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PMC:7172841 / 9351-10413 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T40 194-197 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T41 219-228 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T91 39-47 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 39-43 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T93 97-113 Disease denotes bacterial sepsis http://purl.obolibrary.org/obo/MONDO_0005229
T94 156-159 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545
T95 448-456 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T96 448-452 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 494-497 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545
T98 545-564 Disease denotes Respiratory Failure http://purl.obolibrary.org/obo/MONDO_0021113
T99 611-619 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 759-767 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 898-906 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 911-914 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T59 219-228 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T60 915-917 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T61 1004-1008 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T44 198-200 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T45 201-210 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T76 0-350 Sentence denotes Immune classification of patients with SARS-CoV-2 was performed by using the tools suggested for bacterial sepsis, i.e., ferritin more than 4,420 ng/mL for MAS (Kyriazopoulou et al., 2017), and HLA-DR molecules on CD14 monocytes lower than 5,000, in the absence of elevated ferritin, for the immune dysregulation phenotype (Lukaszewicz et al., 2009).
T77 351-509 Sentence denotes It was found that contrary to the patients with bacterial CAP and SRF, all patients with SRF and SARS-CoV-2 had either immune dysregulation or MAS (Table 2 ).
T78 510-668 Sentence denotes Table 2 Association between Severe Respiratory Failure and Immune Classification among Patients with COVID-19 and Patients with Sepsis Caused by Bacterial CAP
T79 669-744 Sentence denotes Number of patients with SRF/total patients [%, (−95% CI, +95% CI)] p value∗
T80 745-767 Sentence denotes Bacterial CAP COVID-19
T81 768-831 Sentence denotes Intermediate 21/40 [52.5 (27.5-67.1)] 0/26 [0 (0-12.9)] <0.0001
T82 832-970 Sentence denotes Immunoparalysis (for bacterial CAP) and immune dysregulation (for COVID-19) or MAS 35/64 [54.7 (42.6-66.3)] 28/28 [100 (87.9-100)] <0.0001
T83 971-1009 Sentence denotes ∗comparisons by the Fisher exact test.
T84 1010-1062 Sentence denotes Abbreviation is as follows: CI, confidence interval.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T42 107-113 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T43 292-312 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958
T44 470-490 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958
T45 545-564 Phenotype denotes Respiratory Failure http://purl.obolibrary.org/obo/HP_0002878
T46 638-644 Phenotype denotes Sepsis http://purl.obolibrary.org/obo/HP_0100806
T47 872-892 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T165 39-49 SP_7 denotes SARS-CoV-2
T166 97-106 NCBITaxon:2 denotes bacterial
T167 194-197 PR:000029150 denotes HLA
T168 201-210 CHEBI:36357;CHEBI:36357 denotes molecules
T169 214-218 PR:000001889 denotes CD14
T170 219-228 CL:0000576 denotes monocytes
T171 292-298 UBERON:0002405 denotes immune
T172 299-312 GO:0065007 denotes dysregulation
T173 399-408 NCBITaxon:2 denotes bacterial
T174 448-458 SP_7 denotes SARS-CoV-2
T175 470-476 UBERON:0002405 denotes immune
T176 477-490 GO:0065007 denotes dysregulation
T182 611-619 SP_7 denotes COVID-19
T2298 24-33 NCBITaxon:7719 denotes patients
T63395 34-39 NCBITaxon:10239 denotes with
T93033 73-81 SP_7 denotes the tool
T14745 97-105 SP_7 denotes bacteria
T59526 144-149 UBERON:0002405;GO:0006955 denotes 0 ng/
T58621 150-160 GO:0042110 denotes L for MAS
T18082 176-189 GO:0065007 denotes t al., 2017),
T29233 228-231 PR:000001004 denotes lo
T34864 232-236 PR:000001006 denotes er t
T94440 238-249 CL:0000542 denotes n 5,000, in
T36159 263-267 PR:000001006 denotes f el
T68934 269-280 CL:0000542 denotes ated ferrit
T98249 290-294 PR:000001483 denotes e im
T23756 296-300 PR:000001024 denotes ne d
T95024 301-305 PR:000001006 denotes sreg
T10452 307-318 CL:0000542 denotes ation pheno
T64864 328-332 PR:000001483 denotes szew
T34718 333-337 PR:000001024 denotes cz e
T36171 338-342 PR:000001006 denotes  al.
T4616 359-363 PR:000001002 denotes ound
T58716 364-368 PR:000001006 denotes that
T17961 370-381 CL:0000542 denotes ontrary to
T7750 413-423 UBERON:0001004 denotes and SRF, a
T84754 486-495 NCBITaxon:7719 denotes tion or M
T72085 496-501 NCBITaxon:10239 denotes S (Ta
T18794 506-514 SP_7 denotes ). Tabl
T43119 519-521 PR:000001092 denotes ss
T6790 521-522 PR:000001092;GO:1990774 denotes o
T98296 522-524 PR:000001092;GO:0032620 denotes ci
T16142 581-588 NCBITaxon:5478 denotes ificati
T99218 589-597 NCBITaxon:8296 denotes n among
T387 966-976 SP_7 denotes 0001 ∗comp
T388 1006-1009 PR:000001004 denotes st.
T389 1010-1014 PR:000001006 denotes Abbr
T390 1016-1027 CL:0000542 denotes iation is a
T391 1041-1045 PR:000001006 denotes con
T392 1047-1058 CL:0000542 denotes dence inter

2_test

Id Subject Object Predicate Lexical cue
32320677-28918754-19656934 183-187 28918754 denotes 2017
32320677-19707128-19656935 344-348 19707128 denotes 2009

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
330 679-687 Species denotes patients Tax:9606
331 703-711 Species denotes patients Tax:9606
332 693-696 Disease denotes SRF
333 759-767 Disease denotes COVID-19 MESH:C000657245
334 827-847 Disease denotes 0001 Immunoparalysis
335 898-906 Disease denotes COVID-19 MESH:C000657245
341 597-605 Species denotes Patients Tax:9606
342 624-632 Species denotes Patients Tax:9606
343 545-564 Disease denotes Respiratory Failure MESH:D012131
344 611-619 Disease denotes COVID-19 MESH:C000657245
345 638-644 Disease denotes Sepsis MESH:D018805
355 214-218 Gene denotes CD14 Gene:929
356 25-33 Species denotes patients Tax:9606
357 39-49 Species denotes SARS-CoV-2 Tax:2697049
358 385-393 Species denotes patients Tax:9606
359 426-434 Species denotes patients Tax:9606
360 448-458 Species denotes SARS-CoV-2 Tax:2697049
361 97-113 Disease denotes bacterial sepsis MESH:D016920
362 417-420 Disease denotes SRF
363 440-443 Disease denotes SRF