PMC:7166029 / 9328-10608
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 223 | 48-56 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 228 | 870-903 | Gene | denotes | Whole blood 0 1 / / / / Tear 0 10 | |
| 229 | 548-565 | Species | denotes | Influenza A Virus | Tax:11320 |
| 230 | 566-583 | Species | denotes | Influenza B Virus | Tax:11520 |
| 231 | 539-547 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 240 | 416-433 | Gene | denotes | influenza A and B | |
| 241 | 123-130 | Species | denotes | patient | Tax:9606 |
| 242 | 243-251 | Species | denotes | patients | Tax:9606 |
| 243 | 345-353 | Species | denotes | patients | Tax:9606 |
| 244 | 402-410 | Species | denotes | patients | Tax:9606 |
| 245 | 59-67 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 246 | 171-179 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 247 | 271-279 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 251 | 1119-1136 | Gene | denotes | influenza A and B | |
| 252 | 965-973 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 253 | 1167-1175 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T71 | 213-218 | Body_part | denotes | stool | http://purl.org/sig/ont/fma/fma64183 |
| T72 | 315-319 | Body_part | denotes | tear | http://purl.org/sig/ont/fma/fma59756 |
| T73 | 741-746 | Body_part | denotes | Feces | http://purl.org/sig/ont/fma/fma64183 |
| T74 | 765-770 | Body_part | denotes | Serum | http://purl.org/sig/ont/fma/fma63083 |
| T75 | 796-802 | Body_part | denotes | Sputum | http://purl.org/sig/ont/fma/fma312401 |
| T76 | 876-881 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T77 | 894-898 | Body_part | denotes | Tear | http://purl.org/sig/ont/fma/fma59756 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T35 | 213-218 | Body_part | denotes | stool | http://purl.obolibrary.org/obo/UBERON_0001988 |
| T36 | 741-746 | Body_part | denotes | Feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
| T37 | 765-770 | Body_part | denotes | Serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T38 | 796-802 | Body_part | denotes | Sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T39 | 876-881 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T67 | 48-56 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T68 | 59-67 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T69 | 171-179 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T70 | 271-279 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T71 | 416-425 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T72 | 539-547 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T73 | 548-557 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T74 | 566-575 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T75 | 965-973 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T76 | 1119-1128 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T77 | 1167-1175 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T103 | 57-58 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T104 | 426-427 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T105 | 432-433 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T106 | 509-513 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T107 | 558-559 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T108 | 560-565 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T109 | 576-577 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T110 | 578-583 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T111 | 606-610 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
| T112 | 639-643 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
| T113 | 672-676 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
| T114 | 876-881 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T115 | 876-881 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T116 | 1129-1130 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T117 | 1135-1136 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T118 | 1137-1144 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T78 | 22-34 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T79 | 30-34 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T80 | 68-80 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T81 | 76-80 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T82 | 180-192 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T83 | 188-192 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T84 | 280-293 | Chemical | denotes | nucleic acids | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T85 | 288-293 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T86 | 496-508 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T87 | 504-508 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T88 | 934-946 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T89 | 942-946 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T90 | 1242-1254 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T91 | 1250-1254 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T85 | 0-56 | Sentence | denotes | 3.1 Data analysis of nucleic acid detection of COVID-19 |
| T86 | 57-141 | Sentence | denotes | A COVID-19 nucleic acid was detected in 32 swabs collected during patient screening. |
| T87 | 142-170 | Sentence | denotes | The detection rate was 1.3%. |
| T88 | 171-261 | Sentence | denotes | COVID-19 nucleic acid was detected in the stool specimens of 8 positive patients examined. |
| T89 | 262-354 | Sentence | denotes | However, COVID-19 nucleic acids were not detected in tear samples from 10 positive patients. |
| T90 | 355-478 | Sentence | denotes | During the same period, the detection rates of patients with influenza A and B were 2.3% and 3.3%, respectively (Table 2 ). |
| T91 | 479-524 | Sentence | denotes | Table 2 Types of nucleic acid test specimens. |
| T92 | 525-583 | Sentence | denotes | Specimen type COVID-19 Influenza A Virus Influenza B Virus |
| T93 | 584-682 | Sentence | denotes | Positive cases-No., % Test cases Positive cases-No., % Test cases Positive cases-No., % Test cases |
| T94 | 683-740 | Sentence | denotes | Pharyngeal swab 32 (1.3) 2510 57 (2.3) 2510 84 (3.3) 2510 |
| T95 | 741-764 | Sentence | denotes | Feces 8 (19) 43 0 6 0 6 |
| T96 | 765-795 | Sentence | denotes | Serum 0 31 2 (13) 15 2 (13) 15 |
| T97 | 796-817 | Sentence | denotes | Sputum 0 15 0 15 0 15 |
| T98 | 818-846 | Sentence | denotes | Bronchial lavage 0 1 0 1 0 1 |
| T99 | 847-869 | Sentence | denotes | Nasal swab 0 6 / / / / |
| T100 | 870-893 | Sentence | denotes | Whole blood 0 1 / / / / |
| T101 | 894-911 | Sentence | denotes | Tear 0 10 / / / / |
| T102 | 912-1093 | Sentence | denotes | Fig. 1 shows that the nucleic acid-positive cases of COVID-19 were mainly detected from January 24 to February 9, with February 3 and 4 showing the largest number of positive cases. |
| T103 | 1094-1163 | Sentence | denotes | During this period, both influenza A and B viruses were also present. |
| T104 | 1164-1223 | Sentence | denotes | No COVID-19-positive cases were detected after February 10. |
| T105 | 1224-1280 | Sentence | denotes | Fig. 1 Changes of nucleic acid positive cases with time. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T190 | 22-29 | GO:0005634 | denotes | nucleic |
| T191 | 48-56 | SP_7 | denotes | COVID-19 |
| T192 | 59-67 | SP_7 | denotes | COVID-19 |
| T193 | 68-75 | GO:0005634 | denotes | nucleic |
| T194 | 171-179 | SP_7 | denotes | COVID-19 |
| T195 | 180-187 | GO:0005634 | denotes | nucleic |
| T196 | 213-218 | UBERON:0001988 | denotes | stool |
| T197 | 271-279 | SP_7 | denotes | COVID-19 |
| T198 | 280-287 | GO:0005634 | denotes | nucleic |
| T201 | 496-503 | GO:0005634 | denotes | nucleic |
| T202 | 934-941 | GO:0005634 | denotes | nucleic |
| T203 | 965-973 | SP_7 | denotes | COVID-19 |
| T204 | 1119-1128 | NCBITaxon:7719 | denotes | influenza |
| T205 | 1137-1144 | NCBITaxon:10239 | denotes | viruses |
| T206 | 1167-1175 | SP_7 | denotes | COVID-19 |
| T207 | 1242-1249 | GO:0005634 | denotes | nucleic |
| T20807 | 67-76 | SP_7 | denotes | nucleic |
| T61730 | 77-83 | GO:0005634 | denotes | cid wa |
| T93353 | 109-114 | UBERON:0001988 | denotes | lecte |
| T66017 | 167-175 | SP_7 | denotes | 3%. COVI |
| T51944 | 176-183 | GO:0005634 | denotes | -19 nuc |
| T199 | 391-397 | GO:0005634 | denotes | n rate |
| T200 | 716-723 | UBERON:0000178 | denotes | (2.3) 2 |
| T46475 | 756-762 | GO:0005634 | denotes | 0 6 0 |
| T98722 | 806-812 | GO:0005634 | denotes | 5 0 15 |
| T6805 | 838-846 | SP_7 | denotes | 0 1 0 1 |
| T59510 | 991-1000 | NCBITaxon:7719 | denotes | ted from |
| T23270 | 1010-1017 | NCBITaxon:10239 | denotes | to Feb |
| T12405 | 1040-1048 | SP_7 | denotes | 3 and 4 |
| T55726 | 1114-1120 | GO:0005634 | denotes | both i |
| T208 | 1170-1176 | GO:0005634 | denotes | ID-19- |
| T45757 | 1255-1263 | SP_7 | denotes | positive |