PMC:7166029 / 4778-7159
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 172 | 651-668 | Gene | denotes | influenza A and B | |
| 173 | 1621-1638 | Gene | denotes | influenza A and B | |
| 174 | 434-451 | Gene | denotes | influenza A and B | |
| 175 | 1465-1482 | Species | denotes | influenza A virus | Tax:11320 |
| 176 | 1484-1501 | Species | denotes | influenza B virus | Tax:11520 |
| 177 | 1503-1523 | Species | denotes | Chlamydia pneumoniae | Tax:83558 |
| 178 | 1525-1546 | Species | denotes | Mycoplasma pneumoniae | Tax:2104 |
| 179 | 1548-1569 | Species | denotes | Staphylococcus aureus | Tax:1280 |
| 180 | 2309-2329 | Species | denotes | Chlamydia pneumoniae | Tax:83558 |
| 181 | 2331-2352 | Species | denotes | Mycoplasma pneumoniae | Tax:2104 |
| 182 | 2354-2375 | Species | denotes | Staphylococcus aureus | Tax:1280 |
| 183 | 1304-1317 | Chemical | denotes | Runhou tablet | |
| 184 | 1349-1367 | Chemical | denotes | hydroxymethozoline | |
| 185 | 2149-2162 | Chemical | denotes | Runhou tablet | |
| 186 | 2194-2212 | Chemical | denotes | hydroxymethozoline | |
| 187 | 4-12 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 188 | 561-569 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 189 | 776-784 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T15 | 410-414 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T16 | 1259-1264 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T17 | 2104-2109 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T7 | 1259-1264 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T8 | 2104-2109 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T49 | 4-12 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T50 | 434-443 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T51 | 561-569 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T52 | 651-660 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T53 | 776-784 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T54 | 1465-1474 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T55 | 1484-1493 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T56 | 1503-1523 | Disease | denotes | Chlamydia pneumoniae | http://purl.obolibrary.org/obo/MONDO_0025598 |
| T57 | 1525-1546 | Disease | denotes | Mycoplasma pneumoniae | http://purl.obolibrary.org/obo/MONDO_0005867 |
| T58 | 1621-1630 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T59 | 2309-2329 | Disease | denotes | Chlamydia pneumoniae | http://purl.obolibrary.org/obo/MONDO_0025598 |
| T60 | 2331-2352 | Disease | denotes | Mycoplasma pneumoniae | http://purl.obolibrary.org/obo/MONDO_0005867 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T50 | 26-30 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T51 | 53-58 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T52 | 147-148 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T53 | 274-283 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes are |
| T54 | 401-402 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T55 | 410-414 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T56 | 444-445 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T57 | 450-451 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T58 | 465-469 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T59 | 661-662 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T60 | 667-668 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T61 | 816-820 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T62 | 1075-1084 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organized |
| T63 | 1106-1110 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T64 | 1210-1214 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T65 | 1253-1264 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | whole blood |
| T66 | 1253-1264 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | whole blood |
| T67 | 1398-1402 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T68 | 1421-1424 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T69 | 1475-1476 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T70 | 1477-1482 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T71 | 1494-1495 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T72 | 1496-1501 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T73 | 1631-1632 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T74 | 1637-1638 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T75 | 1639-1644 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T76 | 1674-1678 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T77 | 1919-1926 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T78 | 2055-2059 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T79 | 2098-2109 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | whole blood |
| T80 | 2098-2109 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | whole blood |
| T81 | 2243-2247 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T82 | 2265-2268 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T21 | 13-25 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T22 | 21-25 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T23 | 79-91 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T24 | 87-91 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T25 | 452-464 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T26 | 460-464 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T27 | 615-617 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
| T28 | 704-706 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
| T29 | 1318-1326 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
| T30 | 1368-1376 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
| T31 | 2163-2171 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
| T32 | 2213-2221 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 1272-1281 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
| T6 | 2117-2126 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T58 | 0-146 | Sentence | denotes | The COVID-19 nucleic acid test detects the N and 1ab genes, and the quality of nucleic acid extraction is monitored by using an internal standard. |
| T59 | 147-264 | Sentence | denotes | A positive quality control, weak positive quality control, and two negative quality controls in each batch were used. |
| T60 | 265-400 | Sentence | denotes | When two genes are are amplified and the cycle threshold (CT) value is below the detection limit, the result is considered as positive. |
| T61 | 401-556 | Sentence | denotes | A single gene is detected in the influenza A and B nucleic acid test; when the CT value is below the detection limit, the result is considered as positive. |
| T62 | 557-731 | Sentence | denotes | The COVID-19 kit was provided by Hunan Shengxiang Biology Co., Ltd. (Changsha, China) and the influenza A and B kit was provided by Jiangsu Master Co., Ltd. (Jiangsu, China). |
| T63 | 732-805 | Sentence | denotes | The performance verification results of the COVID-19 kit were as follows: |
| T64 | 806-928 | Sentence | denotes | Precision test showed that the kit had good repeatability and the coefficient of variation (CV, %) of CT was less than 5%. |
| T65 | 929-1146 | Sentence | denotes | Due to the consideration of biosafety, we did not verify the accuracy, but our laboratory participated in the inter laboratory quality assessment organized by Shanghai clinical test center, and all the results passed. |
| T66 | 1147-1192 | Sentence | denotes | The sensitivity of this kit is 200 copies/ml. |
| T67 | 1193-1411 | Sentence | denotes | The interference test showed that the 10% (volume ratio) of whole blood, nasal secretion, 10% concentration of Runhou tablet solution, 10% concentration of hydroxymethozoline solution had no effect on the test results. |
| T68 | 1412-1580 | Sentence | denotes | This kit has no cross reaction with cytomegalovirus, influenza A virus, influenza B virus, Chlamydia pneumoniae, Mycoplasma pneumoniae, Staphylococcus aureus and so on. |
| T69 | 1581-1829 | Sentence | denotes | The performance verification results of influenza A and B virus kit are as follows:Precision test shows that the detection repeatability of the kit is good, and the coefficient of variation (CV, %) of detection CT value is less than or equal to 5%. |
| T70 | 1830-1986 | Sentence | denotes | The accuracy results show that the negative and positive compliance rate is 100% through testing enterprise reference/international standard (or reference). |
| T71 | 1987-2037 | Sentence | denotes | The sensitivity of this kit is 1.00e+04 copies/ml. |
| T72 | 2038-2256 | Sentence | denotes | The interference test showed that the 10% (volume ratio) of whole blood, nasal secretion, 10% concentration of Runhou tablet solution, 10% concentration of hydroxymethozoline solution had no effect on the test results. |
| T73 | 2257-2381 | Sentence | denotes | The kit has no cross reaction with cytomegalovirus, Chlamydia pneumoniae, Mycoplasma pneumoniae, Staphylococcus aureus, etc. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T9 | 1513-1523 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
| T10 | 1536-1546 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
| T11 | 2319-2329 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
| T12 | 2342-2352 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T88 | 4-12 | SP_7 | denotes | COVID-19 |
| T89 | 13-20 | GO:0005634 | denotes | nucleic |
| T90 | 53-58 | SO:0000704 | denotes | genes |
| T91 | 79-86 | GO:0005634 | denotes | nucleic |
| T92 | 274-279 | SO:0000704 | denotes | genes |
| T93 | 410-414 | SO:0000704 | denotes | gene |
| T94 | 452-459 | GO:0005634 | denotes | nucleic |
| T95 | 561-569 | SP_7 | denotes | COVID-19 |
| T96 | 776-784 | SP_7 | denotes | COVID-19 |
| T97 | 1259-1264 | UBERON:0000178 | denotes | blood |
| T98 | 1266-1271 | UBERON:0000004 | denotes | nasal |
| T99 | 1318-1326 | CHEBI:75958;CHEBI:75958 | denotes | solution |
| T100 | 1349-1367 | CHEBI:24751;CHEBI:24751 | denotes | hydroxymethozoline |
| T101 | 1368-1376 | CHEBI:75958;CHEBI:75958 | denotes | solution |
| T102 | 1448-1463 | NCBITaxon:10358 | denotes | cytomegalovirus |
| T103 | 1465-1476 | NCBITaxon:7719 | denotes | influenza A |
| T104 | 1477-1482 | NCBITaxon:10239 | denotes | virus |
| T105 | 1484-1495 | NCBITaxon:7719 | denotes | influenza B |
| T106 | 1496-1501 | NCBITaxon:10239 | denotes | virus |
| T107 | 1503-1512 | NCBITaxon:7719 | denotes | Chlamydia |
| T108 | 1513-1523 | NCBITaxon:7668 | denotes | pneumoniae |
| T109 | 1525-1535 | NCBITaxon:7719 | denotes | Mycoplasma |
| T110 | 1536-1546 | NCBITaxon:7668 | denotes | pneumoniae |
| T111 | 1548-1562 | NCBITaxon:7668 | denotes | Staphylococcus |
| T112 | 1563-1569 | NCBITaxon:1280 | denotes | aureus |
| T113 | 1639-1644 | NCBITaxon:10239 | denotes | virus |
| T114 | 2104-2109 | UBERON:0000178 | denotes | blood |
| T115 | 2111-2116 | UBERON:0000004 | denotes | nasal |
| T116 | 2163-2171 | CHEBI:75958;CHEBI:75958 | denotes | solution |
| T117 | 2194-2212 | CHEBI:24751;CHEBI:24751 | denotes | hydroxymethozoline |
| T118 | 2213-2221 | CHEBI:75958;CHEBI:75958 | denotes | solution |
| T119 | 2292-2307 | NCBITaxon:10358 | denotes | cytomegalovirus |
| T120 | 2309-2318 | NCBITaxon:7668 | denotes | Chlamydia |
| T121 | 2319-2329 | NCBITaxon:83558 | denotes | pneumoniae |
| T122 | 2331-2352 | NCBITaxon:2104 | denotes | Mycoplasma pneumoniae |
| T123 | 2354-2368 | NCBITaxon:7668 | denotes | Staphylococcus |
| T124 | 2369-2375 | NCBITaxon:1280 | denotes | aureus |
| T50991 | 171-176 | SO:0000704 | denotes | ol, w |
| T42201 | 307-311 | SO:0000704 | denotes | ycle |
| T68593 | 349-355 | GO:0005634 | denotes | ection |
| T52430 | 458-466 | SP_7 | denotes | c acid t |
| T67915 | 671-679 | SP_7 | denotes | t was pr |
| T98060 | 1155-1160 | UBERON:0000178 | denotes | itivi |
| T45294 | 1162-1167 | UBERON:0000004 | denotes | of t |
| T40682 | 1215-1223 | CHEBI:75958;CHEBI:75958 | denotes | showed t |
| T14307 | 1246-1264 | CHEBI:24751;CHEBI:24751 | denotes | io) of whole blood |
| T64951 | 1265-1273 | CHEBI:75958;CHEBI:75958 | denotes | nasal s |
| T26920 | 1345-1356 | NCBITaxon:10358 | denotes | of hydroxy |
| T61883 | 1358-1369 | NCBITaxon:7719 | denotes | thozoline s |
| T63255 | 1370-1375 | NCBITaxon:10239 | denotes | lutio |
| T5757 | 1377-1388 | NCBITaxon:7719 | denotes | had no effe |
| T12536 | 1389-1394 | NCBITaxon:10239 | denotes | t on |
| T47210 | 1396-1405 | NCBITaxon:7719 | denotes | e test re |
| T9008 | 1406-1416 | NCBITaxon:7668 | denotes | ults. This |
| T45807 | 1418-1428 | NCBITaxon:7719 | denotes | it has no |
| T90604 | 1429-1439 | NCBITaxon:7668 | denotes | ross react |
| T51011 | 1441-1459 | NCBITaxon:7668 | denotes | n with cytomegalov |
| T45437 | 1460-1466 | NCBITaxon:1280 | denotes | rus, i |
| T44898 | 1536-1541 | NCBITaxon:10239 | denotes | pneum |
| T65149 | 2000-2005 | UBERON:0000178 | denotes | ty of |
| T49338 | 2007-2012 | UBERON:0000004 | denotes | his k |
| T44847 | 2060-2068 | CHEBI:75958;CHEBI:75958 | denotes | showed t |
| T77694 | 2091-2109 | CHEBI:24751;CHEBI:24751 | denotes | io) of whole blood |
| T77916 | 2110-2118 | CHEBI:75958;CHEBI:75958 | denotes | nasal s |
| T63301 | 2189-2200 | NCBITaxon:10358 | denotes | n of hydrox |
| T82713 | 2202-2211 | NCBITaxon:7668 | denotes | ethozolin |
| T45923 | 2212-2222 | NCBITaxon:83558 | denotes | solution |
| T31982 | 2224-2245 | NCBITaxon:2104 | denotes | d no effect on the te |
| T96332 | 2247-2261 | NCBITaxon:7668 | denotes | results. The |
| T94433 | 2262-2268 | NCBITaxon:1280 | denotes | it has |
| T84842 | 2315-2320 | UBERON:0000178 | denotes | dia p |
| T19562 | 2340-2348 | SP_7 | denotes | a pneumo |