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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 36-43 Species denotes Patient Tax:9606
3 6-30 Disease denotes Coronavirus Disease 2019 MESH:C000657245
9 282-299 Species denotes novel coronavirus Tax:2697049
10 309-356 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
11 358-368 Species denotes SARS-CoV-2 Tax:2697049
12 149-162 Disease denotes viral illness
13 265-274 Disease denotes infection MESH:D007239
15 1682-1702 Disease denotes multifocal pneumonia
36 459-466 Species denotes patient Tax:9606
37 526-533 Species denotes patient Tax:9606
38 1343-1350 Species denotes patient Tax:9606
39 980-986 Chemical denotes oxygen MESH:D010100
40 1068-1074 Chemical denotes oxygen MESH:D010100
41 1102-1104 Chemical denotes Hg MESH:D008628
42 1151-1157 Chemical denotes oxygen MESH:D010100
43 445-453 Disease denotes COVID-19 MESH:C000657245
44 583-606 Disease denotes ischemic cardiomyopathy MESH:D003324
45 692-704 Disease denotes hypertension MESH:D006973
46 706-720 Disease denotes atrial flutter MESH:D001282
47 726-741 Disease denotes ischemic stroke MESH:D002544
48 780-785 Disease denotes fever MESH:D005334
49 787-792 Disease denotes cough MESH:D003371
50 798-817 Disease denotes shortness of breath MESH:D004417
51 1306-1326 Disease denotes multifocal pneumonia
52 1376-1396 Disease denotes respiratory distress MESH:D012128
53 1403-1412 Disease denotes tachypnea MESH:D059246
54 1471-1497 Disease denotes respiratory muscle fatigue MESH:D012131
55 1512-1531 Disease denotes respiratory failure MESH:D012131
68 1775-1792 Species denotes novel coronavirus Tax:2697049
69 1815-1825 Species denotes SARS-CoV-2 Tax:2697049
70 1880-1887 Species denotes patient Tax:9606
71 2100-2107 Species denotes patient Tax:9606
72 2008-2018 Chemical denotes creatinine MESH:D003404
73 1932-1947 Disease denotes lymphocytopenia MESH:D008231
74 1968-1986 Disease denotes hyperbilirubinemia MESH:D006932
75 2130-2141 Disease denotes hypotension MESH:D007022
76 2192-2214 Disease denotes oliguric renal failure MESH:D009846
77 2278-2287 Disease denotes hypoxemia MESH:D000860
78 2304-2339 Disease denotes acute respiratory distress syndrome MESH:D012128
79 2341-2345 Disease denotes ARDS MESH:D012128
87 2479-2486 Species denotes patient Tax:9606
88 2774-2780 Chemical denotes oxygen MESH:D010100
89 2808-2814 Chemical denotes oxygen MESH:D010100
90 2354-2373 Disease denotes ventricular failure MESH:D006333
91 2416-2427 Disease denotes hypotension MESH:D007022
92 2595-2603 Disease denotes COVID-19 MESH:C000657245
93 2897-2920 Disease denotes ventricular dysfunction MESH:D018754
100 2979-2983 Disease denotes ARDS MESH:D012128
101 3022-3031 Disease denotes hypoxemia MESH:D000860
102 3315-3319 Disease denotes ARDS MESH:D012128
103 3338-3357 Disease denotes pulmonary pressures MESH:D006973
104 3491-3512 Disease denotes ventricular pressures MESH:D006973
105 3534-3553 Disease denotes ventricular failure MESH:D006333
117 3559-3566 Species denotes patient Tax:9606
118 3641-3657 Species denotes Escherichia coli Tax:562
119 3962-3969 Species denotes patient Tax:9606
120 3610-3622 Disease denotes septic shock MESH:D012772
121 3684-3694 Disease denotes bacteremia MESH:D016470
122 3696-3714 Disease denotes hyperbilirubinemia MESH:D006932
123 3728-3752 Disease denotes acalculous cholecystitis MESH:D042101
124 3787-3802 Disease denotes cholecystostomy
125 3808-3831 Disease denotes acute blood loss anemia MESH:D006473
126 3845-3867 Disease denotes gastrointestinal bleed MESH:D006471
127 3937-3956 Disease denotes respiratory failure MESH:D012131
139 4011-4018 Species denotes patient Tax:9606
140 4218-4225 Species denotes patient Tax:9606
141 4488-4495 Species denotes patient Tax:9606
142 4036-4054 Chemical denotes hydroxychloroquine MESH:D006886
143 4103-4114 Chemical denotes Oseltamivir MESH:D053139
144 4160-4179 Chemical denotes lopinavir-ritonavir MESH:C558899
145 4242-4261 Chemical denotes lopinavir–ritonavir MESH:C558899
146 4411-4429 Chemical denotes hydroxychloroquine MESH:D006886
147 4552-4562 Chemical denotes remdesivir MESH:C000606551
148 4577-4587 Chemical denotes creatinine MESH:D003404
149 4344-4362 Disease denotes hyperbilirubinemia MESH:D006932
167 4674-4684 Species denotes SARS-CoV-2 Tax:2697049
168 4690-4697 Species denotes patient Tax:9606
169 4755-4762 Species denotes patient Tax:9606
170 4863-4871 Species denotes patients Tax:9606
171 5156-5163 Species denotes patient Tax:9606
172 5247-5257 Species denotes SARS-CoV-2 Tax:2697049
173 5559-5563 Chemical denotes LVAD
174 4952-4961 Disease denotes mortality MESH:D003643
175 4967-4975 Disease denotes COVID-19 MESH:C000657245
176 5209-5225 Disease denotes critical illness MESH:D016638
177 5232-5241 Disease denotes infection MESH:D007239
178 5293-5303 Disease denotes infections MESH:D007239
179 5318-5326 Disease denotes COVID-19 MESH:C000657245
180 5486-5490 Disease denotes ARDS MESH:D012128
181 5629-5639 Disease denotes COVID-LVAD MESH:C000657245
182 5685-5693 Disease denotes COVID-19 MESH:C000657245
183 5711-5724 Disease denotes heart failure MESH:D006333

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1 6-17 NCBITaxon:11118 denotes Coronavirus
T2 55-71 UBERON:0002084 denotes Left Ventricular
T3 137-148 UBERON:0001004 denotes respiratory
T4 149-154 NCBITaxon:10239 denotes viral
T5 288-299 NCBITaxon:11118 denotes coronavirus
T6 309-321 SP_7 denotes severe acute
T7 322-333 SP_7;UBERON:0001004 denotes respiratory
T8 334-356 SP_7 denotes syndrome coronavirus 2
T9 358-368 SP_7 denotes SARS-CoV-2
T10 445-453 SP_7 denotes COVID-19
T11 470-486 UBERON:0002084 denotes left ventricular
T12 551-554 NCBITaxon:9606 denotes man
T13 706-712 UBERON:0002081 denotes atrial
T14 811-817 UBERON:0002048 denotes breath
T15 946-954 UBERON:0001637 denotes arterial
T16 1018-1032 UBERON:0013755 denotes Arterial blood
T17 1078-1092 UBERON:0013755 denotes arterial blood
T18 1236-1241 UBERON:0001443 denotes chest
T19 1270-1279 UBERON:0002048 denotes pulmonary
T20 1376-1387 UBERON:0001004 denotes respiratory
T21 1471-1489 UBERON:0014398 denotes respiratory muscle
T22 1512-1523 UBERON:0001004 denotes respiratory
T23 1781-1792 NCBITaxon:11118 denotes coronavirus
T24 1815-1825 SP_7 denotes SARS-CoV-2
T25 1932-1947 CL:0000542 denotes lymphocytopenia
T26 2008-2018 CHEBI:16737;CHEBI:16737 denotes creatinine
T27 2020-2027 CHEBI:24996;CHEBI:24996 denotes lactate
T28 2178-2184 CHEBI:38867;CHEBI:38867 denotes agents
T29 2201-2206 UBERON:0002113 denotes renal
T30 2236-2241 UBERON:0002113 denotes renal
T31 2310-2321 UBERON:0001004 denotes respiratory
T32 2348-2365 UBERON:0002080 denotes Right ventricular
T33 2595-2603 SP_7 denotes COVID-19
T34 2605-2621 UBERON:0002012 denotes Pulmonary artery
T35 2743-2749 UBERON:0001638 denotes venous
T36 2801-2807 UBERON:0001638 denotes venous
T37 2835-2848 UBERON:0000948 denotes Transthoracic
T38 2891-2908 UBERON:0002080 denotes right ventricular
T39 3130-3141 GO:0015671 denotes oxygenation
T40 3296-3311 UBERON:0002080 denotes right ventricle
T41 3338-3347 UBERON:0002048 denotes pulmonary
T42 3485-3502 UBERON:0002080 denotes right ventricular
T43 3528-3545 UBERON:0002080 denotes right ventricular
T44 3641-3657 NCBITaxon:562 denotes Escherichia coli
T45 3662-3675 NCBITaxon:1578 denotes Lactobacillus
T46 3676-3683 NCBITaxon:species denotes species
T47 3814-3819 UBERON:0000178 denotes blood
T48 3845-3861 UBERON:0005409 denotes gastrointestinal
T49 3878-3883 UBERON:0000178 denotes blood
T50 3937-3948 UBERON:0001004 denotes respiratory
T51 4036-4054 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T52 4103-4114 CHEBI:7798;CHEBI:7798 denotes Oseltamivir
T53 4160-4169 CHEBI:31781;CHEBI:31781;DG_23 denotes lopinavir
T54 4170-4179 CHEBI:45409;CHEBI:45409;DG_30 denotes ritonavir
T55 4242-4251 CHEBI:31781;CHEBI:31781;DG_23 denotes lopinavir
T56 4252-4261 DG_30 denotes ritonavir
T57 4411-4429 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T58 4552-4562 DG_28 denotes remdesivir
T59 4577-4587 CHEBI:16737;CHEBI:16737 denotes creatinine
T60 4674-4684 SP_7 denotes SARS-CoV-2
T61 4877-4891 UBERON:0004535 denotes cardiovascular
T62 4967-4975 SP_7 denotes COVID-19
T63 5017-5025 GO:0006955 denotes cellular
T64 5026-5034 GO:0006955;UBERON:0002405 denotes immunity
T65 5247-5257 SP_7 denotes SARS-CoV-2
T66 5287-5292 NCBITaxon:10239 denotes viral
T67 5318-5326 SP_7 denotes COVID-19
T68 5685-5693 SP_7 denotes COVID-19
T69 5711-5716 UBERON:0000948 denotes heart
T7984 6-17 NCBITaxon:11118 denotes Coronavirus
T66656 55-71 UBERON:0002084 denotes Left Ventricular
T30100 137-148 UBERON:0001004 denotes respiratory
T15345 149-154 NCBITaxon:10239 denotes viral
T46216 288-299 NCBITaxon:11118 denotes coronavirus
T28409 309-321 SP_7 denotes severe acute
T91306 322-333 SP_7;UBERON:0001004 denotes respiratory
T61576 334-356 SP_7 denotes syndrome coronavirus 2
T14707 358-368 SP_7 denotes SARS-CoV-2
T52324 445-453 SP_7 denotes COVID-19
T94375 470-486 UBERON:0002084 denotes left ventricular
T52911 551-554 NCBITaxon:9606 denotes man
T27253 706-712 UBERON:0002081 denotes atrial
T81430 811-817 UBERON:0002048 denotes breath
T76114 946-954 UBERON:0001637 denotes arterial
T87816 1018-1032 UBERON:0013755 denotes Arterial blood
T11160 1078-1092 UBERON:0013755 denotes arterial blood
T72332 1236-1241 UBERON:0001443 denotes chest
T23819 1270-1279 UBERON:0002048 denotes pulmonary
T25251 1376-1387 UBERON:0001004 denotes respiratory
T69488 1471-1489 UBERON:0014398 denotes respiratory muscle
T50660 1512-1523 UBERON:0001004 denotes respiratory
T85571 1781-1792 NCBITaxon:11118 denotes coronavirus
T19324 1815-1825 SP_7 denotes SARS-CoV-2
T28744 1932-1947 CL:0000542 denotes lymphocytopenia
T48650 2008-2018 CHEBI:16737;CHEBI:16737 denotes creatinine
T88477 2020-2027 CHEBI:24996;CHEBI:24996 denotes lactate
T31795 2178-2184 CHEBI:38867;CHEBI:38867 denotes agents
T81154 2201-2206 UBERON:0002113 denotes renal
T54163 2236-2241 UBERON:0002113 denotes renal
T17412 2310-2321 UBERON:0001004 denotes respiratory
T82335 2348-2365 UBERON:0002080 denotes Right ventricular
T61888 2595-2603 SP_7 denotes COVID-19
T83895 2605-2621 UBERON:0002012 denotes Pulmonary artery
T55769 2743-2749 UBERON:0001638 denotes venous
T22292 2801-2807 UBERON:0001638 denotes venous
T93344 2835-2848 UBERON:0000948 denotes Transthoracic
T92821 2891-2908 UBERON:0002080 denotes right ventricular
T65262 3130-3141 GO:0015671 denotes oxygenation
T14719 3296-3311 UBERON:0002080 denotes right ventricle
T54511 3338-3347 UBERON:0002048 denotes pulmonary
T42452 3485-3502 UBERON:0002080 denotes right ventricular
T98354 3528-3545 UBERON:0002080 denotes right ventricular
T84632 3641-3657 NCBITaxon:562 denotes Escherichia coli
T83692 3662-3675 NCBITaxon:1578 denotes Lactobacillus
T69565 3676-3683 NCBITaxon:species denotes species
T75923 3814-3819 UBERON:0000178 denotes blood
T14243 3845-3861 UBERON:0005409 denotes gastrointestinal
T28472 3878-3883 UBERON:0000178 denotes blood
T62212 3937-3948 UBERON:0001004 denotes respiratory
T56070 4036-4054 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T87166 4103-4114 CHEBI:7798;CHEBI:7798 denotes Oseltamivir
T36846 4160-4169 CHEBI:31781;CHEBI:31781;DG_23 denotes lopinavir
T33068 4170-4179 CHEBI:45409;CHEBI:45409;DG_30 denotes ritonavir
T73640 4242-4251 CHEBI:31781;CHEBI:31781;DG_23 denotes lopinavir
T95625 4252-4261 DG_30 denotes ritonavir
T26539 4411-4429 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T42752 4552-4562 DG_28 denotes remdesivir
T1500 4577-4587 CHEBI:16737;CHEBI:16737 denotes creatinine
T53402 4674-4684 SP_7 denotes SARS-CoV-2
T59439 4877-4891 UBERON:0004535 denotes cardiovascular
T12200 4967-4975 SP_7 denotes COVID-19
T28960 5017-5025 GO:0006955 denotes cellular
T50851 5026-5034 GO:0006955;UBERON:0002405 denotes immunity
T55778 5247-5257 SP_7 denotes SARS-CoV-2
T87903 5287-5292 NCBITaxon:10239 denotes viral
T51906 5318-5326 SP_7 denotes COVID-19
T57786 5685-5693 SP_7 denotes COVID-19
T26940 5711-5716 UBERON:0000948 denotes heart

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 896-900 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T2 1018-1032 Body_part denotes Arterial blood http://purl.org/sig/ont/fma/fma83066
T3 1078-1092 Body_part denotes arterial blood http://purl.org/sig/ont/fma/fma83066
T4 1236-1241 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 1427-1433 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T6 1483-1489 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T7 1615-1620 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T8 1726-1731 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T9 2605-2621 Body_part denotes Pulmonary artery http://purl.org/sig/ont/fma/fma66326
T10 3296-3311 Body_part denotes right ventricle http://purl.org/sig/ont/fma/fma7098
T11 3814-3819 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T12 3878-3883 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T13 4403-4407 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T14 5711-5716 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1018-1032 Body_part denotes Arterial blood http://purl.obolibrary.org/obo/UBERON_0013755
T2 1027-1032 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 1078-1092 Body_part denotes arterial blood http://purl.obolibrary.org/obo/UBERON_0013755
T4 1087-1092 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T5 1236-1241 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 1471-1489 Body_part denotes respiratory muscle http://purl.obolibrary.org/obo/UBERON_0014398
T7 1615-1620 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 1726-1731 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 2605-2621 Body_part denotes Pulmonary artery http://purl.obolibrary.org/obo/UBERON_0002012
T10 2615-2621 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T11 3814-3819 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T12 3878-3883 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T13 5711-5716 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 6-30 Disease denotes Coronavirus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T2 265-274 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T3 309-356 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 309-342 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 358-366 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 445-453 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 592-606 Disease denotes cardiomyopathy http://purl.obolibrary.org/obo/MONDO_0004994
T8 692-704 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T9 706-720 Disease denotes atrial flutter http://purl.obolibrary.org/obo/MONDO_0005310
T10 735-741 Disease denotes stroke http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T12 1317-1326 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 1512-1531 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T14 1693-1702 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 1815-1823 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 1932-1947 Disease denotes lymphocytopenia http://purl.obolibrary.org/obo/MONDO_0003783
T17 1968-1986 Disease denotes hyperbilirubinemia http://purl.obolibrary.org/obo/MONDO_0002408|http://purl.obolibrary.org/obo/MONDO_0024288
T19 2130-2141 Disease denotes hypotension http://purl.obolibrary.org/obo/MONDO_0005468
T20 2201-2214 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T21 2304-2339 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T22 2310-2339 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T23 2341-2345 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T24 2416-2427 Disease denotes hypotension http://purl.obolibrary.org/obo/MONDO_0005468
T25 2595-2603 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 2979-2983 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T27 3315-3319 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T28 3684-3694 Disease denotes bacteremia http://purl.obolibrary.org/obo/MONDO_0005229
T29 3696-3714 Disease denotes hyperbilirubinemia http://purl.obolibrary.org/obo/MONDO_0002408|http://purl.obolibrary.org/obo/MONDO_0024288
T31 3728-3752 Disease denotes acalculous cholecystitis http://purl.obolibrary.org/obo/MONDO_0002155|http://purl.obolibrary.org/obo/MONDO_0006633
T33 3825-3831 Disease denotes anemia http://purl.obolibrary.org/obo/MONDO_0002280
T34 3937-3956 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T35 4344-4362 Disease denotes hyperbilirubinemia http://purl.obolibrary.org/obo/MONDO_0002408|http://purl.obolibrary.org/obo/MONDO_0024288
T37 4674-4682 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 5232-5241 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 5247-5255 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 5287-5303 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T41 5318-5326 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 5486-5490 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T43 5685-5693 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 5702-5724 Disease denotes advanced heart failure http://purl.obolibrary.org/obo/MONDO_0005257
T45 5711-5724 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 79-85 http://purl.obolibrary.org/obo/OBI_0000968 denotes Device
T3 128-129 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 280-281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 457-458 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 494-500 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T7 537-538 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 560-561 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 761-762 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 894-895 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 946-954 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T12 946-954 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T13 1018-1026 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T14 1018-1026 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T15 1027-1032 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T16 1027-1032 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T17 1046-1047 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1078-1086 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T19 1078-1086 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T20 1087-1092 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T21 1087-1092 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T22 1234-1235 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T23 1236-1241 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T24 1335-1336 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 1427-1433 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T26 1427-1433 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T27 1427-1433 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T28 1427-1433 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T29 1483-1489 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T30 1483-1489 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T31 1483-1489 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T32 1483-1489 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T33 1612-1613 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1615-1620 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T35 1723-1724 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T36 1726-1731 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T37 1763-1770 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing
T38 2392-2393 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 2605-2621 http://purl.obolibrary.org/obo/UBERON_0002012 denotes Pulmonary artery
T40 2605-2621 http://www.ebi.ac.uk/efo/EFO_0001399 denotes Pulmonary artery
T41 2700-2701 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T42 3194-3195 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 3235-3238 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T44 3408-3411 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T45 3814-3819 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T46 3814-3819 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T47 3878-3883 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T48 3878-3883 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T49 4461-4462 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 4511-4512 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 4688-4689 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 4802-4805 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T53 5082-5087 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 , 4
T54 5351-5354 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T55 5627-5628 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 5711-5716 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T57 5711-5716 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T58 5711-5716 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T59 5711-5716 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 621-623 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T2 659-661 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T4 980-986 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T5 1068-1074 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T6 1102-1104 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T8 1151-1157 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T9 2008-2018 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T10 2020-2027 Chemical denotes lactate http://purl.obolibrary.org/obo/CHEBI_24996
T11 2166-2184 Chemical denotes vasopressor agents http://purl.obolibrary.org/obo/CHEBI_137431
T12 2766-2768 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T14 2774-2780 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T15 2808-2814 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T16 4036-4054 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T17 4103-4114 Chemical denotes Oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T18 4160-4179 Chemical denotes lopinavir-ritonavir http://purl.obolibrary.org/obo/CHEBI_145924
T19 4160-4169 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T20 4170-4179 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T21 4242-4251 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T22 4252-4261 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T23 4411-4429 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T24 4552-4562 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T25 4577-4587 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 5287-5303 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-93 Sentence denotes Novel Coronavirus Disease 2019 in a Patient on Durable Left Ventricular Assist Device Support
T2 95-215 Sentence denotes In December 2019, an outbreak of a severe respiratory viral illness was first identified in the Hubei province of China.
T3 216-370 Sentence denotes The illness was later discovered to be caused by infection with a novel coronavirus known as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
T4 371-516 Sentence denotes To the best of our knowledge, we present here the first confirmed case of COVID-19 in a patient on left ventricular assist device (LVAD) support.
T5 517-855 Sentence denotes Our case patient is a 66-year-old man with a history of end-stage ischemic cardiomyopathy, on HeartMate II (Abbott Laboratories, Abbott Park, IL) LVAD as destination therapy, hypertension, atrial flutter, and ischemic stroke who presented with a 4-day history of fever, cough, and shortness of breath after recent 2-month travel to Egypt.
T6 856-1017 Sentence denotes Initial physical examination revealed a body temperature of 100.9°F (38.3°C), normal mean arterial pressure by Doppler, and oxygen saturation of 70% on room air.
T7 1018-1188 Sentence denotes Arterial blood gas revealed a partial pressure of oxygen in arterial blood of 46 mm Hg despite delivery of 100% fraction of inspired oxygen via nonrebreather ventilation.
T8 1189-1233 Sentence denotes LVAD parameters were stable on presentation.
T9 1234-1338 Sentence denotes A chest radiograph showed bilateral pulmonary infiltrates suggestive of multifocal pneumonia (Fig. 1 a).
T10 1339-1438 Sentence denotes The patient seemed to be in moderate respiratory distress, with tachypnea and accessory muscle use.
T11 1439-1603 Sentence denotes Owing to concern for developing respiratory muscle fatigue and impending respiratory failure, the decision was made to pursue intubation and mechanical ventilation.
T12 1604-1762 Sentence denotes Fig. 1 (a) Chest radiograph showing bilateral patchy opacities suspicious for multifocal pneumonia on hospital day 1. (b) Chest radiograph on hospital day 13.
T13 1763-1855 Sentence denotes Testing for novel coronavirus returned positive for SARS-CoV-2 by polymerase chain reaction.
T14 1856-2072 Sentence denotes Salient features of the patient's initial clinical laboratory trend include lymphocytopenia, transaminitis, and hyperbilirubinemia, as well as elevated creatinine, lactate dehydrogenase, d-dimer, and ferritin levels.
T15 2073-2347 Sentence denotes In the following days, the patient developed progressive hypotension requiring initiation of vasopressor agents, acute oliguric renal failure requiring continuous renal replacement therapy, and refractory hypoxemia consistent with acute respiratory distress syndrome (ARDS).
T16 2348-2474 Sentence denotes Right ventricular failure was considered as a potential etiology of hypotension in the setting of LVAD and inflammatory surge.
T17 2475-2604 Sentence denotes The patient was unable to be transferred to the catheterization laboratory for invasive hemodynamic assessment owing to COVID-19.
T18 2605-2699 Sentence denotes Pulmonary artery catheterization was attempted at the bedside, but placement was unsuccessful.
T19 2700-2834 Sentence denotes A central line was used to measure central venous pressure (17 mm Hg) and oxygen saturation (central venous oxygen saturation of 75%).
T20 2835-2921 Sentence denotes Transthoracic echocardiogram revealed baseline moderate right ventricular dysfunction.
T21 2922-2964 Sentence denotes LVAD parameters otherwise remained stable.
T22 2965-3063 Sentence denotes Management of ARDS was further complicated by refractory hypoxemia despite mechanical ventilation.
T23 3064-3222 Sentence denotes Implementation of prone positioning was considered to assist with oxygenation; however, the presence of LVAD was determined to be a relative contraindication.
T24 3223-3554 Sentence denotes Although it has previously been shown that prone positioning unloads the right ventricle in ARDS owing to improved pulmonary pressures,1 the use of this maneuver in the setting of LVAD has not been well-described and may be adversely associated with increase in right ventricular pressures and subsequent right ventricular failure.
T25 3555-3896 Sentence denotes The patient's clinical course was later complicated by septic shock in the setting of Escherichia coli and Lactobacillus species bacteremia, hyperbilirubinemia secondary to acalculous cholecystitis with requirement for percutaneous cholecystostomy, and acute blood loss anemia secondary to gastrointestinal bleed requiring blood transfusion.
T26 3897-4006 Sentence denotes Owing to prolonged ventilator-dependent respiratory failure, the patient underwent placement of tracheostomy.
T27 4007-4102 Sentence denotes The patient was treated with hydroxychloroquine 600 mg twice daily after the initial diagnosis.
T28 4103-4382 Sentence denotes Oseltamivir 75 mg twice daily was added and, once liquid lopinavir-ritonavir was available at our institution, the patient was switched to lopinavir–ritonavir 400–100 mg twice daily on treatment day 5, but was discontinued in the setting of hyperbilirubinemia on treatment day 9.
T29 4383-4483 Sentence denotes He was transitioned back to hydroxychloroquine 200 mg twice daily to complete a total 14-day course.
T30 4484-4598 Sentence denotes The patient was deemed not a candidate for the compassionate use of remdesivir owing to poor creatinine clearance.
T31 4599-4726 Sentence denotes This report describes the first known presentation of illness secondary to SARS-CoV-2 in a patient with long-term LVAD support.
T32 4727-4832 Sentence denotes At the time of writing, the patient remains critically ill; however, there has been clinical improvement.
T33 4833-5258 Sentence denotes Recent evidence suggests that patients with cardiovascular comorbidities seem to be at increased risk of morbidity and mortality with COVID-19.2 Notably, prior studies have shown that cellular immunity is compromised among long-term LVAD recipients.3 , 4 This “functionally immunocompromised state” may in part explain the patient's rapid clinical deterioration and prolonged critical illness after infection with SARS-CoV-2.
T34 5259-5402 Sentence denotes Increased susceptibility to viral infections, particularly COVID-19, in the setting of LVAD has not been reported previously in the literature.
T35 5403-5585 Sentence denotes Furthermore, this case highlights an important consideration for the management of ARDS, as the safety and efficacy of prone positioning in the presence of LVAD is currently unknown.
T36 5586-5736 Sentence denotes Finally, we propose the establishment of a COVID-LVAD registry to further understand the impact of COVID-19 on this advanced heart failure population.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 592-606 Phenotype denotes cardiomyopathy http://purl.obolibrary.org/obo/HP_0001638
T2 692-704 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T3 706-720 Phenotype denotes atrial flutter http://purl.obolibrary.org/obo/HP_0004749
T4 726-741 Phenotype denotes ischemic stroke http://purl.obolibrary.org/obo/HP_0002140
T5 780-785 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 787-792 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T7 798-817 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T8 1270-1291 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T9 1317-1326 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 1376-1396 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T11 1403-1412 Phenotype denotes tachypnea http://purl.obolibrary.org/obo/HP_0002789
T12 1483-1497 Phenotype denotes muscle fatigue http://purl.obolibrary.org/obo/HP_0003750
T13 1512-1531 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T14 1693-1702 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 1932-1947 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T16 1968-1986 Phenotype denotes hyperbilirubinemia http://purl.obolibrary.org/obo/HP_0002904
T17 1999-2018 Phenotype denotes elevated creatinine http://purl.obolibrary.org/obo/HP_0003259
T18 2130-2141 Phenotype denotes hypotension http://purl.obolibrary.org/obo/HP_0002615
T19 2201-2214 Phenotype denotes renal failure http://purl.obolibrary.org/obo/HP_0000083
T20 2278-2287 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T21 2310-2330 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T22 2348-2373 Phenotype denotes Right ventricular failure http://purl.obolibrary.org/obo/HP_0001708
T23 2416-2427 Phenotype denotes hypotension http://purl.obolibrary.org/obo/HP_0002615
T24 3022-3031 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T25 3528-3553 Phenotype denotes right ventricular failure http://purl.obolibrary.org/obo/HP_0001708
T26 3617-3622 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T27 3684-3694 Phenotype denotes bacteremia http://purl.obolibrary.org/obo/HP_0031864
T28 3696-3714 Phenotype denotes hyperbilirubinemia http://purl.obolibrary.org/obo/HP_0002904
T29 3739-3752 Phenotype denotes cholecystitis http://purl.obolibrary.org/obo/HP_0001082
T30 3825-3831 Phenotype denotes anemia http://purl.obolibrary.org/obo/HP_0001903
T31 3845-3867 Phenotype denotes gastrointestinal bleed http://purl.obolibrary.org/obo/HP_0002239
T32 3937-3956 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T33 4344-4362 Phenotype denotes hyperbilirubinemia http://purl.obolibrary.org/obo/HP_0002904
T34 5711-5724 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635