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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T32 1141-1146 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T33 2854-2870 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T34 2866-2870 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T35 2983-2991 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T36 3835-3840 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T37 3910-3915 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T38 4156-4163 Body_part denotes alanine http://purl.org/sig/ont/fma/fma82749
T39 4460-4465 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T40 4679-4682 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T41 4704-4713 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 462-467 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T4 1141-1146 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T5 1733-1738 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T6 2860-2865 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T7 3835-3840 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T8 3910-3915 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T9 4460-4465 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T54 25-44 Disease denotes Respiratory Failure http://purl.obolibrary.org/obo/MONDO_0021113
T55 55-63 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 55-59 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T57 95-98 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545
T58 174-182 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T59 174-178 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T60 208-221 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T61 328-342 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T62 333-342 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T63 379-387 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 379-383 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T65 572-586 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T66 577-586 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T67 789-797 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 838-854 Disease denotes bacterial sepsis http://purl.obolibrary.org/obo/MONDO_0005229
T69 859-867 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 1008-1016 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T71 1275-1283 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 1472-1480 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T73 1821-1829 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T74 1931-1939 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 2121-2130 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T76 2141-2149 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 2141-2145 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T78 2155-2174 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T79 2182-2201 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T80 2212-2220 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 2212-2216 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T82 2241-2249 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 2241-2245 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 3749-3773 Disease denotes Type 2 diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T85 3756-3773 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T86 3835-3848 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T87 3901-3923 Disease denotes Coronary heart disease http://purl.obolibrary.org/obo/MONDO_0005010
T88 3910-3923 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T89 4018-4037 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T90 4393-4402 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T91 4524-4532 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 4524-4528 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T93 4582-4598 Disease denotes bacterial sepsis http://purl.obolibrary.org/obo/MONDO_0005229
T94 4641-4644 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545
T95 4933-4941 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T96 4933-4937 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 4979-4982 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545
T98 5030-5049 Disease denotes Respiratory Failure http://purl.obolibrary.org/obo/MONDO_0021113
T99 5096-5104 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 5244-5252 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 5383-5391 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 5396-5399 Disease denotes MAS http://purl.obolibrary.org/obo/MONDO_0015545

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T37 137-147 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T38 454-455 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 1141-1146 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T40 1966-1967 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 2279-2281 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T42 2380-2384 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T43 2380-2384 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T44 2425-2427 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T45 2860-2865 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T46 2866-2870 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T47 3835-3840 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T48 3835-3840 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T49 3835-3840 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T50 3835-3840 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T51 3873-3875 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T52 3910-3915 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T53 3910-3915 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T54 3910-3915 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T55 3910-3915 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T56 4057-4061 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T57 4188-4197 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T58 4460-4465 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T59 4704-4713 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T60 5400-5402 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T61 5489-5493 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T25 639-644 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T26 923-925 Chemical denotes MV http://purl.obolibrary.org/obo/CHEBI_73616
T27 1233-1235 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T28 2310-2312 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T29 2462-2464 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T30 2479-2481 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T31 2573-2575 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T32 2658-2660 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T33 2741-2743 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T34 2843-2845 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T35 3400-3410 Chemical denotes Creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T36 3488-3497 Chemical denotes bilirubin http://purl.obolibrary.org/obo/CHEBI_16990
T37 3569-3572 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T38 4156-4163 Chemical denotes alanine http://purl.obolibrary.org/obo/CHEBI_16449
T39 4227-4230 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T40 4232-4241 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T43 4419-4421 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T44 4683-4685 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T45 4686-4695 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T39 0-98 Sentence denotes All Patients with Severe Respiratory Failure Caused by SARS-CoV-2 Have Immune Dysregulation or MAS
T40 99-244 Sentence denotes We assessed the differences of immune activation and dysregulation between SARS-CoV-2 and other known severe infections in three patient cohorts:
T41 245-390 Sentence denotes 104 patients with sepsis caused by bacterial CAP; 21 historical patients with 2009 H1N1 influenza; and 54 patients with CAP caused by SARS-CoV-2.
T42 391-552 Sentence denotes Patients with bacterial CAP were screened for participation in a large-scale randomized clinical trial with the acronym PROVIDE (ClinicalTrials.gov NCT03332225).
T43 553-710 Sentence denotes Patients with 2009 H1N1 influenza have been described in previous publications of our group (Giamarellos-Bourboulis et al., 2009, Raftogiannis et al., 2010).
T44 711-824 Sentence denotes The clinical characteristics of patients with bacterial CAP and CAP caused by COVID-19 are described in Table 1 .
T45 825-948 Sentence denotes Each cohort (bacterial sepsis and COVID-19) is split into patients who developed SRF and required MV and those who did not.
T46 949-1670 Sentence denotes Three main features need to be outlined: (1) patients with COVID-19 and SRF are less severe than those with severe bacterial CAP, on the basis of the traditional severity scores of sequential organ failure assessment (SOFA) and acute physiology and chronic health evaluation (APACHE) II; (2) this leads to the conclusion that COVID-19 patients undergo an acute immune dysregulation with deterioration into SRF before the overall state of severity is advanced; and (3) although the burden of co-morbidities of patients with COVID-19, as expressed by the Charlson’s co-morbidity index, is higher among patients with SRF than among patients without SRF, it remains remarkably lower that traditional bacterial CAP and sepsis.
T47 1671-1860 Sentence denotes It was also notable that the admission values of Glasgow Coma Scale scores of patients with bacterial CAP were 8.80 ± 4.76, and that of patients with COVID-19 was 14.71 ± 0.20 (p < 0.0001).
T48 1861-2024 Sentence denotes This finding is fully compatible with clinical descriptions of severe COVID-19: patients are admitted at a relatively good clinical state and suddenly deteriorate.
T49 2025-2151 Sentence denotes Table 1 Baseline Clinical and Laboratory Characteristics of the Cohorts of Bacterial CAP and of Pneumonia Caused by SARS-CoV-2
T50 2152-2201 Sentence denotes No respiratory failure Severe respiratory failure
T51 2202-2259 Sentence denotes Bacterial SARS-CoV-2 p value Bacterial SARS-CoV-2 p value
T52 2260-2290 Sentence denotes Number of patients 48 26 56 28
T53 2291-2379 Sentence denotes Age (years, mean ± SD) 74.8 ± 16.8 59.2 ± 10.3 <0.0001 74.0 ± 12.6∗ 67.8 ± 10.8# <0.0001
T54 2380-2454 Sentence denotes Male gender (n, %) 25 (52.1) 15 (57.7) 0.807 27 (48.2)∗ 25 (89.3)∗∗ 0.0003
T55 2455-2553 Sentence denotes APACHE II score (mean ± SD) 18.50 ± 8.19 5.88 ± 3.40 <0.0001 26.63 ± 8.52∗∗ 10.17 ± 3.64## <0.0001
T56 2554-2645 Sentence denotes SOFA score (mean ± SD) 7.87 ± 3.81 1.50 ± 0.82 <0.0001 11.46 ± 3.15∗∗ 5.71 ± 2.19## <0.0001
T57 2646-2728 Sentence denotes CCI (mean ± SD) 5.53 ± 2.13 2.16 ± 1.46 <0.0001 5.57 ± 2.20∗ 3.39 ± 2.16## <0.0001
T58 2729-2816 Sentence denotes PSI (mean ± SD) 146.5 ± 43.2 80.0 ± 30.7 <0.0001 177.4 ± 40.4∗∗∗ 121.2 ± 28.3## <0.0001
T59 2817-2846 Sentence denotes Laboratory values (mean ± SD)
T60 2847-2972 Sentence denotes  Total white blood cell count (/mm3) 13,852.7 ± 7279.3 6379.6 ± 1993.9 <0.0001 17,666.9 ± 12,799.9∗ 9447.8 ± 3308.6## <0.0001
T61 2973-3078 Sentence denotes  Absolute platelet count (x103 /mm3) 201.3 ± 124.8 243.8 ± 109.1 0.141 224.3 ± 111.0∗ 213.9 ± 71.8∗ 0.654
T62 3079-3145 Sentence denotes  INR 1.28 ± 0.64 1.11 ± 0.15 0.187 1.33 ± 0.45∗ 1.17 ± 0.20∗ 0.077
T63 3146-3226 Sentence denotes  aPTT (secs) 37.19 ± 12.95 33.40 ± 6.22 0.165 38.42 ± 23.00∗ 37.52 ± 9.88∗ 0.844
T64 3227-3316 Sentence denotes  Fibrinogen (mg/dl) 475.6 ± 196.3 528.9 ± 152.5 0.234 495.3 ± 290.5∗ 693.5 ± 188.6# 0.002
T65 3317-3398 Sentence denotes  D-dimers (g/dl) 7.66 ± 13.9 2.76 ± 2.02 0.079 1.46 ± 1.62∗∗ 5.43 ± 6.41∗ <0.0001
T66 3399-3480 Sentence denotes  Creatinine (mg/dl) 1.55 ± 1.00 0.85 ± 0.19 0.001 1.71 ± 0.90∗ 1.11 ± 0.43# 0.001
T67 3481-3567 Sentence denotes  Total bilirubin (mg/dl) 1.43 ± 1.92 0.67 ± 0.50 0.052 1.17 ± 1.88∗ 0.97 ± 0.68∗ 0.588
T68 3568-3644 Sentence denotes  AST (U/l) 155.1 ± 308.1 39.9 ± 28.5 0.062 311.7 ± 748.2∗ 76.6 ± 59.2# 0.102
T69 3645-3721 Sentence denotes  ALT (U/l) 234.6 ± 764.3 40.2 ± 24.9 0.200 175.8 ± 378.0∗ 64.3 ± 62.2∗ 0.126
T70 3722-3747 Sentence denotes Main comorbidities (n, %)
T71 3748-3825 Sentence denotes  Type 2 diabetes mellitus 13 (27.1) 4 (15.4) 0.386 21 (37.5)∗ 6 (21.4)∗ 0.214
T72 3826-3899 Sentence denotes  Chronic heart failure 8 (16.7) 3 (11.5) 0.737 18 (32.1)∗ 4 (14.3)∗ 0.114
T73 3900-3970 Sentence denotes  Coronary heart disease 7 (14.6) 2 (7.7) 0.479 10 (17.9) 5 (17.9)∗ 1.0
T74 3971-4120 Sentence denotes Comparisons with the respective groups without respiratory failure by the Student’s t test: ∗p-non-significant; ∗∗p < 0.05; #p < 0.001; ##p < 0.0001.
T75 4121-4484 Sentence denotes Abbreviations are as follows: ALT, alanine aminotransferase; aPTT, activated partial thromboplastin time; AST, aspartate aminotransferase; APACHE, acute physiology and chronic health evaluation; CCI, Charlson’s comorbidity index; INR, international normalized ratio; PSI, pneumonia severity index; SD, standard deviation; SOFA, sequential organ failure assessment
T76 4485-4835 Sentence denotes Immune classification of patients with SARS-CoV-2 was performed by using the tools suggested for bacterial sepsis, i.e., ferritin more than 4,420 ng/mL for MAS (Kyriazopoulou et al., 2017), and HLA-DR molecules on CD14 monocytes lower than 5,000, in the absence of elevated ferritin, for the immune dysregulation phenotype (Lukaszewicz et al., 2009).
T77 4836-4994 Sentence denotes It was found that contrary to the patients with bacterial CAP and SRF, all patients with SRF and SARS-CoV-2 had either immune dysregulation or MAS (Table 2 ).
T78 4995-5153 Sentence denotes Table 2 Association between Severe Respiratory Failure and Immune Classification among Patients with COVID-19 and Patients with Sepsis Caused by Bacterial CAP
T79 5154-5229 Sentence denotes Number of patients with SRF/total patients [%, (−95% CI, +95% CI)] p value∗
T80 5230-5252 Sentence denotes Bacterial CAP COVID-19
T81 5253-5316 Sentence denotes Intermediate 21/40 [52.5 (27.5-67.1)] 0/26 [0 (0-12.9)] <0.0001
T82 5317-5455 Sentence denotes Immunoparalysis (for bacterial CAP) and immune dysregulation (for COVID-19) or MAS 35/64 [54.7 (42.6-66.3)] 28/28 [100 (87.9-100)] <0.0001
T83 5456-5494 Sentence denotes ∗comparisons by the Fisher exact test.
T84 5495-5547 Sentence denotes Abbreviation is as follows: CI, confidence interval.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T27 25-44 Phenotype denotes Respiratory Failure http://purl.obolibrary.org/obo/HP_0002878
T28 71-91 Phenotype denotes Immune Dysregulation http://purl.obolibrary.org/obo/HP_0002958
T29 201-218 Phenotype denotes severe infections http://purl.obolibrary.org/obo/HP_0032169
T30 263-269 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T31 848-854 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T32 1310-1330 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958
T33 1663-1669 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T34 1728-1732 Phenotype denotes Coma http://purl.obolibrary.org/obo/HP_0001259
T35 2121-2130 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T36 2155-2174 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T37 2182-2201 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T38 3749-3764 Phenotype denotes Type 2 diabetes http://purl.obolibrary.org/obo/HP_0005978
T39 3827-3848 Phenotype denotes Chronic heart failure http://purl.obolibrary.org/obo/HP_0001635
T40 4018-4037 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T41 4393-4402 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T42 4592-4598 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T43 4777-4797 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958
T44 4955-4975 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958
T45 5030-5049 Phenotype denotes Respiratory Failure http://purl.obolibrary.org/obo/HP_0002878
T46 5123-5129 Phenotype denotes Sepsis http://purl.obolibrary.org/obo/HP_0100806
T47 5357-5377 Phenotype denotes immune dysregulation http://purl.obolibrary.org/obo/HP_0002958

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T126 55-65 SP_7 denotes SARS-CoV-2
T127 78-91 GO:0065007 denotes Dysregulation
T128 130-136 UBERON:0002405;GO:0006955 denotes immune
T129 137-147 GO:0042110 denotes activation
T130 152-165 GO:0065007 denotes dysregulation
T131 174-184 SP_7 denotes SARS-CoV-2
T132 280-289 NCBITaxon:2 denotes bacterial
T133 379-389 SP_7 denotes SARS-CoV-2
T134 405-414 NCBITaxon:2 denotes bacterial
T135 757-766 NCBITaxon:2 denotes bacterial
T136 789-797 SP_7 denotes COVID-19
T137 838-847 NCBITaxon:2 denotes bacterial
T138 859-867 SP_7 denotes COVID-19
T139 1008-1016 SP_7 denotes COVID-19
T140 1064-1073 NCBITaxon:2 denotes bacterial
T141 1141-1146 UBERON:0000062 denotes organ
T142 1275-1283 SP_7 denotes COVID-19
T143 1310-1316 UBERON:0002405;GO:0006955 denotes immune
T144 1317-1330 GO:0006955 denotes dysregulation
T145 1472-1480 SP_7 denotes COVID-19
T146 1645-1654 NCBITaxon:2 denotes bacterial
T147 1763-1772 NCBITaxon:2 denotes bacterial
T148 1821-1829 SP_7 denotes COVID-19
T149 1931-1939 SP_7 denotes COVID-19
T162 2141-2151 SP_7 denotes SARS-CoV-2
T163 4018-4029 UBERON:0001004 denotes respiratory
T164 4460-4465 UBERON:0000062 denotes organ
T165 4524-4534 SP_7 denotes SARS-CoV-2
T166 4582-4591 NCBITaxon:2 denotes bacterial
T167 4679-4682 PR:000029150 denotes HLA
T168 4686-4695 CHEBI:36357;CHEBI:36357 denotes molecules
T169 4699-4703 PR:000001889 denotes CD14
T170 4704-4713 CL:0000576 denotes monocytes
T171 4777-4783 UBERON:0002405 denotes immune
T172 4784-4797 GO:0065007 denotes dysregulation
T173 4884-4893 NCBITaxon:2 denotes bacterial
T174 4933-4943 SP_7 denotes SARS-CoV-2
T175 4955-4961 UBERON:0002405 denotes immune
T176 4962-4975 GO:0065007 denotes dysregulation
T182 5096-5104 SP_7 denotes COVID-19
T58 1931-1939 SP_7 denotes COVID-19
T63 2182-2193 UBERON:0001004 denotes respiratory
T255 1676-1689 GO:0065007 denotes s also notabl
T256 1693-1701 SP_7 denotes at the a
T257 1729-1738 CHEBI:36357;CHEBI:36357 denotes oma Scale
T258 1746-1751 SP_6;NCBITaxon:9606 denotes of pa
T259 1752-1761 CL:0000738 denotes ients wit
T260 1762-1769 CHEBI:59132;CHEBI:59132 denotes bacter
T261 1783-1787 PR:000001889 denotes .80 
T262 1788-1797 CL:0000576 denotes 4.76, an
T263 1813-1822 NCBITaxon:2 denotes ts with C
T264 1845-1855 SP_7 denotes 0 (p < 0.0
T265 1892-1897 UBERON:0002405;GO:0006955 denotes e wit
T266 1898-1908 GO:0042110 denotes clinical
T267 1943-1952 NCBITaxon:2 denotes tients ar
T268 1961-1974 GO:0065007 denotes d at a relati
T269 1979-1987 SP_7 denotes good cli
T270 2039-2042 PR:000029150 denotes ne
T271 2049-2053 PR:000001889 denotes l an
T272 2054-2063 CL:0000576 denotes Laborato
T273 2121-2131 SP_7 denotes Pneumonia
T274 2172-2177 UBERON:0002405;GO:0006955 denotes re Se
T275 2178-2189 GO:0006955 denotes ere respira
T276 2195-2203 CHEBI:82594;CHEBI:82594 denotes ailure B
T277 2226-2231 UBERON:0001977 denotes alue
T278 2249-2258 NCBITaxon:2 denotes -2 p valu
T279 2351-2367 GO:0006909 denotes ± 12.6∗ 67.8 ± 1
T280 2408-2418 SP_7 denotes 15 (57.7)
T281 2458-2463 UBERON:0002405;GO:0006955 denotes CHE I
T282 2464-2474 GO:0006955 denotes score (me
T283 2489-2497 CL:0000775 denotes ± 8.19 5
T284 2539-2549 SP_7 denotes 3.64## <0.
T285 2589-2594 UBERON:0002405;GO:0006955 denotes 1.50 
T286 2595-2605 GO:0006955 denotes 0.82 <0.0
T287 2620-2628 CL:0000576 denotes 5∗∗ 5.71
T95576 2670-2680 SP_7 denotes .13 2.16 ±
T289 2720-2725 UBERON:0002405;GO:0006955 denotes <0.0
T290 2726-2736 GO:0006955 denotes 01 PSI (me
T17416 3095-3105 SP_7 denotes 1.11 ± 0.
T36679 3133-3136 PR:000001004 denotes 0.
T46992 3137-3141 PR:000001006 denotes 0∗ 0
T27901 3143-3155 CL:0000542 denotes 77  aPTT (se
T61002 3165-3169 PR:000001006 denotes ± 12
T78906 3171-3182 CL:0000542 denotes 5 33.40 ± 6
T18777 3188-3192 PR:000001483 denotes 165
T82514 3193-3197 PR:000001024 denotes 8.42
T67194 3198-3202 PR:000001006 denotes ± 23
T57852 3215-3219 PR:000001002 denotes 9.88
T74187 3220-3224 PR:000001006 denotes 0.8
T51485 3226-3238 CL:0000542 denotes  Fibrinogen
T75127 3270-3278 SP_7 denotes 52.5 0.2
T79014 3419-3427 SP_7 denotes 1.55 ± 1
T84083 3442-3445 PR:000001004 denotes 0.
T30397 3446-3450 PR:000001006 denotes 01 1
T75758 3452-3463 CL:0000542 denotes 1 ± 0.90∗ 1
T41299 3479-3484 PR:000001483 denotes 1  To
T12888 3485-3489 PR:000001006 denotes al b
T4856 3501-3505 PR:000001002 denotes /dl)
T26978 3506-3510 PR:000001006 denotes 1.43
T99843 3512-3523 CL:0000542 denotes 1.92 0.67 
T26411 3561-3566 UBERON:0002405 denotes 0.58
T52616 3567-3581 GO:0065007 denotes  AST (U/l) 15
T19523 3592-3600 SP_7 denotes 39.9 ±
T71646 3626-3629 PR:000001004 denotes 76.
T34262 3631-3635 PR:000001006 denotes ± 59
T24520 3637-3649 CL:0000542 denotes # 0.102  ALT
T18346 3659-3663 PR:000001006 denotes .6 ±
T91659 3665-3676 CL:0000542 denotes 64.3 40.2 ±
T48046 3686-3690 PR:000001483 denotes 0 17
T24770 3691-3695 PR:000001024 denotes .8 ±
T13763 3696-3700 PR:000001006 denotes 378.
T41969 3738-3743 UBERON:0002405 denotes es (n
T34348 3836-3843 NCBITaxon:10239 denotes eart fa
T64438 3876-3886 SP_7 denotes (32.1)∗ 4
T57025 3917-3920 PR:000001004 denotes ise
T64196 3921-3925 PR:000001006 denotes se 7
T43300 3927-3938 CL:0000542 denotes 14.6) 2 (7.
T63493 3959-3963 PR:000001483 denotes (17.
T53839 3964-3968 PR:000001024 denotes )∗ 1
T83790 3969-3973 PR:000001006 denotes 0 Co
T90081 3985-3989 PR:000001002 denotes th t
T61628 3990-3994 PR:000001006 denotes e re
T45644 3996-4007 CL:0000542 denotes ective grou
T49355 4073-4078 PR:000001092;GO:0032620 denotes nific
T76356 4079-4089 GO:0032620 denotes nt; ∗∗p <
T18711 4137-4142 UBERON:0002405 denotes e as
T74798 4143-4156 GO:0065007 denotes ollows: ALT,
T65161 4245-4255 SP_7 denotes notransfer
T20688 4284-4287 PR:000001004 denotes an
T1928 4288-4292 PR:000001006 denotes chr
T55211 4294-4305 CL:0000542 denotes ic health e
T81656 4319-4323 PR:000001006 denotes , Ch
T87232 4325-4336 CL:0000542 denotes lson’s como
T85579 4346-4350 PR:000001483 denotes dex;
T21243 4351-4355 PR:000001024 denotes INR,
T53498 4356-4360 PR:000001006 denotes inte
T56782 4362-4373 CL:0000542 denotes ational nor
T84027 4383-4387 PR:000001483 denotes tio;
T83216 4388-4392 PR:000001024 denotes PSI,
T41056 4393-4397 PR:000001006 denotes pneu
T91153 4414-4418 PR:000001002 denotes dex;
T83343 4419-4423 PR:000001006 denotes SD,
T84418 4425-4436 CL:0000542 denotes andard devi
T2298 4509-4518 NCBITaxon:7719 denotes patients
T63395 4519-4524 NCBITaxon:10239 denotes with
T93033 4558-4566 SP_7 denotes the tool
T14745 4582-4590 SP_7 denotes bacteria
T59526 4629-4634 UBERON:0002405;GO:0006955 denotes 0 ng/
T58621 4635-4645 GO:0042110 denotes L for MAS
T18082 4661-4674 GO:0065007 denotes t al., 2017),
T29233 4713-4716 PR:000001004 denotes lo
T34864 4717-4721 PR:000001006 denotes er t
T94440 4723-4734 CL:0000542 denotes n 5,000, in
T36159 4748-4752 PR:000001006 denotes f el
T68934 4754-4765 CL:0000542 denotes ated ferrit
T98249 4775-4779 PR:000001483 denotes e im
T23756 4781-4785 PR:000001024 denotes ne d
T95024 4786-4790 PR:000001006 denotes sreg
T10452 4792-4803 CL:0000542 denotes ation pheno
T64864 4813-4817 PR:000001483 denotes szew
T34718 4818-4822 PR:000001024 denotes cz e
T36171 4823-4827 PR:000001006 denotes  al.
T4616 4844-4848 PR:000001002 denotes ound
T58716 4849-4853 PR:000001006 denotes that
T17961 4855-4866 CL:0000542 denotes ontrary to
T7750 4898-4908 UBERON:0001004 denotes and SRF, a
T84754 4971-4980 NCBITaxon:7719 denotes tion or M
T72085 4981-4986 NCBITaxon:10239 denotes S (Ta
T18794 4991-4999 SP_7 denotes ). Tabl
T43119 5004-5006 PR:000001092 denotes ss
T6790 5006-5007 PR:000001092;GO:1990774 denotes o
T98296 5007-5009 PR:000001092;GO:0032620 denotes ci
T16142 5066-5073 NCBITaxon:5478 denotes ificati
T99218 5074-5082 NCBITaxon:8296 denotes n among
T387 5451-5461 SP_7 denotes 0001 ∗comp
T388 5491-5494 PR:000001004 denotes st.
T389 5495-5499 PR:000001006 denotes Abbr
T390 5501-5512 CL:0000542 denotes iation is a
T391 5526-5530 PR:000001006 denotes con
T392 5532-5543 CL:0000542 denotes dence inter

2_test

Id Subject Object Predicate Lexical cue
32320677-20037642-19656932 677-681 20037642 denotes 2009
32320677-20646008-19656933 704-708 20646008 denotes 2010
32320677-28918754-19656934 4668-4672 28918754 denotes 2017
32320677-19707128-19656935 4829-4833 19707128 denotes 2009

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
209 4-12 Species denotes Patients Tax:9606
210 55-65 Species denotes SARS-CoV-2 Tax:2697049
211 25-44 Disease denotes Respiratory Failure MESH:D012131
222 3569-3572 Gene denotes AST Gene:26503
223 2212-2222 Species denotes SARS-CoV-2 Tax:2697049
224 2241-2251 Species denotes SARS-CoV-2 Tax:2697049
225 2270-2278 Species denotes patients Tax:9606
226 3400-3410 Chemical denotes Creatinine MESH:D003404
227 2155-2174 Disease denotes respiratory failure MESH:D012131
228 2182-2201 Disease denotes respiratory failure MESH:D012131
229 3756-3773 Disease denotes diabetes mellitus MESH:D003920
230 3827-3848 Disease denotes Chronic heart failure MESH:D006333
231 3901-3923 Disease denotes Coronary heart disease MESH:D003324
233 2121-2130 Disease denotes Pneumonia MESH:D011014
239 4156-4180 Gene denotes alanine aminotransferase Gene:2875
240 4227-4230 Gene denotes AST Gene:26503
241 4018-4037 Disease denotes respiratory failure MESH:D012131
242 4393-4402 Disease denotes pneumonia MESH:D011014
243 4460-4473 Disease denotes organ failure MESH:D009102
284 174-184 Species denotes SARS-CoV-2 Tax:2697049
285 228-235 Species denotes patient Tax:9606
286 249-257 Species denotes patients Tax:9606
287 309-317 Species denotes patients Tax:9606
288 328-332 Species denotes H1N1 Tax:114727
289 351-359 Species denotes patients Tax:9606
290 379-389 Species denotes SARS-CoV-2 Tax:2697049
291 391-399 Species denotes Patients Tax:9606
292 553-561 Species denotes Patients Tax:9606
293 572-576 Species denotes H1N1 Tax:114727
294 743-751 Species denotes patients Tax:9606
295 883-891 Species denotes patients Tax:9606
296 994-1002 Species denotes patients Tax:9606
297 1284-1292 Species denotes patients Tax:9606
298 1458-1466 Species denotes patients Tax:9606
299 1549-1557 Species denotes patients Tax:9606
300 1578-1586 Species denotes patients Tax:9606
301 1749-1757 Species denotes patients Tax:9606
302 1807-1815 Species denotes patients Tax:9606
303 1941-1949 Species denotes patients Tax:9606
304 333-342 Species denotes influenza Tax:11309
305 577-586 Species denotes influenza Tax:11309
306 208-218 Disease denotes infections MESH:D007239
307 263-269 Disease denotes sepsis MESH:D018805
308 789-797 Disease denotes COVID-19 MESH:C000657245
309 848-854 Disease denotes sepsis MESH:D018805
310 859-867 Disease denotes COVID-19 MESH:C000657245
311 906-909 Disease denotes SRF
312 1008-1016 Disease denotes COVID-19 MESH:C000657245
313 1021-1024 Disease denotes SRF
314 1141-1154 Disease denotes organ failure MESH:D009102
315 1275-1283 Disease denotes COVID-19 MESH:C000657245
316 1355-1358 Disease denotes SRF
317 1472-1480 Disease denotes COVID-19 MESH:C000657245
318 1563-1566 Disease denotes SRF
319 1595-1598 Disease denotes SRF
320 1663-1669 Disease denotes sepsis MESH:D018805
321 1728-1732 Disease denotes Coma MESH:D003128
322 1821-1829 Disease denotes COVID-19 MESH:C000657245
323 1931-1939 Disease denotes COVID-19 MESH:C000657245
330 5164-5172 Species denotes patients Tax:9606
331 5188-5196 Species denotes patients Tax:9606
332 5178-5181 Disease denotes SRF
333 5244-5252 Disease denotes COVID-19 MESH:C000657245
334 5312-5332 Disease denotes 0001 Immunoparalysis
335 5383-5391 Disease denotes COVID-19 MESH:C000657245
341 5082-5090 Species denotes Patients Tax:9606
342 5109-5117 Species denotes Patients Tax:9606
343 5030-5049 Disease denotes Respiratory Failure MESH:D012131
344 5096-5104 Disease denotes COVID-19 MESH:C000657245
345 5123-5129 Disease denotes Sepsis MESH:D018805
355 4699-4703 Gene denotes CD14 Gene:929
356 4510-4518 Species denotes patients Tax:9606
357 4524-4534 Species denotes SARS-CoV-2 Tax:2697049
358 4870-4878 Species denotes patients Tax:9606
359 4911-4919 Species denotes patients Tax:9606
360 4933-4943 Species denotes SARS-CoV-2 Tax:2697049
361 4582-4598 Disease denotes bacterial sepsis MESH:D016920
362 4902-4905 Disease denotes SRF
363 4925-4928 Disease denotes SRF