PMC:7170415 / 24670-25754
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 358 | 969-979 | Species | denotes | SARS–CoV-2 | Tax:2697049 |
| 359 | 788-813 | Chemical | denotes | phosphate-buffered saline |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T43 | 304-313 | Body_part | denotes | turbinate | http://purl.org/sig/ont/fma/fma57456 |
| T44 | 443-449 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
| T45 | 486-492 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T23 | 443-449 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
| T24 | 486-492 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T104 | 969-973 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T225 | 178-181 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T226 | 276-279 | http://purl.obolibrary.org/obo/CL_0000990 | denotes | CDC |
| T227 | 419-428 | http://purl.obolibrary.org/obo/UBERON_0001353 | denotes | posterior |
| T228 | 572-573 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T229 | 580-582 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T230 | 589-592 | http://purl.obolibrary.org/obo/CL_0000990 | denotes | CDC |
| T231 | 593-596 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T232 | 606-607 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T233 | 861-864 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T234 | 988-990 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
| T235 | 1027-1034 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T38 | 788-797 | Chemical | denotes | phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21 | 129-144 | http://purl.obolibrary.org/obo/GO_0046794 | denotes | viral transport |
| T22 | 135-144 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
| T23 | 674-689 | http://purl.obolibrary.org/obo/GO_0046794 | denotes | viral transport |
| T24 | 680-689 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
| T25 | 739-754 | http://purl.obolibrary.org/obo/GO_0046794 | denotes | viral transport |
| T26 | 745-754 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
| T27 | 940-949 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T172 | 0-73 | Sentence | denotes | Nasopharyngeal swabs are the recommended specimen for molecular analysis. |
| T173 | 74-251 | Sentence | denotes | The sudden demand for flocked nasopharyngeal swabs and viral transport medium generated by the pandemic has put enormous pressures on supply chain capacities for these products. |
| T174 | 252-404 | Sentence | denotes | As of 19 March 2020 the CDC made oropharyngeal, mid-turbinate, and nasal swabs acceptable specimen types if nasopharyngeal swabs are not available (31). |
| T175 | 405-584 | Sentence | denotes | Early-morning posterior oropharyngeal saliva samples (coughed up by clearing the throat) also have been assessed as useful specimen types and would not require use of a swab (48). |
| T176 | 585-852 | Sentence | denotes | The CDC has released a standard operating procedure for laboratories to create their own viral transport medium (64); other solutions also may be used if viral transport medium is unavailable, including phosphate-buffered saline, liquid Amies, and normal saline (65). |
| T177 | 853-992 | Sentence | denotes | The FDA has provided guidance on its Web site for alternative materials to collect and transport samples for RT-PCR SARS–CoV-2 assays (34). |
| T178 | 993-1084 | Sentence | denotes | The diagnostic value of molecular testing of nonrespiratory specimens currently is unclear. |