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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
9 99-107 Species denotes patients Tax:9606
10 257-265 Species denotes patients Tax:9606
11 284-292 Disease denotes infected MESH:D007239
12 298-322 Disease denotes coronavirus disease 2019 MESH:C000657245
13 324-332 Disease denotes COVID-19 MESH:C000657245
17 872-883 Species denotes coronavirus Tax:11118
18 920-928 Species denotes patients Tax:9606
19 842-850 Disease denotes COVID-19 MESH:C000657245
21 1874-1879 Species denotes Cisco Tax:36181
23 2414-2421 Species denotes patient Tax:9606
26 3267-3275 Disease denotes COVID-19 MESH:C000657245
27 3393-3411 Disease denotes COVID-19 pneumonia MESH:C000657245
30 4113-4116 Gene denotes Tom Gene:24148
31 4318-4326 Disease denotes COVID-19 MESH:C000657245
33 5802-5805 Gene denotes ACR Gene:49
37 6559-6562 Gene denotes NRC Gene:23054
38 6786-6793 Species denotes patient Tax:9606
39 6698-6706 Disease denotes COVID-19 MESH:C000657245
41 7361-7368 Disease denotes anxiety MESH:D001007
43 7597-7602 Species denotes Cisco Tax:36181
47 9864-9871 Species denotes patient Tax:9606
48 8971-8979 Disease denotes COVID-19 MESH:C000657245
49 9887-9895 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 2895-2899 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T2 2933-2937 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T3 3353-3356 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3353-3356 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 298-322 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 324-332 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 842-850 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 3267-3275 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 3393-3401 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 3402-3411 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T9 4318-4326 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 6698-6706 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 7361-7368 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T13 8971-8979 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 9887-9895 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 20-30 http://purl.obolibrary.org/obo/UBERON_0001456 denotes are facing
T2 350-351 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 433-436 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 729-731 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T5 1682-1683 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1731-1732 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1770-1771 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 2818-2819 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 2827-2833 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T10 2884-2885 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 3210-3211 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 3353-3356 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T13 3476-3477 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 3705-3706 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 3753-3754 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 3813-3814 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 3911-3912 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 3963-3964 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 4012-4014 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T20 4091-4092 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T21 4124-4126 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T22 5086-5089 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 5153-5154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 5267-5268 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 5468-5471 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T26 5479-5480 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 5551-5552 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 5925-5934 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized
T29 5998-6001 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T30 6015-6016 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 6194-6195 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 6381-6384 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T33 7046-7048 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T34 7201-7202 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 7293-7303 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T36 7541-7542 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T37 7824-7825 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 7881-7882 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 8684-8685 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 8757-8758 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 8989-8992 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T42 9023-9026 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T43 9141-9142 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 9205-9206 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 9513-9516 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T46 9631-9636 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 448-456 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T2 729-731 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T3 4012-4014 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T4 4124-4126 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T5 7046-7048 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 424-432 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T2 1389-1397 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T3 1577-1585 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T4 2451-2459 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T5 3049-3057 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T6 3613-3621 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T7 3976-3984 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T8 5077-5085 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior
T9 5957-5965 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T10 7981-7989 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T11 8025-8033 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T12 8509-8517 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T13 9077-9085 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T14 9504-9512 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T15 9582-9589 http://purl.obolibrary.org/obo/GO_0042056 denotes attract

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-183 Sentence denotes Radiology practices are facing unprecedented challenges not only in how they are providing care to patients but also in how to continue to educate the next generation of radiologists.
T3 184-393 Sentence denotes Although the priority is on providing timely and high-quality imaging to patients, especially those infected with coronavirus disease 2019 (COVID-19), there is still a need to maintain our educational mission.
T4 394-575 Sentence denotes For many institutions, remote learning has become the solution, although in reality, many radiology educators lack the expertise and experience using these technologies effectively.
T5 577-714 Sentence denotes During these challenging times, how can we best balance the competing demands of clinical work and the educational needs of our learners?
T6 716-808 Sentence denotes Ujas Parikh, MD, Chief Resident, Department of Radiology, New York University Langone Health
T7 809-956 Sentence denotes Situated in the epicenter of the COVID-19 pandemic, addressing coronavirus and the safety of our residents and patients is the number one priority.
T8 957-1184 Sentence denotes And although our residents are working to ensure imaging studies are rapidly dictated and necessary interventional procedures are performed, many are stepping up to the front lines alongside our medical and surgical colleagues.
T9 1185-1331 Sentence denotes Despite these challenges, we continue to learn in adaptive ways through consistency, flexibility, innovation, and, importantly, social distancing.
T10 1332-1445 Sentence denotes Along with free open access education, strategies to aid learning generally fall into the following four areas.1.
T11 1446-1504 Sentence denotes Consistency with the “status quo” using virtual platforms.
T12 1505-1630 Sentence denotes Traditional radiology teaching stems from clinical “at the workstation” learning as well as didactic and case-based teaching.
T13 1631-1702 Sentence denotes Continuing this approach virtually gives residents a sense of normalcy.
T14 1703-1822 Sentence denotes Residents now read out with a dedicated teaching attending through a built-in chat function and virtual screen sharing.
T15 1823-1960 Sentence denotes Daily didactic teaching is delivered virtually via Cisco WebEx (Milpitas, California), with residents logging in from their workstations.
T16 1961-2032 Sentence denotes Residents can also host “virtual rounds” with clinicians on the floors.
T17 2033-2147 Sentence denotes For example, senior residents lead pediatric intensive care unit rounds via video conferencing and screen sharing.
T18 2148-2246 Sentence denotes Residents gather clinical information from the team and interpret or review radiographic findings.
T19 2247-2433 Sentence denotes Even in this time of social distancing, residents add value by maintaining open lines of communication with referring teams, thereby improving workflow efficiency and patient management.
T20 2434-2436 Sentence denotes 2.
T21 2437-2490 Sentence denotes Continuity of learning through innovative approaches.
T22 2491-2659 Sentence denotes The key is to be creative and find innovative ways to meet resident educational needs without burdening radiologists who are trying to meet increasing clinical demands.
T23 2660-2834 Sentence denotes For example, our neuroradiology section now sends out weekly articles (ie, radiographics) with accompanying multiple-choice questions that can be answered on a mobile device.
T24 2835-2992 Sentence denotes In contrast, our abdominal imaging section hosts a virtual “body club” in which residents discuss body imaging cases encountered when on rotation or on call.
T25 2993-2995 Sentence denotes 3.
T26 2996-3058 Sentence denotes Informatics: PACS database and radiologic-pathologic learning.
T27 3059-3169 Sentence denotes Institutions should update their teaching files and accessible databases of existing cases for trainee review.
T28 3170-3412 Sentence denotes By harnessing the power of informatics, a quick search of the PACS database can quickly identify COVID-19 cases, which could then be reviewed by residents and faculty to “train their eye” on the multimodality appearance of COVID-19 pneumonia.
T29 3413-3645 Sentence denotes Radiology-pathology correlation can be streamlined by creating a module that sends automated e-mails once pathology or operative reports become available for imaging cases, thereby enhancing resident learning and improving accuracy.
T30 3646-3648 Sentence denotes 4.
T31 3649-3671 Sentence denotes Residents as teachers.
T32 3672-3902 Sentence denotes As medical schools transition to a virtual platform, radiology trainees can play a prominent role in teaching, particularly using imaging as a means to teach anatomy and disease pathology, possibly in an interdisciplinary setting.
T33 3903-3994 Sentence denotes Perhaps a “virtual radiology elective” would offer students a structured learning platform.
T34 3996-4090 Sentence denotes Teresa Chapman, MD, Program Director, Diagnostic Radiology Residency, University of Washington
T35 4091-4350 Sentence denotes A recent statement by Tom Nasca, MD, president and chief executive officer of the ACGME, acknowledged the many changes we are experiencing across the country and specifically addressed the use of telemedicine and the impact of COVID-19 on clinical volume [1].
T36 4351-4576 Sentence denotes His communication emphasizes that as needs and policies evolve, the program director, with consideration of the program’s Clinical Competency Committee, will assess the competence of each individual trainee before graduation.
T37 4577-4705 Sentence denotes Program directors must remain committed to providing excellent training to residents and fellows despite our current challenges.
T38 4706-4948 Sentence denotes In response to the need for social distancing, the first adaptation in our educational environment was to eliminate side-by-side supervision and to reduce congestion in reading rooms by establishing remote office spaces and home workstations.
T39 4949-5040 Sentence denotes Faculty and trainees have quickly become facile using screen-sharing software for teaching.
T40 5041-5131 Sentence denotes This rapid and widespread change in behavior has both immediate and long-lasting benefits.
T41 5132-5242 Sentence denotes The ability to share a teaching session allows medical students and visiting learners to participate remotely.
T42 5243-5422 Sentence denotes Furthermore, setting up a text page system for announcing upcoming interesting case conferences can bring residents together, thereby benefitting education and overall well-being.
T43 5423-5597 Sentence denotes Postponing nonurgent and elective procedures has led to a profound decrease in clinical work for some subspecialties leading to a reduced daily workforce, including trainees.
T44 5598-5757 Sentence denotes While at home, residents are available to assist at any moment and can also participate in readout sessions, lectures, and multidisciplinary sessions remotely.
T45 5758-6042 Sentence denotes Multiple radiology societies, including the ACR, Association of University Radiologists (AUR), Association of Program Directors in Radiology (APDR), and RSNA, quickly organized and disseminated free learning material for residents with the aim of providing a core resident curriculum.
T46 6043-6218 Sentence denotes In addition, senior residents with an interest in radiology education can help develop curricular materials in their area of interest when they are on a remote study rotation.
T47 6219-6374 Sentence denotes The impact of decreased clinical volumes as it relates to meeting graduation and program requirements is of concern to both trainees and program directors.
T48 6375-6457 Sentence denotes ACGME has posted communications from several specialties, including radiology [2].
T49 6458-6707 Sentence denotes Accrediting and certifying bodies, including the ABR, ACGME, FDA, and Nuclear Regulatory Commission (NRC), recognize the impact of this pandemic on trainees’ education, and specific allowances may be granted for those residents impacted by COVID-19.
T50 6708-6847 Sentence denotes For example, creative solutions such as interpretation of blinded, historical patient cases may become necessary for some senior residents.
T51 6848-7027 Sentence denotes As always and especially at this time, program directors should pay close attention to senior residents’ clinical experiences and ensure their readiness to practice independently.
T52 7029-7036 Sentence denotes Cari L.
T53 7037-7136 Sentence denotes Motuzas, MD, Program Director, Diagnostic Radiology Residency, Vanderbilt University Medical Center
T54 7137-7269 Sentence denotes How do we adapt to the restrictions related to this pandemic in a way that allows us to continue to support the educational mission?
T55 7270-7400 Sentence denotes Continuing educational activities preserves some “normalcy” for residents and can decrease anxiety, given the current uncertainty.
T56 7401-7424 Sentence denotes First, do what is easy.
T57 7425-7540 Sentence denotes Keep the lecture schedule and use technology to allow all parties to participate irrespective of physical location.
T58 7541-7683 Sentence denotes A virtual platform such as Zoom (San Jose, California), Cisco WebEx, or Go To Meeting (Boston, Massachusetts) can facilitate virtual meetings.
T59 7684-7786 Sentence denotes Assigning one or two technologically savvy residents to support faculty can facilitate rapid adoption.
T60 7787-7949 Sentence denotes For faculty uncomfortable talking to a computer screen, the session could still take place in a conference room provided on-site attendees are socially distanced.
T61 7950-8087 Sentence denotes With medical students, virtual learning can be as interactive as in-person learning provided the faculty explicitly encourages questions.
T62 8088-8229 Sentence denotes This can be accomplished by either stating up front that questions are encouraged at any time or pausing frequently and asking for questions.
T63 8230-8368 Sentence denotes Sometimes providing prompts, such as asking for the modality, plane of imaging, or imaging finding, can engage students more successfully.
T64 8369-8518 Sentence denotes With workstations spread out and sometimes in different buildings, faculty must find new ways to provide meaningful feedback and facilitate learning.
T65 8519-8616 Sentence denotes Most PACS systems have direct messaging that can allow faculty to provide case-specific feedback.
T66 8617-8740 Sentence denotes Faculty can also share interesting cases and provide trainees with a list of teaching cases to review at their convenience.
T67 8741-8842 Sentence denotes Finally, having a virtual town hall can help trainees reconnect, share updates, and express concerns.
T68 8843-8945 Sentence denotes These conversations can break the feeling of isolation and remind us that we are all in this together.
T69 8947-8954 Sentence denotes Summary
T70 8955-9158 Sentence denotes In summary, the COVID-19 pandemic has challenged the status quo but has led to rapid adoption of virtual and experiential learning opportunities that none of us could have imagined just a few months ago.
T71 9159-9234 Sentence denotes Most institutions have embraced technology as a means to maintain normalcy.
T72 9235-9452 Sentence denotes Virtual meetings preserve dedicated teaching conferences for both trainees and medical students, facilitate ongoing workstation feedback to residents, and bring the community together in this era of social distancing.
T73 9453-9637 Sentence denotes This rapid and exponential integration of distance learning has great promise to reach learners across the globe and potentially attract the best and brightest students into the field.
T74 9638-9877 Sentence denotes For residency programs and trainees, although there remains some uncertainty around how to best meet expected case logs and rotation requirements, we must all remain adaptable, embrace innovation, and continue to add value to patient care.
T75 9878-9951 Sentence denotes In fact, COVID-19 may just be revolutionizing how we teach in the future.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 3009-3013 Phenotype denotes PACS http://purl.obolibrary.org/obo/HP_0006699
T2 3232-3236 Phenotype denotes PACS http://purl.obolibrary.org/obo/HP_0006699
T3 3402-3411 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 7361-7368 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T5 8524-8528 Phenotype denotes PACS http://purl.obolibrary.org/obo/HP_0006699

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T3 298-309 NCBITaxon:11118 denotes coronavirus
T4 324-332 SP_7 denotes COVID-19
T5 424-432 GO:0007612 denotes learning
T6 448-456 CHEBI:75958;CHEBI:75958 denotes solution
T7 705-713 GO:0007612 denotes learners
T8 842-850 SP_7 denotes COVID-19
T9 872-883 NCBITaxon:11118 denotes coronavirus
T10 1226-1231 GO:0007612 denotes learn
T11 1389-1397 GO:0007612 denotes learning
T12 1577-1585 GO:0007612 denotes learning
T13 2078-2087 CL:0002495 denotes intensive
T14 2088-2092 CL:0002486 denotes care
T15 2451-2459 GO:0007612 denotes learning
T16 2852-2861 UBERON:0000916 denotes abdominal
T17 3049-3057 GO:0007612 denotes learning
T18 3267-3275 SP_7 denotes COVID-19
T19 3353-3356 UBERON:0000970 denotes eye
T20 3393-3401 SP_7 denotes COVID-19
T21 3613-3621 GO:0007612 denotes learning
T22 3830-3837 UBERON:0001062 denotes anatomy
T23 3976-3984 GO:0007612 denotes learning
T36 4318-4326 SP_7 denotes COVID-19
T37 5957-5965 GO:0007612 denotes learning
T38 6528-6535 GO:0005634 denotes Nuclear
T39 6536-6546 GO:0065007 denotes Regulatory
T40 6698-6706 SP_7 denotes COVID-19
T41 6730-6739 CHEBI:75958;CHEBI:75958 denotes solutions
T42 7981-7989 GO:0007612 denotes learning
T43 8018-8024 NCBITaxon:9606 denotes person
T44 8025-8033 GO:0007612 denotes learning
T45 8509-8517 GO:0007612 denotes learning
T46 8524-8528 SO:0000154 denotes PACS
T47 8971-8979 SP_7 denotes COVID-19
T48 9077-9085 GO:0007612 denotes learning
T49 9504-9512 GO:0007612 denotes learning
T50 9540-9548 GO:0007612 denotes learners
T51 9560-9565 UBERON:0010230 denotes globe
T52 9887-9895 SP_7 denotes COVID-19
T44273 298-309 NCBITaxon:11118 denotes coronavirus
T51496 324-332 SP_7 denotes COVID-19
T21775 424-432 GO:0007612 denotes learning
T98012 448-456 CHEBI:75958;CHEBI:75958 denotes solution
T49125 705-713 GO:0007612 denotes learners
T87893 842-850 SP_7 denotes COVID-19
T84628 872-883 NCBITaxon:11118 denotes coronavirus
T67247 1226-1231 GO:0007612 denotes learn
T52746 1389-1397 GO:0007612 denotes learning
T97119 1577-1585 GO:0007612 denotes learning
T58377 2078-2087 CL:0002495 denotes intensive
T27089 2088-2092 CL:0002486 denotes care
T52057 2451-2459 GO:0007612 denotes learning
T93509 2852-2861 UBERON:0000916 denotes abdominal
T52423 3049-3057 GO:0007612 denotes learning
T72763 3267-3275 SP_7 denotes COVID-19
T8525 3353-3356 UBERON:0000970 denotes eye
T20027 3393-3401 SP_7 denotes COVID-19
T51441 3613-3621 GO:0007612 denotes learning
T73783 3830-3837 UBERON:0001062 denotes anatomy
T53298 3976-3984 GO:0007612 denotes learning