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PMC:7160614 / 5359-7484 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
120 217-225 Species denotes patients Tax:9606
121 375-378 Species denotes men Tax:9606
122 429-434 Species denotes women Tax:9606
123 483-491 Species denotes patients Tax:9606
124 594-602 Species denotes patients Tax:9606
125 751-759 Species denotes patients Tax:9606
126 790-796 Species denotes People Tax:9606
127 893-896 Species denotes men Tax:9606
128 948-953 Species denotes women Tax:9606
129 1120-1127 Species denotes patient Tax:9606
130 231-239 Disease denotes COVID-19 MESH:C000657245
131 512-532 Disease denotes SARS-CoV-2 infection MESH:C000657245
132 741-750 Disease denotes pneumonia MESH:D011014
133 768-776 Disease denotes COVID-19 MESH:C000657245
143 1388-1396 Species denotes patients Tax:9606
144 1502-1510 Species denotes patients Tax:9606
145 1533-1541 Species denotes patients Tax:9606
146 1555-1561 Species denotes People Tax:9606
147 1580-1588 Species denotes patients Tax:9606
148 1777-1785 Species denotes patients Tax:9606
149 1848-1856 Species denotes patients Tax:9606
150 1493-1501 Disease denotes COVID-19 MESH:C000657245
151 1839-1847 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T38 231-239 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 512-520 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 523-532 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 741-750 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T42 768-776 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T43 1493-1501 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 1839-1847 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T34 372-374 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T35 1077-1079 http://purl.obolibrary.org/obo/CLO_0002857 denotes E1
T36 1373-1374 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 1479-1480 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T6 1164-1169 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T13 741-750 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

0_colil

Id Subject Object Predicate Lexical cue
32300971-29948074-67436 1251-1253 29948074 denotes 19
32300971-30093881-67436 1251-1253 30093881 denotes 19
32300971-30546304-67436 1251-1253 30546304 denotes 19

TEST0

Id Subject Object Predicate Lexical cue
32300971-31-37-67436 1251-1253 ["29948074", "30093881", "30546304"] denotes 19

2_test

Id Subject Object Predicate Lexical cue
32300971-29948074-29373584 1251-1253 29948074 denotes 19
32300971-30093881-29373584 1251-1253 30093881 denotes 19
32300971-30546304-29373584 1251-1253 30546304 denotes 19

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T47 0-8 Sentence denotes Patients
T48 9-160 Sentence denotes Ethical approvals by the institutional review boards were obtained for this retrospective analysis, and the need to obtain informed consent was waived.
T49 161-478 Sentence denotes From January 1 to February 8, 2020, seventy consecutive patients with COVID-19 admitted in 5 independent hospitals from 4 cities were enrolled in this study (mean age, 42.9 years; range, 16–69 years), including 41 men (mean age, 41.8 years; range, 16–69 years) and 29 women (mean age, 44.5 years; range, 16–66 years).
T50 479-584 Sentence denotes All patients were confirmed with SARS-CoV-2 infection by real-time RT-PCR and next-generation sequencing.
T51 585-709 Sentence denotes Of these patients, 24 were from Huizhou City, 25 from Shantou City, 15 from Yongzhou City, and the rest 6 from Meizhou City.
T52 710-996 Sentence denotes At the same period, another 66 pneumonia patients without COVID-19 from Meizhou People’s Hospital were recruited as controls (mean age, 46.7 years; range, 0.3–93 years), including 43 men (mean age, 46.0 years; range, 0.3–93 years) and 23 women (mean age, 48.0 years; range, 1–86 years).
T53 997-1069 Sentence denotes All the controls were confirmed with consecutive negative RT-PCR assays.
T54 1070-1219 Sentence denotes Figure E1 in the Supplementary Material shows the patient recruitment pathway for the control group, along with the inclusion and exclusion criteria.
T55 1220-1357 Sentence denotes According to previous studies [19–21], whose sample size is comparable with ours, the ratio between primary and validation cohort is 7:3.
T56 1358-1478 Sentence denotes In this study, a total of 136 patients were divided into primary (n = 98) and validation (n = 38) cohorts, close to 7:3.
T57 1479-1760 Sentence denotes A total of 19 COVID-19 patients from two hospitals (6 patients from Meizhou People’s Hospital and 13 patients from the First Affiliated Hospital of Shantou University Medical College) and 19 randomly selected controls from Meizhou City were incorporated into the validation cohort.
T58 1761-1934 Sentence denotes The rest of the patients are incorporated in the primary cohort, including 51 COVID-19 patients from Huizhou, Yongzhou, and Shantou cities and 47 controls from Meizhou City.
T59 1935-2125 Sentence denotes The primary cohort was utilized to select the most valuable features and build the predictive model, and the validation cohort was used to evaluate and validate the performance of the model.

MyTest

Id Subject Object Predicate Lexical cue
32300971-29948074-29373584 1251-1253 29948074 denotes 19
32300971-30093881-29373584 1251-1253 30093881 denotes 19
32300971-30546304-29373584 1251-1253 30546304 denotes 19