PMC:7170415 / 4703-6247
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 99 | 56-66 | Species | denotes | SARS–CoV-2 | Tax:2697049 |
| 100 | 144-155 | Species | denotes | Coronavirus | Tax:11118 |
| 101 | 240-255 | Species | denotes | Betacoronavirus | Tax:694002 |
| 102 | 265-275 | Species | denotes | SARS Virus | Tax:694009 |
| 103 | 756-764 | Species | denotes | SARS-CoV | Tax:694009 |
| 104 | 951-956 | Species | denotes | human | Tax:9606 |
| 105 | 165-187 | Disease | denotes | Coronavirus Infections | MESH:D018352 |
| 106 | 197-230 | Disease | denotes | Severe Acute Respiratory Syndrome | MESH:D045169 |
| 107 | 743-748 | Disease | denotes | covid | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 393-403 | Body_part | denotes | Nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T2 | 528-544 | Body_part | denotes | Immunoglobulin G | http://purl.org/sig/ont/fma/fma62872 |
| T3 | 528-542 | Body_part | denotes | Immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T4 | 554-570 | Body_part | denotes | Immunoglobulin M | http://purl.org/sig/ont/fma/fma62873 |
| T5 | 554-568 | Body_part | denotes | Immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T6 | 868-882 | Body_part | denotes | Immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T29 | 56-60 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T30 | 197-230 | Disease | denotes | Severe Acute Respiratory Syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T31 | 265-269 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T32 | 750-754 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T33 | 756-764 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T36 | 104-112 | http://purl.obolibrary.org/obo/UBERON_0000033 | denotes | Headings |
| T37 | 104-112 | http://www.ebi.ac.uk/efo/EFO_0000964 | denotes | Headings |
| T38 | 270-275 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T39 | 475-482 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Testing |
| T40 | 771-778 | http://www.ebi.ac.uk/efo/EFO_0000881 | denotes | digital |
| T41 | 834-838 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T42 | 951-956 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T43 | 1221-1222 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T44 | 1456-1469 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizations |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T2 | 393-403 | Chemical | denotes | Nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T3 | 840-847 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 328-341 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | Transcriptase |
| T6 | 328-341 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | Transcriptase |
| T7 | 647-665 | http://purl.obolibrary.org/obo/GO_0099048 | denotes | CRISPR-Cas Systems |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T36 | 0-7 | Sentence | denotes | Methods |
| T37 | 8-83 | Sentence | denotes | We searched the PubMed database for articles on SARS–CoV-2 and diagnostics. |
| T38 | 84-710 | Sentence | denotes | The Medical Subject Headings (MeSH) search terms used were “Coronavirus”[MeSH]; “Coronavirus Infections”[MeSH]; “Severe Acute Respiratory Syndrome”[MeSH]; “Betacoronavirus”[MeSH]; “SARS Virus”[MeSH]; “Polymerase Chain Reaction”[MeSH]; “Reverse Transcriptase Polymerase Chain Reaction”[MeSH]; “High-Throughput Nucleotide Sequencing”[MeSH]; “Sensitivity and Specificity”[MeSH]; “Point-of-Care Testing”[MeSH]; “Antigens”[MeSH]; “Serology”[MeSH]; “Immunoglobulin G”[MeSH]; “Immunoglobulin M”[MeSH]; “Clustered Regularly Interspaced Short Palindromic Repeats”[MeSH]; “CRISPR-Cas Systems”[MESH]; and “Diagnosis, Differential”[MESH]. |
| T39 | 711-926 | Sentence | denotes | Non-MeSH search terms used were covid, SARS, SARS-CoV, pcr, digital droplet PCR, next generation sequencing, point-of-care test, antigen, analyte, serology, Immunoglobulin, CRISPR-CAS, Diagnos, and turn around time. |
| T40 | 927-1025 | Sentence | denotes | Only articles including human subjects and those published from 2003 to the present were included. |
| T41 | 1026-1091 | Sentence | denotes | Articles in languages other than English or French were excluded. |
| T42 | 1092-1163 | Sentence | denotes | We screened the results on title and abstract for relevant information. |
| T43 | 1164-1348 | Sentence | denotes | Starting from the articles found in this search, we used a snowball search strategy, scanning useful references and similar articles and retrieving those that were considered relevant. |
| T44 | 1349-1411 | Sentence | denotes | Furthermore, experts were consulted for additional literature. |
| T45 | 1412-1498 | Sentence | denotes | Guidelines and resources from international organizations were used where appropriate. |
| T46 | 1499-1544 | Sentence | denotes | This search was last updated on 1 April 2020. |