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PMC:7156903 / 77-2277 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1055-1060 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 1098-1103 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 1693-1698 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1098-1103 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 115-134 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T4 143-152 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 358-368 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T6 412-420 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 587-595 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 913-921 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 1331-1340 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 83-84 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 306-309 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 322-323 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 497-498 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 620-625 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 745-746 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 837-838 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1055-1060 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T9 1098-1103 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T10 1111-1120 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T11 1351-1352 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1422-1423 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1693-1698 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T14 1775-1778 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 1978-1984 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T16 2015-2019 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 645-657 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T2 653-657 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T3 714-726 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T4 722-726 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-169 Sentence denotes Almost the entire world, not only China, is currently experiencing the outbreak of a novel coronavirus that causes respiratory disease, severe pneumonia, and even death.
T4 170-257 Sentence denotes The outbreak began in Wuhan, China, in December of 2019 and is currently still ongoing.
T5 258-475 Sentence denotes This novel coronavirus is highly contagious and has resulted in a continuously increasing number of infections and deaths that have already surpassed the SARS-CoV outbreak that occurred in China between 2002 and 2003.
T6 476-547 Sentence denotes It is now officially a pandemic, announced by WHO on the 11th of March.
T7 548-812 Sentence denotes Currently, the 2019 novel coronavirus (SARS-CoV-2) can be identified by virus isolation or viral nucleic acid detection; however, false negatives associated with the nucleic acid detection provide a clinical challenge and thus make the imaging examination crucial.
T8 813-932 Sentence denotes Imaging exams have been a main clinical diagnostic criteria for the 2019 novel coronavirus disease (COVID-19) in China.
T9 933-1277 Sentence denotes Imaging features of multiple patchy areas of ground glass opacity and consolidation predominately in the periphery of the lungs are characteristic manifestations on chest CT and extremely helpful in the early detection and diagnosis of this disease, which aids prompt diagnosis and the eventual control of this emerging global health emergency.
T10 1278-1288 Sentence denotes Key Points
T11 1289-1460 Sentence denotes • In December 2019, China, an outbreak of pneumonia caused by a novel, highly contagious coronavirus raised grave concerns and posed a huge threat to global public health.
T12 1461-1752 Sentence denotes • Among the infected patients, characteristic findings on CT imaging include multiple, patchy, ground-glass opacity, crazy-paving pattern, and consolidation shadows, mainly distributed in the peripheral and subpleural areas of both lungs, which are very helpful for the frontline clinicians.
T13 1753-2028 Sentence denotes • Imaging examination has become the indispensable means not only in the early detection and diagnosis but also in monitoring the clinical course, evaluating the disease severity, and may be presented as an important warning signal preceding the negative RT-PCR test results.
T14 2030-2063 Sentence denotes Electronic supplementary material
T15 2064-2200 Sentence denotes The online version of this article (10.1007/s00330-020-06827-4) contains supplementary material, which is available to authorized users.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 143-152 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 1331-1340 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
16 85-102 Species denotes novel coronavirus Tax:2697049
17 263-280 Species denotes novel coronavirus Tax:2697049
18 412-420 Species denotes SARS-CoV Tax:694009
19 563-585 Species denotes 2019 novel coronavirus Tax:2697049
20 587-597 Species denotes SARS-CoV-2 Tax:2697049
21 115-134 Disease denotes respiratory disease MESH:D012140
22 143-152 Disease denotes pneumonia MESH:D011014
23 163-168 Disease denotes death MESH:D003643
24 358-368 Disease denotes infections MESH:D007239
25 373-379 Disease denotes deaths MESH:D003643
26 881-911 Disease denotes 2019 novel coronavirus disease MESH:C000657245
27 913-921 Disease denotes COVID-19 MESH:C000657245
30 1378-1389 Species denotes coronavirus Tax:11118
31 1331-1340 Disease denotes pneumonia MESH:D011014
34 1482-1490 Species denotes patients Tax:9606
35 1473-1481 Disease denotes infected MESH:D007239