PMC:7161517 / 28099-28538
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T159 | 176-184 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
| T160 | 206-212 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T161 | 231-235 | Body_part | denotes | IL-2 | http://purl.org/sig/ont/fma/fma84051 |
| T162 | 231-233 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T163 | 237-239 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T164 | 243-245 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T165 | 250-261 | Body_part | denotes | granulocyte | http://purl.org/sig/ont/fma/fma62854 |
| T166 | 321-328 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T167 | 340-348 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T168 | 365-372 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T169 | 376-386 | Body_part | denotes | macrophage | http://purl.org/sig/ont/fma/fma63261 |
| T170 | 400-407 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T146 | 15-23 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T147 | 140-148 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T256 | 149-152 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T257 | 174-175 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T258 | 206-212 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T259 | 231-235 | http://purl.obolibrary.org/obo/PR_000001379 | denotes | IL-2 |
| T260 | 250-287 | http://purl.obolibrary.org/obo/PR_000005932 | denotes | granulocyte-colony stimulating factor |
| T261 | 289-293 | http://purl.obolibrary.org/obo/PR_000005932 | denotes | GCSF |
| T262 | 296-312 | http://purl.obolibrary.org/obo/PR_000000017 | denotes | interferon gamma |
| T263 | 340-348 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T307 | 231-233 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T309 | 237-239 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T311 | 243-245 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T313 | 296-331 | Chemical | denotes | interferon gamma-induced protein 10 | http://purl.obolibrary.org/obo/CHEBI_138157 |
| T314 | 296-306 | Chemical | denotes | interferon | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T315 | 307-312 | Chemical | denotes | gamma | http://purl.obolibrary.org/obo/CHEBI_30212 |
| T316 | 321-328 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T317 | 365-372 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T318 | 400-407 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T319 | 410-415 | Chemical | denotes | alpha | http://purl.obolibrary.org/obo/CHEBI_30216 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T174 | 0-439 | Sentence | denotes | In the case of SARS-CoV-2, it is possible this shedding is also mediated by TNF-α because 1 of the clinical features noted in patients with COVID-19 has been the presence of a cytokine storm with increased plasma concentrations of IL-2, IL-7, IL-10, granulocyte-colony stimulating factor (GCSF), interferon gamma-induced protein 10 (IP10), monocyte chemoattractant protein 1, macrophage inflammatory protein 1 alpha (MIP1A), and TNF-α (2). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T42 | 176-190 | Phenotype | denotes | cytokine storm | http://purl.obolibrary.org/obo/HP_0033041 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T936 | 15-25 | SP_7 | denotes | SARS-CoV-2 |
| T937 | 76-81 | PR:000000134 | denotes | TNF-α |
| T938 | 140-148 | SP_7 | denotes | COVID-19 |
| T939 | 206-212 | UBERON:0001969 | denotes | plasma |
| T940 | 231-235 | PR:000001379 | denotes | IL-2 |
| T941 | 237-241 | PR:000001317 | denotes | IL-7 |
| T942 | 243-248 | PR:000001471 | denotes | IL-10 |
| T943 | 250-261 | CL:0000094;PR:000005932 | denotes | granulocyte |
| T944 | 261-287 | PR:000005932 | denotes | -colony stimulating factor |
| T945 | 289-293 | PR:000005932 | denotes | GCSF |
| T946 | 296-312 | PR:000000017 | denotes | interferon gamma |
| T947 | 333-337 | PR:000006064 | denotes | IP10 |
| T948 | 340-348 | CL:0000576;PR:000002122 | denotes | monocyte |
| T949 | 349-374 | PR:000002122 | denotes | chemoattractant protein 1 |
| T950 | 376-386 | CL:0000235;PR:000002123 | denotes | macrophage |
| T951 | 387-415 | PR:000002123 | denotes | inflammatory protein 1 alpha |
| T952 | 417-422 | PR:000002123 | denotes | MIP1A |
| T953 | 429-434 | PR:000000134 | denotes | TNF-α |
| T81337 | 15-25 | SP_7 | denotes | SARS-CoV-2 |
| T64884 | 76-81 | PR:000000134 | denotes | TNF-α |
| T14890 | 140-148 | SP_7 | denotes | COVID-19 |
| T78453 | 206-212 | UBERON:0001969 | denotes | plasma |
| T19233 | 231-235 | PR:000001379 | denotes | IL-2 |
| T94987 | 237-241 | PR:000001317 | denotes | IL-7 |
| T67055 | 243-248 | PR:000001471 | denotes | IL-10 |
| T59312 | 250-261 | CL:0000094;PR:000005932 | denotes | granulocyte |
| T9881 | 261-287 | PR:000005932 | denotes | -colony stimulating factor |
| T51530 | 289-293 | PR:000005932 | denotes | GCSF |
| T83137 | 296-312 | PR:000000017 | denotes | interferon gamma |
| T54488 | 333-337 | PR:000006064 | denotes | IP10 |
| T81532 | 340-348 | CL:0000576;PR:000002122 | denotes | monocyte |
| T25729 | 349-374 | PR:000002122 | denotes | chemoattractant protein 1 |
| T34939 | 376-386 | CL:0000235;PR:000002123 | denotes | macrophage |
| T7552 | 387-415 | PR:000002123 | denotes | inflammatory protein 1 alpha |
| T1328 | 417-422 | PR:000002123 | denotes | MIP1A |
| T95282 | 429-434 | PR:000000134 | denotes | TNF-α |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1233 | 76-81 | Gene | denotes | TNF-α | Gene:7124 |
| 1234 | 231-235 | Gene | denotes | IL-2 | Gene:3558 |
| 1235 | 237-241 | Gene | denotes | IL-7 | Gene:3574 |
| 1236 | 243-248 | Gene | denotes | IL-10 | Gene:3586 |
| 1237 | 250-287 | Gene | denotes | granulocyte-colony stimulating factor | Gene:1440 |
| 1238 | 289-293 | Gene | denotes | GCSF | Gene:1440 |
| 1239 | 333-337 | Gene | denotes | IP10 | Gene:3627 |
| 1240 | 340-374 | Gene | denotes | monocyte chemoattractant protein 1 | Gene:6347 |
| 1241 | 376-415 | Gene | denotes | macrophage inflammatory protein 1 alpha | Gene:6348 |
| 1242 | 417-422 | Gene | denotes | MIP1A | Gene:6348 |
| 1243 | 429-434 | Gene | denotes | TNF-α | Gene:7124 |
| 1260 | 15-25 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1261 | 126-134 | Species | denotes | patients | Tax:9606 |
| 1267 | 140-148 | Disease | denotes | COVID-19 | MESH:C000657245 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32305401-31986264-55252988 | 436-437 | 31986264 | denotes | 2 |