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PMC:7170415 / 19144-20610 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
280 73-76 Gene denotes IgG
281 81-91 Species denotes SARS–CoV-2 Tax:2697049
282 716-726 Species denotes SARS–CoV-2 Tax:2697049
283 727-738 Species denotes coronavirus Tax:11118
284 860-865 Species denotes human Tax:9606
285 866-879 Species denotes coronaviruses Tax:11118
286 948-956 Species denotes patients Tax:9606
287 342-358 Disease denotes acute infections MESH:D007239
288 502-511 Disease denotes infection MESH:D007239
289 598-618 Disease denotes SARS–CoV-2 infection MESH:C000657245
290 839-848 Disease denotes infection MESH:D007239
291 986-1015 Disease denotes late complications of disease MESH:D002493
294 1190-1200 Species denotes SARS–CoV-2 Tax:2697049
295 1164-1173 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T26 59-62 Body_part denotes IgA http://purl.org/sig/ont/fma/fma62874
T27 64-67 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T28 73-76 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T29 125-130 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T30 134-140 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T31 480-488 Body_part denotes Antibody http://purl.org/sig/ont/fma/fma62871
T32 700-708 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T33 739-747 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T15 125-130 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T16 134-140 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T80 81-85 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T81 348-358 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T82 502-511 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T83 598-602 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 609-618 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T85 716-720 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T86 839-848 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T87 1164-1173 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T88 1190-1194 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T182 19-24 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T183 125-130 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T184 125-130 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T185 222-227 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T186 673-678 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T187 756-757 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T188 860-865 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T189 1094-1096 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T23 739-747 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T18 418-432 http://purl.obolibrary.org/obo/GO_0019076 denotes viral shedding
T19 1062-1076 http://purl.obolibrary.org/obo/GO_0019076 denotes viral shedding

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T135 0-8 Sentence denotes Serology
T136 9-303 Sentence denotes Serologic tests that identify antibodies (such as IgA, IgM, and IgG) to SARS–CoV-2 from clinical specimens (such as blood or saliva), such as enzyme-linked immunosorbent assays, may be less complex than molecular tests and have the potential to be used for diagnosis in certain situations (46).
T137 304-479 Sentence denotes However, their utility for diagnosing acute infections is probably limited around the time of symptom onset, when viral shedding and transmission risk seem to be highest (32).
T138 480-562 Sentence denotes Antibody responses to infection take days to weeks to be reliably detectable (46).
T139 563-679 Sentence denotes Negative results would not exclude SARS–CoV-2 infection, particularly among those with recent exposure to the virus.
T140 680-885 Sentence denotes Cross-reactivity of antibody to non–SARS–CoV-2 coronavirus proteins is also a potential problem, whereby positive results may be the result of past or present infection with other human coronaviruses (47).
T141 886-1098 Sentence denotes Serologic assays might be more relevant in scenarios in which patients present to medical care with late complications of disease, when RT-PCR may be falsely negative, because viral shedding drops over time (48).
T142 1099-1344 Sentence denotes The development of serologic assays that accurately assess prior infection and immunity to SARS–CoV-2 will be essential for epidemiologic studies, ongoing surveillance, vaccine studies, and potentially for risk assessment of health care workers.
T143 1345-1466 Sentence denotes Immunoassays are already on the market in some countries, but their diagnostic accuracy and optimal use remain undefined.