
PMC:7160614 / 2591-5335
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
51 | 87-134 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
52 | 136-146 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
53 | 497-544 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
54 | 546-556 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
55 | 577-595 | Species | denotes | beta coronaviruses | Tax:694002 |
56 | 638-683 | Species | denotes | severe acute respiratory syndrome coronavirus | Tax:694009 |
57 | 685-693 | Species | denotes | SARS-Cov | Tax:694009 |
58 | 699-754 | Species | denotes | Middle East respiratory syndrome coronavirus (MERS-CoV) | Tax:1335626 |
59 | 230-238 | Disease | denotes | infected | MESH:D007239 |
74 | 760-768 | Species | denotes | Patients | Tax:9606 |
75 | 1335-1343 | Species | denotes | patients | Tax:9606 |
76 | 1595-1603 | Species | denotes | patients | Tax:9606 |
77 | 774-782 | Disease | denotes | COVID-19 | MESH:C000657245 |
78 | 791-800 | Disease | denotes | pneumonia | MESH:D011014 |
79 | 829-834 | Disease | denotes | fever | MESH:D005334 |
80 | 842-847 | Disease | denotes | cough | MESH:D003371 |
81 | 859-866 | Disease | denotes | myalgia | MESH:D063806 |
82 | 870-877 | Disease | denotes | fatigue | MESH:D005221 |
83 | 1071-1079 | Disease | denotes | COVID-19 | MESH:C000657245 |
84 | 1394-1402 | Disease | denotes | COVID-19 | MESH:C000657245 |
85 | 1463-1472 | Disease | denotes | pneumonia | MESH:D011014 |
86 | 1585-1594 | Disease | denotes | pneumonia | MESH:D011014 |
87 | 1621-1629 | Disease | denotes | COVID-19 | MESH:C000657245 |
93 | 2030-2040 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
94 | 2260-2268 | Species | denotes | patients | Tax:9606 |
95 | 1668-1676 | Disease | denotes | COVID-19 | MESH:C000657245 |
96 | 2245-2259 | Disease | denotes | critically ill | MESH:D016638 |
97 | 2306-2315 | Disease | denotes | pneumonia | MESH:D011014 |
101 | 2595-2603 | Species | denotes | patients | Tax:9606 |
102 | 2621-2629 | Disease | denotes | COVID-19 | MESH:C000657245 |
103 | 2672-2680 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T3 | 437-443 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T18 | 87-134 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T19 | 87-120 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T20 | 136-144 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T21 | 497-544 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T22 | 497-530 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T23 | 546-554 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T24 | 638-671 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T25 | 685-689 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T26 | 774-782 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T27 | 791-800 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T28 | 1071-1079 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T29 | 1394-1402 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T30 | 1463-1472 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T31 | 1585-1594 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T32 | 1621-1629 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T33 | 1668-1676 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T34 | 2030-2038 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T35 | 2306-2315 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T36 | 2621-2629 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T37 | 2672-2680 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18 | 51-63 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
T19 | 70-73 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T20 | 160-161 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T21 | 226-229 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T22 | 608-612 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T23 | 906-907 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T24 | 1345-1347 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T25 | 1703-1704 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T26 | 1718-1722 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T27 | 1948-1951 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T28 | 1992-1994 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T29 | 2018-2025 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T30 | 2050-2051 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T31 | 2376-2377 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T32 | 2499-2503 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T33 | 2660-2661 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T1 | 577-581 | Chemical | denotes | beta | http://purl.obolibrary.org/obo/CHEBI_10545 |
T2 | 1705-1717 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
T3 | 1713-1717 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T4 | 2486-2498 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
T5 | 2494-2498 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1736-1757 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
T2 | 1744-1757 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T5 | 791-800 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T6 | 829-834 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T7 | 842-847 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T8 | 859-866 | Phenotype | denotes | myalgia | http://purl.obolibrary.org/obo/HP_0003326 |
T9 | 870-877 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
T10 | 1463-1472 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T11 | 1585-1594 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T12 | 2306-2315 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T27 | 0-12 | Sentence | denotes | Introduction |
T28 | 13-211 | Sentence | denotes | On January 30, 2020, the World Health Organization (WHO) has declared the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) outbreak as a global health emergency of international concern. |
T29 | 212-306 | Sentence | denotes | This outbreak has infected all provinces of China and rapidly spread to the rest of the world. |
T30 | 307-430 | Sentence | denotes | At the time of writing this article (March 16, 2020), there have been more than 158 countries and territories affected [1]. |
T31 | 431-759 | Sentence | denotes | Whole-genome sequencing and phylogenetic analysis reveal that the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is similar to some beta coronaviruses detected in bats, but it is distinct from severe acute respiratory syndrome coronavirus (SARS-Cov) and Middle East respiratory syndrome coronavirus (MERS-CoV) [2]. |
T32 | 760-888 | Sentence | denotes | Patients with COVID-19 develop pneumonia with associated symptoms of fever (98%), cough (76%), and myalgia or fatigue (44%) [3]. |
T33 | 889-987 | Sentence | denotes | CT imaging plays a critical role in the diagnosis and the monitoring of disease progression [4–6]. |
T34 | 988-1215 | Sentence | denotes | The latest research studies described the characteristic imaging manifestations of COVID-19, including ground-glass opacities (GGO) (57 to 88%), bilateral involvement (76 to 88%), and peripheral distribution (33 to 85%) [7–10]. |
T35 | 1216-1352 | Sentence | denotes | Other imaging features such as consolidation, cavitation, and interlobular septal thickening are also reported in some patients [11–13]. |
T36 | 1353-1473 | Sentence | denotes | However, these imaging manifestations of COVID-19 are nonspecific and are difficult to distinguish from other pneumonia. |
T37 | 1474-1630 | Sentence | denotes | To our knowledge, there have been no studies explicitly comparing imaging and clinical characteristics between pneumonia patients with and without COVID-19. |
T38 | 1631-1828 | Sentence | denotes | The current diagnostic criterion for COVID-19 is the positive result of a nucleic acid test by real-time reverse transcription polymerase chain reaction (RT-PCR) or next-generation sequencing [14]. |
T39 | 1829-1996 | Sentence | denotes | However, false-negative results caused by unstable specimen processing are relatively high in clinical practice, which has worsened the spread of the outbreak [15–18]. |
T40 | 1997-2111 | Sentence | denotes | Moreover, laboratory testing for SARS-CoV-2 requires a rigorous platform, which is not assembled in all hospitals. |
T41 | 2112-2186 | Sentence | denotes | Thus, this requires specimen transfer, which may delay diagnosis for days. |
T42 | 2187-2330 | Sentence | denotes | Early and accurate diagnosis is crucial, particularly for critically ill patients who need emergency surgery, and with pneumonia complications. |
T43 | 2331-2504 | Sentence | denotes | To solve these problems, we hypothesize that a diagnostic model can be developed based on CT imaging and clinical manifestations alone, independent of the nucleic acid test. |
T44 | 2505-2630 | Sentence | denotes | In this study, we identify the differences in imaging and clinical manifestations between patients with and without COVID-19. |
T45 | 2631-2744 | Sentence | denotes | We also develop and validate a model for COVID-19 diagnosis based on radiological semantic and clinical features. |