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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 3045-3050 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T2 3060-3066 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T3 3244-3248 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T4 5744-5748 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T5 6667-6672 Body_part denotes Heart http://purl.org/sig/ont/fma/fma7088
T6 8862-8865 Body_part denotes leg http://purl.org/sig/ont/fma/fma24979
T7 11761-11766 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T8 11783-11787 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T9 11810-11815 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T10 12601-12606 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T11 12639-12647 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338
T12 12830-12843 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T13 13945-13950 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T14 17642-17657 Body_part denotes coronary artery http://purl.org/sig/ont/fma/fma49893
T15 18597-18602 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T16 18821-18826 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T17 19406-19410 Body_part denotes face http://purl.org/sig/ont/fma/fma24728

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3045-3050 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T2 3060-3066 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T3 3244-3248 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T4 5744-5748 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T5 6667-6672 Body_part denotes Heart http://purl.obolibrary.org/obo/UBERON_0000948
T6 8862-8865 Body_part denotes leg http://purl.obolibrary.org/obo/UBERON_0000978
T7 11761-11766 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 11783-11787 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 11810-11815 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T10 12601-12606 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T11 12830-12843 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T12 13945-13950 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 17642-17657 Body_part denotes coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T14 17651-17657 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T15 18597-18602 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T16 18821-18826 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T17 19406-19410 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 4-12 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 138-185 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T3 138-171 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T4 187-195 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 305-313 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 550-574 Disease denotes COronaVIrus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T7 576-584 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 830-838 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 925-933 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1310-1318 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1902-1911 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T12 2611-2619 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 2726-2734 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2834-2842 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 2945-2953 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 3045-3058 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T17 3060-3074 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T19 3085-3097 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T20 3244-3256 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T21 3713-3721 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 3815-3823 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 3883-3891 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 3916-3924 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 4533-4541 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 4646-4654 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 4937-4945 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 5504-5512 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 5735-5743 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 5749-5758 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 5860-5875 Disease denotes cardiac disease http://purl.obolibrary.org/obo/MONDO_0005267
T32 5975-5983 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 5997-6005 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 6282-6290 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 6291-6300 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 6442-6450 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 6720-6736 Disease denotes coronary disease http://purl.obolibrary.org/obo/MONDO_0005010
T38 6771-6786 Disease denotes aortic stenosis http://purl.obolibrary.org/obo/MONDO_0004978|http://purl.obolibrary.org/obo/MONDO_0042981
T40 6909-6917 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 7351-7359 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 8127-8135 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 8259-8267 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 8649-8657 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 8780-8785 Disease denotes wound http://purl.obolibrary.org/obo/MONDO_0021178
T46 8866-8875 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T47 8952-8957 Disease denotes wound http://purl.obolibrary.org/obo/MONDO_0021178
T48 9060-9065 Disease denotes wound http://purl.obolibrary.org/obo/MONDO_0021178
T49 9205-9210 Disease denotes wound http://purl.obolibrary.org/obo/MONDO_0021178
T50 9540-9545 Disease denotes wound http://purl.obolibrary.org/obo/MONDO_0021178
T51 9621-9626 Disease denotes wound http://purl.obolibrary.org/obo/MONDO_0021178
T52 9660-9667 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T53 10508-10516 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T54 10644-10659 Disease denotes cardiac disease http://purl.obolibrary.org/obo/MONDO_0005267
T55 10977-10986 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T56 11043-11051 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T57 11161-11169 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 12148-12156 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 12157-12166 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T60 12177-12196 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T61 12284-12292 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 12293-12302 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T63 12349-12361 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T64 12363-12371 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T65 12376-12398 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T66 12434-12440 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T67 12461-12469 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 12557-12565 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 12651-12665 Disease denotes cardiac arrest http://purl.obolibrary.org/obo/MONDO_0000745
T70 12722-12730 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T71 12830-12853 Disease denotes immune system disorders http://purl.obolibrary.org/obo/MONDO_0005046
T72 12927-12946 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T73 13340-13348 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T74 13419-13427 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 13894-13902 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T76 14133-14141 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 17544-17552 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T78 17566-17575 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T79 17975-17983 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 18007-18026 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T81 18035-18043 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T82 18132-18140 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T83 18860-18868 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T84 19126-19134 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T85 20028-20036 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 20200-20208 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 20647-20655 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 615-617 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T2 864-865 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 1080-1083 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 1199-1202 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 1429-1439 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T6 1792-1793 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 2003-2006 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 2046-2054 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T9 2133-2136 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 2500-2501 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2663-2664 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T12 3045-3050 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T13 3045-3050 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T14 3045-3050 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T15 3045-3050 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T16 3060-3066 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T17 3060-3066 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T18 3060-3066 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T19 3076-3084 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T20 3076-3084 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T21 3244-3248 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T22 3244-3248 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T23 3348-3360 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized in
T24 3537-3538 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T25 3579-3580 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T26 3789-3790 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 4151-4163 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized in
T28 4169-4170 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 4341-4342 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T30 4586-4593 http://purl.obolibrary.org/obo/OBI_0000968 denotes devices
T31 4637-4638 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 4659-4660 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T33 4743-4744 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T34 4787-4788 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 4992-4993 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T36 5331-5332 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 5425-5426 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 5478-5479 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 5572-5573 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 5733-5734 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 5744-5748 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T42 5744-5748 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T43 5831-5832 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 6094-6095 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 6139-6140 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 6280-6281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 6523-6524 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 6667-6672 http://purl.obolibrary.org/obo/UBERON_0000948 denotes Heart
T49 6667-6672 http://purl.obolibrary.org/obo/UBERON_0007100 denotes Heart
T50 6667-6672 http://purl.obolibrary.org/obo/UBERON_0015228 denotes Heart
T51 6667-6672 http://www.ebi.ac.uk/efo/EFO_0000815 denotes Heart
T52 6771-6777 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T53 6872-6877 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T54 7078-7086 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T55 7098-7099 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 7241-7253 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T57 7373-7374 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 7529-7530 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 7710-7711 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 7823-7829 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T61 8062-8063 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 8181-8184 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T63 8198-8199 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 8430-8431 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 8862-8865 http://www.ebi.ac.uk/efo/EFO_0001411 denotes leg
T66 9321-9330 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T67 9757-9758 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 9901-9902 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 10073-10076 http://purl.obolibrary.org/obo/CLO_0001755 denotes ask
T70 10358-10359 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 10584-10585 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 10825-10826 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 11229-11239 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T74 11325-11326 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 11761-11766 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T76 11783-11787 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T77 11783-11787 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T78 11810-11815 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T79 11810-11815 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T80 11922-11928 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T81 12018-12026 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T82 12018-12026 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T83 12146-12147 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 12499-12501 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T85 12601-12606 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T86 12601-12606 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T87 12601-12606 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T88 12601-12606 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T89 12830-12843 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T90 13298-13306 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T91 13383-13386 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T92 13503-13508 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T93 13790-13802 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T94 13945-13950 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T95 13972-13973 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 14087-14089 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T97 14253-14260 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T98 14299-14304 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T99 14429-14430 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 14876-14887 http://purl.obolibrary.org/obo/BFO_0000030 denotes objectivity
T101 15691-15694 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T102 15830-15833 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T103 15912-15913 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 16130-16131 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 16195-16196 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 16368-16369 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 16451-16452 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 16492-16493 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 16525-16526 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T110 16860-16863 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T111 16916-16917 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 16967-16972 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T113 17152-17153 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 17232-17233 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 17418-17419 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T116 17470-17471 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 17491-17496 http://purl.obolibrary.org/obo/UBERON_0001456 denotes faced
T118 17609-17610 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 17651-17657 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T120 17651-17657 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T121 17760-17769 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized
T122 17775-17776 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 17809-17812 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T124 17867-17870 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T125 17897-17905 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T126 18120-18121 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 18316-18317 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 18597-18602 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T129 18597-18602 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T130 18597-18602 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T131 18597-18602 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T132 18632-18637 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T133 18819-18820 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 18821-18826 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T135 18821-18826 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T136 18821-18826 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T137 18821-18826 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T138 18894-18895 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 19057-19058 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 19347-19350 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T141 19406-19410 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T142 19728-19731 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T143 19732-19733 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 20130-20131 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T145 20674-20675 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 20714-20715 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T147 20752-20753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T148 20828-20829 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 20868-20869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 21254-21255 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 3111-3115 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T2 5252-5259 Chemical denotes carrier http://purl.obolibrary.org/obo/CHEBI_78059
T3 5395-5399 Chemical denotes Gold http://purl.obolibrary.org/obo/CHEBI_29287
T4 6690-6692 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T5 8894-8905 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T6 9019-9030 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 8958-8968 http://purl.obolibrary.org/obo/GO_0009900 denotes dehiscence
T2 12804-12825 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-88 Sentence denotes The COVID-19 outbreak and its impact on hospitals in Italy: the model of cardiac surgery
T2 90-102 Sentence denotes INTRODUCTION
T3 103-329 Sentence denotes The number of people infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) worldwide is increasing dramatically [1], and reports from China, Iran, Italy and other areas hit hard by SARS-CoV-2 are chilling.
T4 330-469 Sentence denotes The metropolitan area of Milan and its surrounding region of the Lombardy are one of the worst affected in Italy, and Europe at the moment.
T5 470-677 Sentence denotes As of 29 March 2020, there have been 97 689 cases with 10 779 fatalities due to COronaVIrus Disease 2019 (COVID-19) in whole of Italy; of these, 41 007 (6360 fatalities) have occurred in Lombardy region [2].
T6 678-896 Sentence denotes In order to slow down viral transmission, local authorities and the Italian government have imposed strong containment measures by quarantining initial COVID-19 clusters and followed by a complete nationwide lock-down.
T7 897-1168 Sentence denotes The exponential increase in COVID-19-positive patients and the dramatically increasing need for intensive care unit (ICU) surge capacity for the management of critically ill patients has led the emergency task force of the Lombardy region to reallocate ICU resources [3].
T8 1169-1328 Sentence denotes In addition, elective surgery has been cancelled and beds dedicated to cardiac, neurosurgery and partially coronary care units reassigned to COVID-19-patients.
T9 1329-1525 Sentence denotes For this reason, 16 of the 20 cardiac surgical units in the Lombardy region have discontinued their activities, with the remaining 4 units forming ‘the hub’ for the 16 other closed units (spokes).
T10 1526-1675 Sentence denotes In this hub-and-spoke system, all urgent and emergency cases are sent to these 4 units, including those that cannot be delayed for more than 60 days.
T11 1676-1794 Sentence denotes Moreover, beds for critically ill patients are also obtained from the reconversion of operation and recovery rooms (A.
T12 1795-1829 Sentence denotes Parolari, personal communication).
T13 1830-2127 Sentence denotes At the same time, the progressively increasing numbers of patients with pneumonia who need ICU treatment have severely strained the ICU system in the Lombardy region and it has become clear that the current level of activity may not be sustainable for long, even with an increase in ICU resources.
T14 2128-2475 Sentence denotes This has led SIAARTI, the scientific society of anaesthesia and intensive care of Italy, to issue guidelines on patient selection criteria for admission to the ICU, in case of an expected shortage of resources, such as ventilators or ICU beds [4], based on the Consensus Statement for the care of the critically ill during pandemics and disasters.
T15 2476-2595 Sentence denotes It is obvious that such a dramatic scenario poses many new questions and challenges, which are discussed in this paper.
T16 2597-2662 Sentence denotes How to manage COVID-19-positive patients who need cardiac surgery
T17 2663-2849 Sentence denotes A modification of traditional workflow is mandatory during the COVID-19 outbreak, beginning with the assumption that asymptomatic persons may also be potential sources of SARS-CoV-2 [5].
T18 2850-3124 Sentence denotes Patients who need cardiac surgery are likely to be more susceptible to severe complications of COVID-19, as they are more likely to have pre-existing comorbidities such as pulmonary dysfunction, heart failure, kidney disease, arterial hypertension and multiple drug therapy.
T19 3125-3257 Sentence denotes Moreover, cardiopulmonary bypass and the need of invasive mechanical ventilation can represent predisposing factors to lung disease.
T20 3258-3536 Sentence denotes According to guidelines from the Lombardy Region [6], cardiac surgery hospitals have been organized in ‘Hub Centres’ for cardiovascular patients and ‘Spoke Centres’ that are satellites for enrolment of patients, to ensure medical and surgical treatment that cannot be postponed.
T21 3537-3578 Sentence denotes A designated Hub Hospital must guarantee:
T22 3579-3644 Sentence denotes A dedicated room in the emergency department to receive patients.
T23 3645-3782 Sentence denotes All patients coming to the emergency room (ER) should be treated as COVID-19-positive, and contact with other patients should be avoided.
T24 3783-3925 Sentence denotes After a definitive diagnosis of COVID-19, it is critical to have 2 different paths for patient with COVID-19 and for patient without COVID-19.
T25 3926-4076 Sentence denotes The coordination of 4 or 5 Cardiac Surgical Centres (Spokes), linked to their Hub Centre, creating cooperation with colleagues from the Spoke Centres.
T26 4077-4119 Sentence denotes Available surgical teams should be shared.
T27 4120-4340 Sentence denotes We can suggest that shifts are organized in such a way that surgeons and perfusionists from different centres take turns being on call, in order to enhance cooperation, and also the inclusion of nurses and perfusionists.
T28 4341-4448 Sentence denotes A full-time (24-h/7-day) on-call team comprising hub-and-spoke surgeons, also including on-duty physicians.
T29 4449-4658 Sentence denotes The Hub Centre therefore should create at least 1 dedicated operating room (OR) for COVID-19-positive patients, with approved protective devices for healthcare personnel and, if possible, a second COVID-19 OR.
T30 4659-4742 Sentence denotes A specific protocol using aerosoling systems should be adopted for cleaning the OR.
T31 4743-4901 Sentence denotes A patient with an urgent status must follow a strict pathway during his whole hospital stay [ER, OR, ICU, the ward and ultimately the rehabilitation centres).
T32 4902-4991 Sentence denotes It is critical to quickly diagnose COVID-19-positive patients who need emergency surgery.
T33 4992-5088 Sentence denotes A detailed anamnesis is essential, with attention paid to recent respiratory symptoms and fever.
T34 5089-5260 Sentence denotes Nevertheless, this may be impossible either because of the clinical state of the patient (comatose state, deep pain) or because the patient may be an asymptomatic carrier.
T35 5261-5374 Sentence denotes The nasal swab should be performed as soon as possible, preferably in a Spoke Centre where patients are enrolled.
T36 5375-5556 Sentence denotes In the future, the ‘Gold Standard’ will likely be a nasal swab in the Hub Centre in order to guarantee a definitive diagnosis of COVID-19 before the transfer from the OR to the ICU.
T37 5557-5759 Sentence denotes We advise that a computed tomography (CT) scan is performed for every patient who is being evaluated for non-elective surgery, which is the most sensitive tool for recognizing a COVID-19 lung infection.
T38 5760-5898 Sentence denotes Most patients undergoing urgent cardiac surgery are already in need of a preoperative assessment of cardiac disease with thoracic CT scan.
T39 5899-6024 Sentence denotes ICU and the surgery ward must have separated spaces and dedicated teams for COVID-19-positive and COVID-19-negative patients.
T40 6025-6067 Sentence denotes This also applies for postoperative wards.
T41 6068-6191 Sentence denotes Moreover, the creation of a network for home rehabilitation, including a Tele-Cardiology system is recommended if possible.
T42 6192-6301 Sentence denotes During the hospital stay, it is mandatory to strictly monitor any symptoms and signs of a COVID-19 infection.
T43 6302-6371 Sentence denotes Extraordinary measures should be adopted to protect healthcare staff.
T44 6372-6497 Sentence denotes Surgeons could work in 10–14 day shifts, in order to self-monitor for COVID-19 symptoms during their leave from the hospital.
T45 6498-6787 Sentence denotes We also recommend, after a trial period of only treating surgical emergencies, performing surgery that cannot be delayed, such as on very symptomatic patients (New York Heart Association IIIb–IV) with diseases like severe coronary disease (mainly left main) or symptomatic aortic stenosis.
T46 6789-6826 Sentence denotes Cardiac surgeons in ‘spoke’ hospitals
T47 6827-7192 Sentence denotes As previously mentioned, the reallocation of human resources to the management of COVID-19 in ‘Spoke’ hospitals have led many cardiac surgeons, as well as many other colleagues, to abruptly change their daily professional life, from surgical-oriented activity to take on a new, completely undefined role, which is completely unpredictable and deserves some mention.
T48 7194-7232 Sentence denotes Management of chronically ill patients
T49 7233-7384 Sentence denotes This re-organization occurred abruptly, and many cardiac surgery units and cardiac ICU were requested to convert into COVID-19 units within a few days.
T50 7385-7504 Sentence denotes However during this transitional phase, patients recovering from an operation in the hospital should be safely managed.
T51 7505-7681 Sentence denotes Moreover, patients with a regular postoperative course should be discharged as quickly as possible and managed with out-patient care as soon as their physical condition allows.
T52 7682-8008 Sentence denotes However, some patients with a complicated postoperative course requiring prolonged ICU hospitalization, on different modes of support [intra aortic balloon pump (IABP), continuous veno-venous hemofiltration (CVVH), tracheostomy, percutaneous endoscopic gastrostomy] are neither dischargeable nor transferrable into other ICUs.
T53 8009-8138 Sentence denotes It should be noted that these kinds of patients have a very dismal prognosis, should they ultimately be infected with SARS-CoV-2.
T54 8139-8382 Sentence denotes Consequently, it is reasonable to reserve 3–4 ICU beds, in a separate area of the hospital without any contact with the COVID-19 zone, which is dedicated to the management of chronically ill patients, already in hospital before the quarantine.
T55 8383-8589 Sentence denotes Some OR facilities, that are shut down in such a situation, could be dedicated to this ‘Chronic ICU’, and progressively converted to available ICU beds when chronically ill cardiac patients recover, or die.
T56 8590-8770 Sentence denotes As the vast majority of anaesthesiologists are involved in COVID-19 patients, cardiac surgeons should be involved in ward and chronic ICU management during this transitional phase.
T57 8772-8796 Sentence denotes Chronic wound management
T58 8797-8906 Sentence denotes Some patients are hospitalized for moderate to severe sternal or leg infection under intravenous antibiotics.
T59 8907-9133 Sentence denotes These patients, according to the severity of wound dehiscence and sternal stability, should be switched to oral antibiotics and managed with long-acting wound therapy (such as vacuum-assisted therapy) at home, if possible [7].
T60 9134-9287 Sentence denotes It is also possible that recently discharged patients develop moderate wound problems, such that they could require outpatient evaluation and medication.
T61 9288-9385 Sentence denotes During quarantine, movements are extremely limited, so outpatient evaluation can become an issue.
T62 9386-9520 Sentence denotes Cardiac surgeons should follow-up with these patients via telephone interview and photographic assessment (via email or mobile phone).
T63 9521-9677 Sentence denotes Patients with mild wound problems should be encouraged to stay at home and provide self-care of the wound with simple betadine rinsing and sterile dressing.
T64 9678-9829 Sentence denotes Only more severe cases should be evaluated in the hospital, if possible within a dedicated pathway in order to minimize any risk of viral transmission.
T65 9831-9881 Sentence denotes Providing correct information to elective patients
T66 9882-10014 Sentence denotes Quarantine carries a dramatic psychological burden, and physicians are required to manage this aspect as well as the medical issues.
T67 10015-10143 Sentence denotes Many patients may call their referring cardiac surgeon to ask about their postoperative course or their preoperative evaluation.
T68 10144-10263 Sentence denotes The postoperative evaluation after rehabilitation or discharge should be avoided, unless certain critical issues exist.
T69 10264-10421 Sentence denotes Cardiac surgeon could evaluate the most recent exams by mail, and reassure the patient, after a phone interview, that his postoperative course is uneventful.
T70 10422-10526 Sentence denotes Furthermore, the surgeon should re-evaluate patients scheduled for surgery before the COVID-19 outbreak.
T71 10527-10607 Sentence denotes Patients in need of urgent surgery should be referred to a cardiac hub hospital.
T72 10608-10783 Sentence denotes Operations for patients with stable cardiac disease should be postponed and cardiac surgeon should reassure his patients that they are not taking any risk in delaying surgery.
T73 10784-11004 Sentence denotes In this phase, it is important that only a minority of patients (and only those with severe issues) have an outpatient clinic evaluation inside the hospital, in order to avoid possible further infection or contamination.
T74 11006-11060 Sentence denotes Supporting medical staff in managing COVID-19 patients
T75 11061-11300 Sentence denotes As the number of infected patients increases exponentially, and more hospital beds are dedicated to COVID-19 patients, all available physicians (exempted from elective activities) and resources should be involved in managing the emergency.
T76 11301-11461 Sentence denotes It should be noted that a certain number of exposed physicians will become infected, such that the global healthcare system progressively can become inadequate.
T77 11462-11661 Sentence denotes As anaesthesiologists, pneumologists and intensivists are the front-line in managing these patients, cardiologists and cardiac surgeons can contribute more than other specialties for several reasons.
T78 11662-11729 Sentence denotes First, in many centres, surgeons are used to managing ICU patients.
T79 11730-11882 Sentence denotes Secondly, surgeons are used to chest imaging (X-ray, lung echo and CT scan), to blood gas analysis and to circulatory evaluation and support, if needed.
T80 11883-12094 Sentence denotes Even if they might not be so versed in airway management (including intubation and tracheostomy), they are able to obtain percutaneous arterial and venous access, that are useful both for monitoring and support.
T81 12095-12266 Sentence denotes Finally, although the most dramatic consequence of a COVID-19 infection is severe respiratory failure, there is some evidence of acute and chronic cardiac involvement [8].
T82 12267-12399 Sentence denotes In patients with COVID-19 infection and severe symptoms, up to 30% presented with hypertension, diabetes and cardiovascular disease.
T83 12400-12693 Sentence denotes Furthermore, in Wuhan, myocardial injury associated with the SARS-CoV-2 occurred in 5 of the first 41 patients diagnosed, and among the people who died from COVID-19, 11.8% of patients had substantial heart damage, with elevated levels of troponin or cardiac arrest during hospitalization [9].
T84 12694-12963 Sentence denotes Therefore, in patients with COVID-19, the incidence of cardiovascular symptoms is high, owing to the systemic inflammatory response and immune system disorders arising during disease progression, and can be significantly worsened by respiratory failure-related hypoxia.
T85 12964-13146 Sentence denotes From this viewpoint, cardiac management of these patients (including fluid management and inotropes) requires skills that commonly belong to members of the cardiac surgery community.
T86 13147-13270 Sentence denotes The last aspect in which cardiac surgeon can significantly contribute to is mechanical respiratory and circulatory support.
T87 13271-13379 Sentence denotes The role of extracorporeal membrane oxygenation in the management of COVID-19 is unclear at this point [10].
T88 13380-13477 Sentence denotes It has been used in some patients with COVID-19 in China but detailed information is unavailable.
T89 13478-13654 Sentence denotes Moreover, much about the virus is unknown, including the natural history, incidence of late complications, viral persistence and the prognoses in different subsets of patients.
T90 13655-13870 Sentence denotes To address this, prompt mobilization of existing registries and clinical research groups (for example, the Extracorporeal Life Support Organization Registry) should help facilitate the systematic collection of data.
T91 13872-13911 Sentence denotes Ethical issues in the COVID-19 pandemic
T92 13912-14091 Sentence denotes In 2014, the American College of Chest Physicians published a Consensus Statement reporting on ethical considerations in the care of critically ill patients during pandemics [11].
T93 14092-14185 Sentence denotes Pandemics, such as the one caused by the COVID-19 spread, jeopardize ethical decision-making.
T94 14186-14403 Sentence denotes Hence, planning for the management of pandemics should not be only focused on approaches to reduce the spread of virus or to treat ill patients, but should also provide ethical guidance to set some ethical boundaries.
T95 14404-14566 Sentence denotes We would like to suggest a few: pandemic policies should reflect the broad consensus that there is no ethical difference between withholding and withdrawing care;
T96 14567-14761 Sentence denotes critical care resources should be allocated based on specific triage criteria, irrespective of whether the need for resources is related to the current pandemic or an unrelated critical illness;
T97 14762-14956 Sentence denotes it should be ethically permissible to use exclusion criteria for critical care resources, since the advantages of objectivity, equity and transparency generally outweigh potential disadvantages;
T98 14957-15119 Sentence denotes policies permitting the withdrawal of critical care treatment to reallocate to someone else based on higher likelihood of benefit should be ethically permissible;
T99 15120-15288 Sentence denotes specific groups of people, such as healthcare workers, should not receive exclusive access to scarce critical care resources when crisis standards of care are in place;
T100 15289-15412 Sentence denotes hospitals should make plans to assist with moral distress in healthcare providers involved in providing mass critical care;
T101 15413-15673 Sentence denotes critical care clinicians who are unable to accept implementation of crisis standards of care should be transferred into support or non-clinical roles during disaster response, if possible, but not be absolved of their obligation to participate in the response;
T102 15674-15817 Sentence denotes hospitals should aim to protect their workers and encourage healthcare providers/workers to create personal/family disaster preparedness plans.
T103 15818-16173 Sentence denotes The point 4 has been recently addressed by the Italian Society of Intensive Care (SIIARTI) in a document published online in March 2020 [4], in which the Scientific Society presented clinical ethical recommendations for the admission to ICUs, under the exceptional circumstances of an imbalance between needs of a population and availability of resources.
T104 16174-16310 Sentence denotes The Authors examined a scenario in which criteria for admission to the ICU may be solely based on the principle of distributive justice.
T105 16311-16524 Sentence denotes Hence, the ethical principle guiding the intensivists in a resource-limited healthcare system should be to allocate resources to those with a greater life expectancy rather than on a first-come, first-serve basis.
T106 16525-16624 Sentence denotes A second approach could be giving priority to those who are sickest and therefore in greatest need.
T107 16625-16790 Sentence denotes During the system of triage established in the Napoleonic army, for instance, soldiers who were ‘dangerously wounded’ received care before the less severely wounded.
T108 16791-16826 Sentence denotes The dying were left untreated [12].
T109 16827-17030 Sentence denotes Luckily, at present in Italy, it has not been necessary to apply this concept, thanks to a relevant increase in the intensive care beds and human resources put in place by the national healthcare system.
T110 17031-17163 Sentence denotes Another ethical concern revolves around the need to carry on with surgery, in our cases with cardiac surgery, in case of a pandemic.
T111 17164-17296 Sentence denotes As we have already reported, one of the main issue in the course of a pandemic is the possible shortage of ICU beds and ventilators.
T112 17297-17386 Sentence denotes In this scenario, it is surely necessary to cancel elective, but not emergency surgeries.
T113 17387-17674 Sentence denotes Let us suppose for the sake of a dramatic example that we only have 1 ICU bed with a ventilator and are faced with 2 patients, one of whom is suffering from COVID-19 interstitial pneumonia needing assisted ventilation and a younger one, needing emergency coronary artery bypass grafting.
T114 17675-17720 Sentence denotes The decision-making then becomes complicated.
T115 17721-17798 Sentence denotes In this view, the hospitals need to be organized into a hub-and-spoke system.
T116 17799-17906 Sentence denotes The ‘Hub’ has to carry on with cardiac surgery, whereas the ‘spoke’ has to temporarily stop their activity.
T117 17907-18096 Sentence denotes Moreover, even hub hospitals have to provide 2 different routes for COVID-19-positive patients with respiratory failure and for COVID-19-negative patients needing emergency cardiac surgery.
T118 18097-18195 Sentence denotes Finally, there will be a subset of COVID-19-positive patients requiring emergency cardiac surgery.
T119 18196-18582 Sentence denotes In this case, there is an ethical commitment to provide these patients with cardiac surgery, but reduce OR personnel to a required minimum, pre-determining requirements for enhanced personal protection, and assessing all the team adopted protective measures for themselves, and assessing adequacy of post-procedural sterilization as suggested by the American College of Cardiology [13].
T120 18583-18802 Sentence denotes The advent of heart team, mimicking teams in the field of oncology, is becoming more and more useful in choosing the right approach for the right patient, given the overlap of transcatheter and surgical approaches [14].
T121 18803-18869 Sentence denotes We believe that a heart team is imperative in the era of COVID-19.
T122 18870-19093 Sentence denotes In fact, in cases where a transcatheter approach can be employed for the patients, without the need of ICU bed and ventilator, the balance between risks and benefits must be evaluated by a team rather than by an individual.
T123 19095-19106 Sentence denotes CONCLUSIONS
T124 19107-19250 Sentence denotes The fast spreading COVID-19 pandemic poses new questions, challenges and opportunities for the healthcare systems of every nation in the world.
T125 19251-19341 Sentence denotes In fact, Italy is country with the second highest number of confirmed cases after the USA.
T126 19342-19536 Sentence denotes This has led the healthcare system, both public and private, to face an unprecedented challenge to meet the needs of people becoming infected and eventually needing hospitalization and ICU care.
T127 19537-19839 Sentence denotes We have described the model that is being implemented at the moment in the Lombardy region, the region with (as of 29 March 2020) 42% of cases and 59% of fatalities (of note, Lombardy region has a population of 10.04 million, which accounts for ∼16.6% of the total Italian population of 60.48 million).
T128 19840-20259 Sentence denotes This model foresees an hub-and-spoke model, but it is possible that, in the near future, different models may be adopted by other regions; at the moment Veneto, another region hard hit by COVID-19, is considering concentrating all its cardiac surgical cases that are COVID-negative in only a single hospital and reassigning all other units to the treatment of COVID-19 patients until the end of the emergency status (G.
T129 20260-20292 Sentence denotes Gerosa, personal communication).
T130 20293-20543 Sentence denotes Whatever the strategy adopted, it is still unknown how this will impact the future needs of elective cardiac surgical procedures as well as of other procedures (e.g. neurosurgery) which cannot be performed with an inadequate availability of ICU beds.
T131 20545-20561 Sentence denotes ACKNOWLEDGEMENTS
T132 20562-20665 Sentence denotes All the authors are members of the Italian Society for Cardiac Surgery Task Force on COVID-19 Pandemic.
T133 20666-20741 Sentence denotes G.B. is a consultant cardiac surgeon working on a ‘Hub’ Centre of Lombardy.
T134 20742-20819 Sentence denotes M.d.M. is a member of the Council of the Italian Society for Cardiac Surgery.
T135 20820-20897 Sentence denotes A.G. is a consultant cardiac surgeon working on a ‘Spoke’ Centre of Lombardy.
T136 20898-21023 Sentence denotes F.B. is currently serving as Executive Vice-President of the Scientific Committee of the Italian Society for Cardiac Surgery.
T137 21024-21106 Sentence denotes G.G. is currently serving as President of the Italian Society for Cardiac Surgery.
T138 21107-21283 Sentence denotes A.P. is currently serving as Scientific Secretary and President of the Scientific Committee of the Italian Society for Cardiac Surgery, working on a ‘Spoke’ Centre of Lombardy.
T139 21284-21320 Sentence denotes Conflict of interest: none declared.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1902-1911 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 3045-3058 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635
T3 3060-3074 Phenotype denotes kidney disease http://purl.obolibrary.org/obo/HP_0000112
T4 3085-3097 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T5 3244-3256 Phenotype denotes lung disease http://purl.obolibrary.org/obo/HP_0002088
T6 5082-5087 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T7 5200-5204 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T8 6720-6736 Phenotype denotes coronary disease http://purl.obolibrary.org/obo/HP_0001677
T9 6771-6786 Phenotype denotes aortic stenosis http://purl.obolibrary.org/obo/HP_0001650
T10 12177-12196 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T11 12349-12361 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T12 12376-12398 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T13 12651-12665 Phenotype denotes cardiac arrest http://purl.obolibrary.org/obo/HP_0001695
T14 12927-12946 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T15 12955-12962 Phenotype denotes hypoxia http://purl.obolibrary.org/obo/HP_0012418
T16 17566-17575 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 18007-18026 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T18 18641-18649 Phenotype denotes oncology http://purl.obolibrary.org/obo/HP_0002664

0_colil

Id Subject Object Predicate Lexical cue
32301984-32003551-5684 2846-2847 32003551 denotes 5
32301984-31986264-5685 12690-12691 31986264 denotes 9
32301984-25144262-5686 14087-14089 25144262 denotes 11
32301984-26573360-5687 18798-18800 26573360 denotes 14

TEST0

Id Subject Object Predicate Lexical cue
32301984-183-188-5684 2846-2847 ["32003551"] denotes 5
32301984-238-243-5685 12690-12691 ["31986264"] denotes 9
32301984-175-181-5686 14087-14089 ["25144262"] denotes 11
32301984-215-221-5687 18798-18800 ["26573360"] denotes 14

2_test

Id Subject Object Predicate Lexical cue
32301984-32003551-28904063 2846-2847 32003551 denotes 5
32301984-31986264-28904064 12690-12691 31986264 denotes 9
32301984-25144262-28904065 14087-14089 25144262 denotes 11
32301984-26573360-28904066 18798-18800 26573360 denotes 14

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 4-12 Disease denotes COVID-19 MESH:C000657245
20 1534-1537 Gene denotes hub Gene:1993
21 1481-1484 Gene denotes hub Gene:1993
22 117-123 Species denotes people Tax:9606
23 138-185 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
24 187-197 Species denotes SARS-CoV-2 Tax:2697049
25 305-315 Species denotes SARS-CoV-2 Tax:2697049
26 943-951 Species denotes patients Tax:9606
27 1071-1079 Species denotes patients Tax:9606
28 1319-1327 Species denotes patients Tax:9606
29 1710-1718 Species denotes patients Tax:9606
30 124-132 Disease denotes infected MESH:D007239
31 550-574 Disease denotes COronaVIrus Disease 2019 MESH:C000657245
32 576-584 Disease denotes COVID-19 MESH:C000657245
33 830-838 Disease denotes COVID-19 MESH:C000657245
34 925-933 Disease denotes COVID-19 MESH:C000657245
35 1056-1070 Disease denotes critically ill MESH:D016638
36 1310-1318 Disease denotes COVID-19 MESH:C000657245
37 1695-1709 Disease denotes critically ill MESH:D016638
42 1888-1896 Species denotes patients Tax:9606
43 2240-2247 Species denotes patient Tax:9606
44 1902-1911 Disease denotes pneumonia MESH:D011014
45 2429-2443 Disease denotes critically ill MESH:D016638
48 2629-2637 Species denotes patients Tax:9606
49 2611-2619 Disease denotes COVID-19 MESH:C000657245
60 2793-2800 Species denotes persons Tax:9606
61 2834-2844 Species denotes SARS-CoV-2 Tax:2697049
62 2850-2858 Species denotes Patients Tax:9606
63 2726-2734 Disease denotes COVID-19 MESH:C000657245
64 2945-2953 Disease denotes COVID-19 MESH:C000657245
65 3022-3043 Disease denotes pulmonary dysfunction MESH:D011660
66 3045-3058 Disease denotes heart failure MESH:D006333
67 3060-3074 Disease denotes kidney disease MESH:D007674
68 3076-3097 Disease denotes arterial hypertension MESH:D000081029
69 3244-3256 Disease denotes lung disease MESH:D008171
74 3362-3365 Gene denotes Hub Gene:1993
75 3394-3402 Species denotes patients Tax:9606
76 3432-3442 Species denotes satellites Tax:12877
77 3460-3468 Species denotes patients Tax:9606
87 3635-3643 Species denotes patients Tax:9606
88 3649-3657 Species denotes patients Tax:9606
89 3755-3763 Species denotes patients Tax:9606
90 3870-3877 Species denotes patient Tax:9606
91 3900-3907 Species denotes patient Tax:9606
92 3713-3721 Disease denotes COVID-19 MESH:C000657245
93 3815-3823 Disease denotes COVID-19 MESH:C000657245
94 3883-3891 Disease denotes COVID-19 MESH:C000657245
95 3916-3924 Disease denotes COVID-19 MESH:C000657245
97 4004-4007 Gene denotes Hub Gene:1993
99 4390-4393 Gene denotes hub Gene:1993
101 3550-3553 Gene denotes Hub Gene:1993
107 4453-4456 Gene denotes Hub Gene:1993
108 4551-4559 Species denotes patients Tax:9606
109 4745-4752 Species denotes patient Tax:9606
110 4533-4541 Disease denotes COVID-19 MESH:C000657245
111 4646-4654 Disease denotes COVID-19 MESH:C000657245
119 4955-4963 Species denotes patients Tax:9606
120 5170-5177 Species denotes patient Tax:9606
121 5221-5228 Species denotes patient Tax:9606
122 4937-4945 Disease denotes COVID-19 MESH:C000657245
123 5057-5077 Disease denotes respiratory symptoms MESH:D012818
124 5082-5087 Disease denotes fever MESH:D005334
125 5195-5204 Disease denotes deep pain MESH:D010146
129 5445-5448 Gene denotes Hub Gene:1993
130 5352-5360 Species denotes patients Tax:9606
131 5504-5512 Disease denotes COVID-19 MESH:C000657245
137 5627-5634 Species denotes patient Tax:9606
138 5765-5773 Species denotes patients Tax:9606
139 5735-5743 Disease denotes COVID-19 MESH:C000657245
140 5744-5758 Disease denotes lung infection MESH:D012141
141 5860-5875 Disease denotes cardiac disease MESH:D006331
145 6015-6023 Species denotes patients Tax:9606
146 5975-5983 Disease denotes COVID-19 MESH:C000657245
147 5997-6005 Disease denotes COVID-19 MESH:C000657245
150 6282-6290 Disease denotes COVID-19 MESH:C000657245
151 6291-6300 Disease denotes infection MESH:D007239
153 6442-6450 Disease denotes COVID-19 MESH:C000657245
157 6648-6656 Species denotes patients Tax:9606
158 6720-6736 Disease denotes coronary disease MESH:D003324
159 6771-6786 Disease denotes aortic stenosis MESH:D001024
162 6872-6877 Species denotes human Tax:9606
163 6909-6917 Disease denotes COVID-19 MESH:C000657245
178 7425-7433 Species denotes patients Tax:9606
179 7515-7523 Species denotes patients Tax:9606
180 7625-7632 Species denotes patient Tax:9606
181 7696-7704 Species denotes patients Tax:9606
182 8048-8056 Species denotes patients Tax:9606
183 8127-8137 Species denotes SARS-CoV-2 Tax:2697049
184 8330-8338 Species denotes patients Tax:9606
185 8564-8572 Species denotes patients Tax:9606
186 8658-8666 Species denotes patients Tax:9606
187 7351-7359 Disease denotes COVID-19 MESH:C000657245
188 7817-7842 Disease denotes intra aortic balloon pump MESH:D054549
189 8113-8121 Disease denotes infected MESH:D007239
190 8259-8267 Disease denotes COVID-19 MESH:C000657245
191 8649-8657 Disease denotes COVID-19 MESH:C000657245
201 8802-8810 Species denotes patients Tax:9606
202 8913-8921 Species denotes patients Tax:9606
203 9179-9187 Species denotes patients Tax:9606
204 9250-9260 Species denotes outpatient Tax:9606
205 9343-9353 Species denotes outpatient Tax:9606
206 9431-9439 Species denotes patients Tax:9606
207 9521-9529 Species denotes Patients Tax:9606
208 9639-9647 Chemical denotes betadine MESH:D011206
209 8866-8875 Disease denotes infection MESH:D007239
222 10594-10597 Gene denotes hub Gene:1993
223 10020-10028 Species denotes patients Tax:9606
224 10343-10350 Species denotes patient Tax:9606
225 10466-10474 Species denotes patients Tax:9606
226 10527-10535 Species denotes Patients Tax:9606
227 10623-10631 Species denotes patients Tax:9606
228 10720-10728 Species denotes patients Tax:9606
229 10839-10847 Species denotes patients Tax:9606
230 10892-10902 Species denotes outpatient Tax:9606
231 10508-10516 Disease denotes COVID-19 MESH:C000657245
232 10644-10659 Disease denotes cardiac disease MESH:D006331
233 10977-10986 Disease denotes infection MESH:D007239
235 11043-11051 Disease denotes COVID-19 MESH:C000657245
274 11087-11095 Species denotes patients Tax:9606
275 11170-11178 Species denotes patients Tax:9606
276 11553-11561 Species denotes patients Tax:9606
277 11720-11728 Species denotes patients Tax:9606
278 12270-12278 Species denotes patients Tax:9606
279 12461-12471 Species denotes SARS-CoV-2 Tax:2697049
280 12502-12510 Species denotes patients Tax:9606
281 12536-12542 Species denotes people Tax:9606
282 12576-12584 Species denotes patients Tax:9606
283 12708-12716 Species denotes patients Tax:9606
284 13013-13021 Species denotes patients Tax:9606
285 13405-13413 Species denotes patients Tax:9606
286 13645-13653 Species denotes patients Tax:9606
287 11912-11918 Chemical denotes versed MESH:D008874
288 11078-11086 Disease denotes infected MESH:D007239
289 11161-11169 Disease denotes COVID-19 MESH:C000657245
290 11376-11384 Disease denotes infected MESH:D007239
291 12031-12044 Disease denotes venous access MESH:D020246
292 12148-12156 Disease denotes COVID-19 MESH:C000657245
293 12157-12166 Disease denotes infection MESH:D007239
294 12177-12196 Disease denotes respiratory failure MESH:D012131
295 12242-12261 Disease denotes cardiac involvement MESH:D006331
296 12284-12292 Disease denotes COVID-19 MESH:C000657245
297 12293-12302 Disease denotes infection MESH:D007239
298 12349-12361 Disease denotes hypertension MESH:D006973
299 12363-12371 Disease denotes diabetes MESH:D003920
300 12376-12398 Disease denotes cardiovascular disease MESH:D002318
301 12423-12440 Disease denotes myocardial injury MESH:D009202
302 12547-12551 Disease denotes died MESH:D003643
303 12557-12565 Disease denotes COVID-19 MESH:C000657245
304 12601-12613 Disease denotes heart damage MESH:D006331
305 12651-12665 Disease denotes cardiac arrest MESH:D006323
306 12722-12730 Disease denotes COVID-19 MESH:C000657245
307 12749-12772 Disease denotes cardiovascular symptoms MESH:D051271
308 12927-12946 Disease denotes respiratory failure MESH:D012131
309 12955-12962 Disease denotes hypoxia MESH:D000860
310 13340-13348 Disease denotes COVID-19 MESH:C000657245
311 13419-13427 Disease denotes COVID-19 MESH:C000657245
313 13894-13902 Disease denotes COVID-19 MESH:C000657245
315 15139-15145 Species denotes people Tax:9606
320 14060-14068 Species denotes patients Tax:9606
321 14321-14329 Species denotes patients Tax:9606
322 14045-14059 Disease denotes critically ill MESH:D016638
323 14133-14141 Disease denotes COVID-19 MESH:C000657245
325 16967-16972 Species denotes human Tax:9606
328 17504-17512 Species denotes patients Tax:9606
329 17544-17575 Disease denotes COVID-19 interstitial pneumonia MESH:C000657245
332 17804-17807 Gene denotes Hub Gene:1993
333 17777-17780 Gene denotes hub Gene:1993
343 17922-17925 Gene denotes hub Gene:1993
344 17993-18001 Species denotes patients Tax:9606
345 18053-18061 Species denotes patients Tax:9606
346 18150-18158 Species denotes patients Tax:9606
347 18258-18266 Species denotes patients Tax:9606
348 17975-17983 Disease denotes COVID-19 MESH:C000657245
349 18007-18026 Disease denotes respiratory failure MESH:D012131
350 18035-18043 Disease denotes COVID-19 MESH:C000657245
351 18132-18140 Disease denotes COVID-19 MESH:C000657245
355 18729-18736 Species denotes patient Tax:9606
356 18943-18951 Species denotes patients Tax:9606
357 18860-18868 Disease denotes COVID-19 MESH:C000657245
366 19863-19866 Gene denotes hub Gene:1993
367 19459-19465 Species denotes people Tax:9606
368 20209-20217 Species denotes patients Tax:9606
369 19126-19134 Disease denotes COVID-19 MESH:C000657245
370 19475-19483 Disease denotes infected MESH:D007239
371 20028-20036 Disease denotes COVID-19 MESH:C000657245
372 20107-20112 Disease denotes COVID MESH:C000657245
373 20200-20208 Disease denotes COVID-19 MESH:C000657245

MyTest

Id Subject Object Predicate Lexical cue
32301984-32003551-28904063 2846-2847 32003551 denotes 5
32301984-31986264-28904064 12690-12691 31986264 denotes 9
32301984-25144262-28904065 14087-14089 25144262 denotes 11
32301984-26573360-28904066 18798-18800 26573360 denotes 14