP_7 denotes COVID-19
T9 704-718 UBERON:0004535 denotes cardiovascular
T10 878-889 UBERON:0001004 denotes respiratory
T11 1048-1056 SP_7 denotes COVID-19
T12 1123-1153 SP_7 denotes COVID-19 Characteristics Total
T13 2118-2132 UBERON:0004535 denotes Cardiovascular
T89898 67-75 SP_7 denotes COVID-19
T58247 168-178 SP_7 denotes SARS-CoV-2
T56005 406-414 SP_7 denotes COVID-19
T25359 704-718 UBERON:0004535 denotes cardiovascular
T45386 878-889 UBERON:0001004 denotes respiratory
T24778 1048-1056 SP_7 denotes COVID-19
T56769 1123-1153 SP_7 denotes COVID-19 Characteristics Total
T38161 2118-2132 UBERON:0004535 denotes Cardiovascular

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
17 1963-1975 Disease denotes Hypertension MESH:D006973
18 2044-2052 Disease denotes Diabetes MESH:D003920
19 2118-2140 Disease denotes Cardiovascular disease MESH:D002318
20 2205-2224 Disease denotes Respiratory disease MESH:D012140
21 2287-2293 Disease denotes Cancer MESH:D009369
23 1123-1131 Disease denotes COVID-19 MESH:C000657245
41 127-135 Species denotes patients Tax:9606
42 202-210 Species denotes patients Tax:9606
43 340-348 Species denotes patients Tax:9606
44 423-426 Species denotes men Tax:9606
45 431-436 Species denotes women Tax:9606
46 571-579 Species denotes patients Tax:9606
47 625-633 Species denotes patients Tax:9606
48 1034-1042 Species denotes patients Tax:9606
49 67-75 Disease denotes COVID-19 MESH:C000657245
50 168-188 Disease denotes SARS-CoV-2 infection MESH:C000657245
51 406-414 Disease denotes COVID-19 MESH:C000657245
52 704-726 Disease denotes cardiovascular disease MESH:D002318
53 770-782 Disease denotes hypertension MESH:D006973
54 826-834 Disease denotes diabetes MESH:D003920
55 878-897 Disease denotes respiratory disease MESH:D012140
56 945-952 Disease denotes cancers MESH:D009369
57 1048-1056 Disease denotes COVID-19 MESH:C000657245