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PMC:7156903 / 11970-16403 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T25 12-17 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T26 224-247 Body_part denotes bronchovascular bundles http://purl.org/sig/ont/fma/fma84474
T27 454-468 Body_part denotes bronchial wall http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480
T29 550-556 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T30 560-577 Body_part denotes interlobar pleura http://purl.org/sig/ont/fma/fma9841
T31 944-961 Body_part denotes right lower lobes http://purl.org/sig/ont/fma/fma7337
T32 1033-1038 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T33 1669-1674 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T34 1715-1720 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T35 1844-1849 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T36 1865-1870 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T37 2180-2185 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T38 2196-2219 Body_part denotes bronchovascular bundles http://purl.org/sig/ont/fma/fma84474
T39 2295-2310 Body_part denotes lung parenchyma http://purl.org/sig/ont/fma/fma27360
T40 2441-2446 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T41 3024-3029 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T42 3137-3142 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T43 3299-3304 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T44 3469-3474 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T45 3548-3564 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T46 3695-3710 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T47 3756-3761 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T48 3920-3925 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T49 3995-4001 Body_part denotes lobule http://purl.org/sig/ont/fma/fma45737
T50 4305-4322 Body_part denotes right middle lobe http://purl.org/sig/ont/fma/fma7383
T51 4383-4399 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T23 12-17 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 550-556 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T25 571-577 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T26 601-617 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T27 1033-1038 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T28 1715-1720 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T29 1844-1849 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T30 1865-1870 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T31 2295-2310 Body_part denotes lung parenchyma http://purl.obolibrary.org/obo/UBERON_0008946
T32 2295-2299 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T33 2300-2310 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T34 2375-2391 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T35 2441-2446 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T36 2798-2814 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T37 3024-3029 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T38 3469-3474 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T39 3560-3564 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T40 3706-3710 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T41 3756-3761 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T42 3920-3925 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T43 3995-4001 Body_part denotes lobule http://purl.obolibrary.org/obo/UBERON_0009911
T44 4318-4322 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T45 4395-4399 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T75 48-56 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T76 639-654 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T77 1054-1062 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T78 1396-1404 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 1877-1885 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 1960-1968 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T81 2404-2419 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T82 2462-2470 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T83 3453-3462 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T84 3746-3754 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T102 12-17 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T103 374-375 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 521-522 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 550-556 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T106 571-577 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T107 583-584 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 601-617 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T109 765-766 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 1033-1038 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T111 1288-1290 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T112 1632-1641 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T113 1669-1674 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T114 1684-1685 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 1715-1720 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T116 1740-1741 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 1844-1849 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T118 1865-1870 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T119 2180-2185 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T120 2295-2299 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T121 2295-2299 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T122 2357-2358 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 2375-2391 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T124 2441-2446 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T125 2524-2525 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T126 2619-2620 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T127 2669-2670 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T128 2737-2738 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T129 2794-2795 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T130 2798-2814 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T131 2948-2949 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T132 3024-3029 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T133 3042-3043 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 3048-3049 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 3137-3142 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T136 3193-3194 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T137 3199-3200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 3299-3304 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T139 3464-3466 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T140 3469-3474 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T141 3487-3488 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 3489-3491 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T143 3501-3505 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T144 3501-3505 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T145 3569-3570 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 3756-3761 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T147 3766-3767 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T148 3772-3773 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 3786-3790 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T150 3786-3790 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T151 3920-3925 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T152 3938-3939 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T153 3952-3956 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T154 3952-3956 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T155 3958-3959 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T156 4123-4129 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T157 4196-4197 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T158 4249-4250 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T159 4263-4267 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T160 4263-4267 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T161 4352-4361 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T24 3501-3505 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T25 3786-3790 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T26 3952-3956 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T27 4263-4267 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T84 0-269 Sentence denotes The typical chest CT imaging characteristics of COVID-19 include multiple, peripheral, bilateral, patchy, sub-segmental, or segmental ground glass opacities and areas of consolidation, which are mostly distributed along the bronchovascular bundles and subpleural space.
T85 270-400 Sentence denotes The presence of associated interlobular septal thickening in the areas of ground glass opacity can give a crazy paving appearance.
T86 401-498 Sentence denotes Air bronchograms with the areas of consolidation and bronchial wall thickening are often present.
T87 499-618 Sentence denotes More rarely, there is a thickening of the adjacent pleura or interlobar pleura, and a small amount of pleural effusion.
T88 619-674 Sentence denotes There is no obvious lymphadenopathy [15] (Tables 2, 3).
T89 675-967 Sentence denotes The imaging features mentioned above are consistent with the findings from 81 patients in a recently reported article, in which the predominant pattern of abnormality observed was bilateral, peripheral, ill-defined, and ground glass opacification, mainly involving the right lower lobes [20].
T90 968-1208 Sentence denotes Furthermore, in the currently available reports, the most common chest CT findings in COVID-19 patients are the peripheral areas of ground glass opacity/consolidation (without subpleural sparing) which are bilateral in distribution [21–23].
T91 1209-1341 Sentence denotes In one study, of 21 patients, most had more than two lobes affected (15 of 21, 71%) with bilateral involvement (16 of 21, 76%) [24].
T92 1342-1680 Sentence denotes Another study showed that the most common patterns of COVID-19 on thin-section CT images are pure ground glass opacity, ground glass opacity with intra- and/or interlobular septal thickening, and ground glass opacity with consolidation and consolidation, with prominent distribution in the posterior and peripheral part of the lungs [25].
T93 1681-1835 Sentence denotes In a large research cohort study, chest CT findings showed a bilateral distribution of patchy ground glass opacity and consolidation in 138 patients [26].
T94 1836-1913 Sentence denotes Typical chest radiograph and chest CT of COVID-19 are shown in Figs. 2 and 3.
T95 1914-1968 Sentence denotes Table 2 The typical features on CT imaging of COVID-19
T96 1969-2022 Sentence denotes Parameter Characteristic manifestations on CT imaging
T97 2023-2110 Sentence denotes Density Ground glass opacity and consolidation, possible interlobular septal thickening
T98 2111-2152 Sentence denotes Shape Patchy, sub-segmental, or segmental
T99 2153-2246 Sentence denotes Distribution Mid and lower lungs along the bronchovascular bundles with bilateral involvement
T100 2247-2310 Sentence denotes Location Peripheral and subpleural areas of the lung parenchyma
T101 2311-2419 Sentence denotes Concomitant signs (variable) Air bronchogram, a small amount of pleural effusion, no obvious lymphadenopathy
T102 2420-2470 Sentence denotes Table 3 Frequency of chest CT findings in COVID-19
T103 2471-2495 Sentence denotes CT signs Frequency Stage
T104 2496-2527 Sentence denotes Ground glass opacity ++++ E/A/S
T105 2528-2575 Sentence denotes Consolidation without ground glass opacity ++ S
T106 2576-2622 Sentence denotes Ground glass opacity and crazy paving ++ E/A/S
T107 2623-2672 Sentence denotes Ground glass opacity with consolidation +++ E/A/S
T108 2673-2706 Sentence denotes Patchy ground glass opacity +++ E
T109 2707-2742 Sentence denotes Bilateral distribution ++++ E/A/S/D
T110 2743-2772 Sentence denotes Peripheral distribution +++ E
T111 2773-2797 Sentence denotes Air bronchogram ++ E/A/S
T112 2798-2818 Sentence denotes Pleural effusion + S
T113 2819-2841 Sentence denotes Strip-like opacity + D
T114 2842-3016 Sentence denotes The appearance frequency of each CT characteristic is described in order from low to high as (+~++++); E, A, S, and D stand for stage early, advanced, severe, and dissipation
T115 3017-3148 Sentence denotes Fig. 2 Chest radiograph (a) in a 61-year-old man shows bilateral patchy, somewhat nodular opacities in the mid to lower lungs [16].
T116 3149-3305 Sentence denotes Unenhanced computed tomography (CT) images (b) in a 33-year-old woman., Images show multiple ground glass opacities in the periphery of the bilateral lungs.
T117 3306-3468 Sentence denotes The bilateral, peripheral patterns of opacities without subpleural sparing are common and characteristic CT findings of the 2019 novel coronavirus pneumonia [22].
T118 3469-3715 Sentence denotes Chest CT image of a 71-year-old male (c) shows consolidation in the peripheral right upper lobe and a patchy area of ground glass opacity with some associated consolidation intra- and interlobular septal thickening within the left upper lobe [25]
T119 3716-3755 Sentence denotes Fig. 3 Typical CT findings of COVID-19.
T120 3756-3919 Sentence denotes Chest CT (a) in a 75-year-old male show multiple patchy areas of pure ground glass opacity (GGO) and GGO with reticular and/or interlobular septal thickening [25].
T121 3920-4080 Sentence denotes Chest CT image of a 38-year-old male (b) shows multiple patches, grid-like lobule, and thickening of interlobular septa, typical “paving stone-like” signs [19].
T122 4081-4236 Sentence denotes An axial CT image obtained in 65-year-old female (c) shows bilateral ground glass and consolidative opacities with a striking peripheral distribution [23].
T123 4237-4433 Sentence denotes CT image of a 65-year-old male (d) shows large consolidation in the right middle lobe, patchy consolidation in the posterior and basal segment of right lower lobe, with air bronchogram inside [19]

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T19 601-617 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T20 639-654 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T21 2375-2391 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T22 2404-2419 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T23 2798-2814 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T24 3453-3462 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

MyTest

Id Subject Object Predicate Lexical cue
32296940-32029004-29373575 4076-4078 32029004 denotes 19
32296940-32029004-29373576 4430-4432 32029004 denotes 19

0_colil

Id Subject Object Predicate Lexical cue
32296940-32029004-67390 4076-4078 32029004 denotes 19
32296940-32029004-67391 4430-4432 32029004 denotes 19

TEST0

Id Subject Object Predicate Lexical cue
32296940-156-162-67390 4076-4078 ["32029004"] denotes 19
32296940-193-199-67391 4430-4432 ["32029004"] denotes 19

2_test

Id Subject Object Predicate Lexical cue
32296940-32029004-29373575 4076-4078 32029004 denotes 19
32296940-32029004-29373576 4430-4432 32029004 denotes 19

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
282 2375-2391 Disease denotes pleural effusion MESH:D010996
283 2404-2419 Disease denotes lymphadenopathy MESH:D008206
285 1960-1968 Disease denotes COVID-19 MESH:C000657245
287 2798-2814 Disease denotes Pleural effusion MESH:D010996
289 2462-2470 Disease denotes COVID-19 MESH:C000657245
291 3005-3016 Disease denotes dissipation
294 3213-3218 Species denotes woman Tax:9606
295 3435-3462 Disease denotes novel coronavirus pneumonia MESH:C000657245
297 3746-3754 Disease denotes COVID-19 MESH:C000657245
308 753-761 Species denotes patients Tax:9606
309 1063-1071 Species denotes patients Tax:9606
310 1229-1237 Species denotes patients Tax:9606
311 1821-1829 Species denotes patients Tax:9606
312 48-56 Disease denotes COVID-19 MESH:C000657245
313 601-617 Disease denotes pleural effusion MESH:D010996
314 639-654 Disease denotes lymphadenopathy MESH:D008206
315 1054-1062 Disease denotes COVID-19 MESH:C000657245
316 1396-1404 Disease denotes COVID-19 MESH:C000657245
317 1877-1885 Disease denotes COVID-19 MESH:C000657245