PMC:7164859 / 2022-3939
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 50 | 152-180 | Species | denotes | human immunodeficiency virus | Tax:12721 |
| 51 | 188-205 | Species | denotes | hepatitis B virus | Tax:10407 |
| 52 | 213-219 | Species | denotes | bovine | Tax:9913 |
| 53 | 240-261 | Species | denotes | human papilloma virus | Tax:10566 |
| 54 | 182-185 | Species | denotes | HIV | Tax:12721 |
| 55 | 207-210 | Species | denotes | HBV | Tax:10407 |
| 56 | 263-266 | Species | denotes | HPV | Tax:10566 |
| 57 | 388-391 | Species | denotes | HPV | Tax:10566 |
| 58 | 220-235 | Disease | denotes | papilloma virus | MESH:D010212 |
| 59 | 426-436 | Disease | denotes | condylomas | MESH:D062688 |
| 60 | 462-476 | Disease | denotes | papillomatosis | MESH:D010212 |
| 61 | 495-515 | Disease | denotes | occupational illness | MESH:D009784 |
| 62 | 688-692 | Disease | denotes | HIVs | |
| 63 | 806-810 | Disease | denotes | HIVs | |
| 68 | 1081-1089 | Species | denotes | patients | Tax:9606 |
| 69 | 930-933 | Species | denotes | HPV | Tax:10566 |
| 70 | 938-941 | Species | denotes | HIV | Tax:12721 |
| 71 | 1072-1080 | Disease | denotes | infected | MESH:D007239 |
| 73 | 1190-1197 | Species | denotes | patient | Tax:9606 |
| 79 | 1537-1540 | Species | denotes | HBV | Tax:10407 |
| 80 | 1704-1707 | Species | denotes | HBV | Tax:10407 |
| 81 | 1774-1777 | Species | denotes | HBV | Tax:10407 |
| 82 | 1638-1654 | Disease | denotes | pneumoperitoneum | MESH:D011027 |
| 83 | 1781-1797 | Disease | denotes | pneumoperitoneum | MESH:D011027 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T4 | 182-185 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T5 | 625-628 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T6 | 712-716 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T7 | 938-941 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T8 | 1373-1377 | Body_part | denotes | skin | http://purl.org/sig/ont/fma/fma7163 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 1126-1131 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
| T2 | 1373-1377 | Body_part | denotes | skin | http://purl.obolibrary.org/obo/UBERON_0000014 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T2 | 158-174 | Disease | denotes | immunodeficiency | http://purl.obolibrary.org/obo/MONDO_0021094 |
| T3 | 188-199 | Disease | denotes | hepatitis B | http://purl.obolibrary.org/obo/MONDO_0005344 |
| T4 | 188-197 | Disease | denotes | hepatitis | http://purl.obolibrary.org/obo/MONDO_0002251 |
| T5 | 220-229 | Disease | denotes | papilloma | http://purl.obolibrary.org/obo/MONDO_0002363 |
| T6 | 246-255 | Disease | denotes | papilloma | http://purl.obolibrary.org/obo/MONDO_0002363 |
| T7 | 452-476 | Disease | denotes | laryngeal papillomatosis | http://purl.obolibrary.org/obo/MONDO_0023597 |
| T8 | 462-476 | Disease | denotes | papillomatosis | http://purl.obolibrary.org/obo/MONDO_0002363|http://purl.obolibrary.org/obo/MONDO_0021098 |
| T10 | 652-666 | Disease | denotes | infectiousness | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12 | 57-64 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T13 | 152-157 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T14 | 175-180 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T15 | 198-199 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T16 | 200-205 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T17 | 230-235 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T18 | 240-245 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T19 | 256-261 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T20 | 377-384 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focused |
| T21 | 607-615 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T22 | 712-716 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T23 | 762-769 | http://purl.obolibrary.org/obo/OBI_0000968 | denotes | devices |
| T24 | 884-887 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T25 | 912-918 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4], [5 |
| T26 | 1166-1167 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T27 | 1188-1189 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T28 | 1373-1377 | http://purl.obolibrary.org/obo/UBERON_0000014 | denotes | skin |
| T29 | 1373-1377 | http://purl.obolibrary.org/obo/UBERON_0001003 | denotes | skin |
| T30 | 1373-1377 | http://purl.obolibrary.org/obo/UBERON_0002097 | denotes | skin |
| T31 | 1373-1377 | http://purl.obolibrary.org/obo/UBERON_0002199 | denotes | skin |
| T32 | 1373-1377 | http://www.ebi.ac.uk/efo/EFO_0000962 | denotes | skin |
| T33 | 1508-1510 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T34 | 1670-1671 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T35 | 1731-1733 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T9 | 625-628 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 0-48 | Sentence | denotes | Risk of viral contamination during surgical care |
| T19 | 49-268 | Sentence | denotes | Several viruses have been implicated to different degrees in the contamination of HCPs during surgery: human immunodeficiency virus (HIV), hepatitis B virus (HBV), bovine papilloma virus and human papilloma virus (HPV). |
| T20 | 269-355 | Sentence | denotes | Most of the studies published on the risk of transmission have used in vitro analyses. |
| T21 | 356-533 | Sentence | denotes | Several studies have focused on HPV (during the treatment of warts or condylomas) with cases of laryngeal papillomatosis, recognised as an occupational illness in one nurse [2]. |
| T22 | 534-671 | Sentence | denotes | In the 2000s, it was difficult for researchers to measure the biological activity of viral DNA in order to assess its infectiousness [3]. |
| T23 | 672-920 | Sentence | denotes | However, viable HIVs have been found in cell cultures, especially when aerosol-generating devices are used, although the viability of HIVs is still being debated, and the potential risk of contamination by smoke has not been quantifiable. [4], [5]. |
| T24 | 921-1090 | Sentence | denotes | For both HPV and HIV, most authors conclude, however, that it is preferable to take all necessary precautions against surgical smoke when operating on infected patients. |
| T25 | 1091-1267 | Sentence | denotes | There is to our knowledge no large-scale epidemiological study that proves a direct link between a patient's viral load and the contamination of HCPs by emitted surgical smoke. |
| T26 | 1268-1397 | Sentence | denotes | It should also be noted that the published studies have mainly been on surgical smoke from operations on skin or genital lesions. |
| T27 | 1398-1478 | Sentence | denotes | Few studies have evaluated the risk of contamination of HCPs during laparoscopy. |
| T28 | 1479-1616 | Sentence | denotes | One small-sample study (n = 11) analysed the presence of HBV in surgical smoke during conventional and robot-assisted laparoscopies [6]. |
| T29 | 1617-1734 | Sentence | denotes | The aerosol from the pneumoperitoneum was trapped in a filter, where the authors found HBV in 10 instances out of 11. |
| T30 | 1735-1830 | Sentence | denotes | This study thus showed the presence of HBV in pneumoperitoneum gas during surgical laparoscopy. |
| T31 | 1831-1917 | Sentence | denotes | The subject matter of this study comes closest to the issue addressed in this article. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 158-174 | Phenotype | denotes | immunodeficiency | http://purl.obolibrary.org/obo/HP_0002721 |
| T2 | 188-197 | Phenotype | denotes | hepatitis | http://purl.obolibrary.org/obo/HP_0012115 |
| T3 | 220-229 | Phenotype | denotes | papilloma | http://purl.obolibrary.org/obo/HP_0012740 |
| T4 | 246-255 | Phenotype | denotes | papilloma | http://purl.obolibrary.org/obo/HP_0012740 |
| T5 | 417-422 | Phenotype | denotes | warts | http://purl.obolibrary.org/obo/HP_0200043 |
| T6 | 452-476 | Phenotype | denotes | laryngeal papillomatosis | http://purl.obolibrary.org/obo/HP_0033001 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29 | 8-13 | NCBITaxon:10239 | denotes | viral |
| T30 | 57-64 | NCBITaxon:10239 | denotes | viruses |
| T31 | 152-157 | SP_6;NCBITaxon:9606 | denotes | human |
| T32 | 175-180 | NCBITaxon:10376 | denotes | virus |
| T33 | 188-205 | NCBITaxon:10376 | denotes | hepatitis B virus |
| T34 | 207-210 | NCBITaxon:10376 | denotes | HBV |
| T35 | 213-219 | NCBITaxon:27592 | denotes | bovine |
| T36 | 230-235 | NCBITaxon:10239 | denotes | virus |
| T37 | 240-245 | SP_6;NCBITaxon:9606 | denotes | human |
| T38 | 256-261 | NCBITaxon:10239 | denotes | virus |
| T39 | 263-266 | NCBITaxon:11886 | denotes | HPV |
| T40 | 452-461 | UBERON:0001737 | denotes | laryngeal |
| T41 | 619-624 | NCBITaxon:10239 | denotes | viral |
| T42 | 930-933 | NCBITaxon:11886 | denotes | HPV |
| T43 | 1200-1205 | NCBITaxon:10239 | denotes | viral |
| T44 | 1381-1388 | UBERON:3011048 | denotes | genital |
| T45 | 1537-1540 | NCBITaxon:10376 | denotes | HBV |
| T46 | 1638-1654 | UBERON:0001179 | denotes | pneumoperitoneum |
| T47 | 1704-1707 | NCBITaxon:10376 | denotes | HBV |
| T48 | 1774-1777 | NCBITaxon:10376 | denotes | HBV |
| T49 | 1781-1797 | UBERON:0001179 | denotes | pneumoperitoneum |
| T39152 | 8-13 | NCBITaxon:10239 | denotes | viral |
| T46535 | 57-64 | NCBITaxon:10239 | denotes | viruses |
| T98426 | 152-157 | SP_6;NCBITaxon:9606 | denotes | human |
| T25112 | 175-180 | NCBITaxon:10376 | denotes | virus |
| T47901 | 188-205 | NCBITaxon:10376 | denotes | hepatitis B virus |
| T58132 | 207-210 | NCBITaxon:10376 | denotes | HBV |
| T68740 | 213-219 | NCBITaxon:27592 | denotes | bovine |
| T52184 | 230-235 | NCBITaxon:10239 | denotes | virus |
| T98655 | 240-245 | SP_6;NCBITaxon:9606 | denotes | human |
| T86739 | 256-261 | NCBITaxon:10239 | denotes | virus |
| T8455 | 263-266 | NCBITaxon:11886 | denotes | HPV |
| T8454 | 452-461 | UBERON:0001737 | denotes | laryngeal |
| T373 | 619-624 | NCBITaxon:10239 | denotes | viral |
| T69827 | 930-933 | NCBITaxon:11886 | denotes | HPV |
| T48460 | 1200-1205 | NCBITaxon:10239 | denotes | viral |
| T9031 | 1381-1388 | UBERON:3011048 | denotes | genital |
| T26796 | 1537-1540 | NCBITaxon:10376 | denotes | HBV |
| T83087 | 1638-1654 | UBERON:0001179 | denotes | pneumoperitoneum |
| T58298 | 1704-1707 | NCBITaxon:10376 | denotes | HBV |
| T86710 | 1774-1777 | NCBITaxon:10376 | denotes | HBV |
| T36693 | 1781-1797 | UBERON:0001179 | denotes | pneumoperitoneum |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32340900-14634897-65536310 | 530-531 | 14634897 | denotes | 2 |
| 32340900-12374535-65536311 | 668-669 | 12374535 | denotes | 3 |
| 32340900-1901908-65536312 | 912-913 | 1901908 | denotes | 4 |
| 32340900-9685533-65536313 | 917-918 | 9685533 | denotes | 5 |
| 32340900-27484956-65536314 | 1613-1614 | 27484956 | denotes | 6 |