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PMC:7160614 / 2591-5335 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
51 87-134 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
52 136-146 Species denotes SARS-CoV-2 Tax:2697049
53 497-544 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
54 546-556 Species denotes SARS-CoV-2 Tax:2697049
55 577-595 Species denotes beta coronaviruses Tax:694002
56 638-683 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
57 685-693 Species denotes SARS-Cov Tax:694009
58 699-754 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
59 230-238 Disease denotes infected MESH:D007239
74 760-768 Species denotes Patients Tax:9606
75 1335-1343 Species denotes patients Tax:9606
76 1595-1603 Species denotes patients Tax:9606
77 774-782 Disease denotes COVID-19 MESH:C000657245
78 791-800 Disease denotes pneumonia MESH:D011014
79 829-834 Disease denotes fever MESH:D005334
80 842-847 Disease denotes cough MESH:D003371
81 859-866 Disease denotes myalgia MESH:D063806
82 870-877 Disease denotes fatigue MESH:D005221
83 1071-1079 Disease denotes COVID-19 MESH:C000657245
84 1394-1402 Disease denotes COVID-19 MESH:C000657245
85 1463-1472 Disease denotes pneumonia MESH:D011014
86 1585-1594 Disease denotes pneumonia MESH:D011014
87 1621-1629 Disease denotes COVID-19 MESH:C000657245
93 2030-2040 Species denotes SARS-CoV-2 Tax:2697049
94 2260-2268 Species denotes patients Tax:9606
95 1668-1676 Disease denotes COVID-19 MESH:C000657245
96 2245-2259 Disease denotes critically ill MESH:D016638
97 2306-2315 Disease denotes pneumonia MESH:D011014
101 2595-2603 Species denotes patients Tax:9606
102 2621-2629 Disease denotes COVID-19 MESH:C000657245
103 2672-2680 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 437-443 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 87-134 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T19 87-120 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T20 136-144 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 497-544 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T22 497-530 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T23 546-554 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T24 638-671 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T25 685-689 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 774-782 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 791-800 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 1071-1079 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 1394-1402 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 1463-1472 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T31 1585-1594 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T32 1621-1629 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 1668-1676 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 2030-2038 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 2306-2315 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T36 2621-2629 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 2672-2680 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 51-63 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T19 70-73 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 160-161 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 226-229 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 608-612 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T23 906-907 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 1345-1347 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T25 1703-1704 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 1718-1722 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T27 1948-1951 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 1992-1994 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T29 2018-2025 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T30 2050-2051 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 2376-2377 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 2499-2503 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T33 2660-2661 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 577-581 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T2 1705-1717 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T3 1713-1717 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T4 2486-2498 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T5 2494-2498 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1736-1757 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 1744-1757 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 791-800 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 829-834 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T7 842-847 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T8 859-866 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T9 870-877 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T10 1463-1472 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1585-1594 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T12 2306-2315 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-12 Sentence denotes Introduction
T28 13-211 Sentence denotes On January 30, 2020, the World Health Organization (WHO) has declared the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) outbreak as a global health emergency of international concern.
T29 212-306 Sentence denotes This outbreak has infected all provinces of China and rapidly spread to the rest of the world.
T30 307-430 Sentence denotes At the time of writing this article (March 16, 2020), there have been more than 158 countries and territories affected [1].
T31 431-759 Sentence denotes Whole-genome sequencing and phylogenetic analysis reveal that the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is similar to some beta coronaviruses detected in bats, but it is distinct from severe acute respiratory syndrome coronavirus (SARS-Cov) and Middle East respiratory syndrome coronavirus (MERS-CoV) [2].
T32 760-888 Sentence denotes Patients with COVID-19 develop pneumonia with associated symptoms of fever (98%), cough (76%), and myalgia or fatigue (44%) [3].
T33 889-987 Sentence denotes CT imaging plays a critical role in the diagnosis and the monitoring of disease progression [4–6].
T34 988-1215 Sentence denotes The latest research studies described the characteristic imaging manifestations of COVID-19, including ground-glass opacities (GGO) (57 to 88%), bilateral involvement (76 to 88%), and peripheral distribution (33 to 85%) [7–10].
T35 1216-1352 Sentence denotes Other imaging features such as consolidation, cavitation, and interlobular septal thickening are also reported in some patients [11–13].
T36 1353-1473 Sentence denotes However, these imaging manifestations of COVID-19 are nonspecific and are difficult to distinguish from other pneumonia.
T37 1474-1630 Sentence denotes To our knowledge, there have been no studies explicitly comparing imaging and clinical characteristics between pneumonia patients with and without COVID-19.
T38 1631-1828 Sentence denotes The current diagnostic criterion for COVID-19 is the positive result of a nucleic acid test by real-time reverse transcription polymerase chain reaction (RT-PCR) or next-generation sequencing [14].
T39 1829-1996 Sentence denotes However, false-negative results caused by unstable specimen processing are relatively high in clinical practice, which has worsened the spread of the outbreak [15–18].
T40 1997-2111 Sentence denotes Moreover, laboratory testing for SARS-CoV-2 requires a rigorous platform, which is not assembled in all hospitals.
T41 2112-2186 Sentence denotes Thus, this requires specimen transfer, which may delay diagnosis for days.
T42 2187-2330 Sentence denotes Early and accurate diagnosis is crucial, particularly for critically ill patients who need emergency surgery, and with pneumonia complications.
T43 2331-2504 Sentence denotes To solve these problems, we hypothesize that a diagnostic model can be developed based on CT imaging and clinical manifestations alone, independent of the nucleic acid test.
T44 2505-2630 Sentence denotes In this study, we identify the differences in imaging and clinical manifestations between patients with and without COVID-19.
T45 2631-2744 Sentence denotes We also develop and validate a model for COVID-19 diagnosis based on radiological semantic and clinical features.