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PMC:7156903 / 5790-7242 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T43 58-68 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T44 154-163 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T45 241-249 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 251-284 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T47 622-630 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T48 807-811 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 921-929 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T50 934-942 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 966-974 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 1097-1101 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T53 1121-1129 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 1193-1197 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T55 1217-1225 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 1289-1293 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T57 1338-1342 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T49 85-92 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T50 97-103 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T51 148-153 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T52 595-598 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T53 657-660 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T54 690-693 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T55 709-712 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T56 740-745 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T57 785-790 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 849-852 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T59 1028-1029 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 1228-1233 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 694-696 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T15 713-715 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T16 985-996 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T40 0-104 Sentence denotes Coronaviruses typically result in respiratory and enteric infections and affect both animals and humans.
T41 105-489 Sentence denotes Six coronavirus species are known to cause human infection, two of which typically can cause severe respiratory illness and fatalities: SARS-CoV (severe acute respiratory syndrome coronavirus) which had an outbreak in Guangdong, China, between 2002 and 2003 and MERS-CoV (Middle East respiratory syndrome coronavirus) which had an outbreak in 2012 outbreaks in the Middle East [6, 7].
T42 490-591 Sentence denotes By January 7, 2020, Chinese scientists had isolated the novel coronavirus from patients in Wuhan [3].
T43 592-829 Sentence denotes It has been reported [8] that SARS-CoV-2 was more similar to two bat-derived coronavirus strains (bat-SL-CoVZC45 and bat-SL-CoVZXC21) than to known human-infecting coronaviruses, including the virus that caused the SARS outbreak of 2003.
T44 830-1039 Sentence denotes Molecular modeling has shown structural similarity between the receptor-binding domains of SARS-CoV and SARS-CoV-2, which suggests that SARS-CoV-2 may use angiotensin-converting enzyme 2 (ACE 2) as a receptor.
T45 1040-1153 Sentence denotes The differences of the etiological characteristics among SARS-COV, MERS-COV, and SARS-CoV-2 are shown in Table 1.
T46 1154-1227 Sentence denotes Table 1 Etiological characteristics of SARS-COV, MERS-COV, and SARS-CoV-2
T47 1228-1288 Sentence denotes Virus Genus Intermediate host Reservoir host Receptor Origin
T48 1289-1315 Sentence denotes SARS-COV-2 β-coronavirus ?
T49 1316-1337 Sentence denotes Bat ACE2 Wuhan, China
T50 1338-1392 Sentence denotes SARS-COV β-coronavirus Civet Bat ACE2 Guangzhou, China
T51 1393-1452 Sentence denotes MERS-COV β-coronavirus Dromedary Bat CD26/DPP4 Saudi Arabia

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T17 205-224 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086

MyTest

Id Subject Object Predicate Lexical cue
32296940-12690092-29373569 483-484 12690092 denotes 6
32296940-23075143-29373570 486-487 23075143 denotes 7
32296940-31986257-29373571 588-589 31986257 denotes 3

0_colil

Id Subject Object Predicate Lexical cue
32296940-12690092-67384 483-484 12690092 denotes 6
32296940-23075143-67385 486-487 23075143 denotes 7
32296940-31986257-67386 588-589 31986257 denotes 3

TEST0

Id Subject Object Predicate Lexical cue
32296940-233-238-67384 483-484 ["12690092"] denotes 6
32296940-236-241-67385 486-487 ["23075143"] denotes 7
32296940-98-103-67386 588-589 ["31986257"] denotes 3

2_test

Id Subject Object Predicate Lexical cue
32296940-12690092-29373569 483-484 12690092 denotes 6
32296940-23075143-29373570 486-487 23075143 denotes 7
32296940-31986257-29373571 588-589 31986257 denotes 3

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
148 1320-1324 Gene denotes ACE2 Gene:59272
149 1371-1375 Gene denotes ACE2 Gene:59272
150 1435-1439 Gene denotes DPP4 Gene:105093689
151 1289-1299 Species denotes SARS-COV-2 Tax:2697049
152 1300-1313 Species denotes β-coronavirus Tax:694002
153 1338-1346 Species denotes SARS-COV Tax:694009
154 1347-1360 Species denotes β-coronavirus Tax:694002
155 1393-1401 Species denotes MERS-COV Tax:1335626
156 1402-1415 Species denotes β-coronavirus Tax:694002
157 1416-1425 Species denotes Dromedary Tax:9838
160 1193-1201 Species denotes SARS-COV Tax:694009
161 1203-1211 Species denotes MERS-COV Tax:1335626
187 985-1016 Gene denotes angiotensin-converting enzyme 2 Gene:59272
188 1018-1023 Gene denotes ACE 2 Gene:59272
189 0-13 Species denotes Coronaviruses Tax:11118
190 97-103 Species denotes humans Tax:9606
191 109-120 Species denotes coronavirus Tax:11118
192 148-153 Species denotes human Tax:9606
193 241-249 Species denotes SARS-CoV Tax:694009
194 251-296 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
195 367-375 Species denotes MERS-CoV Tax:1335626
196 377-421 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
197 546-563 Species denotes novel coronavirus Tax:2697049
198 569-577 Species denotes patients Tax:9606
199 622-632 Species denotes SARS-CoV-2 Tax:2697049
200 669-680 Species denotes coronavirus Tax:11118
201 740-745 Species denotes human Tax:9606
202 756-769 Species denotes coronaviruses Tax:11118
203 921-929 Species denotes SARS-CoV Tax:694009
204 934-944 Species denotes SARS-CoV-2 Tax:2697049
205 966-976 Species denotes SARS-CoV-2 Tax:2697049
206 1097-1105 Species denotes SARS-COV Tax:694009
207 1107-1115 Species denotes MERS-COV Tax:1335626
208 1121-1131 Species denotes SARS-CoV-2 Tax:2697049
209 34-68 Disease denotes respiratory and enteric infections MESH:D012141
210 154-163 Disease denotes infection MESH:D007239
211 205-224 Disease denotes respiratory illness MESH:D012140