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PMC:7156291 / 8168-11037 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
155 0-7 Species denotes Patient Tax:9606
161 27-35 Species denotes patients Tax:9606
162 171-179 Species denotes patients Tax:9606
163 359-367 Species denotes patients Tax:9606
164 453-461 Species denotes patients Tax:9606
165 471-480 Disease denotes pneumonia MESH:D011014
181 2047-2050 Gene denotes AST Gene:26503
182 2148-2166 Gene denotes C-reactive protein Gene:1401
183 997-1004 Species denotes Patient Tax:9606
184 1229-1236 Species denotes patient Tax:9606
185 1010-1013 Disease denotes NCP MESH:C000657245
186 1220-1228 Disease denotes infected MESH:D007239
187 1284-1300 Disease denotes symptoms   Fever MESH:D051271
188 1313-1318 Disease denotes Cough MESH:D003371
189 1357-1364 Disease denotes Fatigue MESH:D005221
190 1399-1418 Disease denotes shortness of breath MESH:D004417
191 1431-1443 Disease denotes Pharyngalgia MESH:D010608
192 1482-1490 Disease denotes Headache MESH:D006261
193 1501-1507 Disease denotes Nausea MESH:D009325
194 1515-1523 Disease denotes vomiting MESH:D014839
195 1532-1540 Disease denotes Diarrhea MESH:D003967
197 933-940 Species denotes Patient Tax:9606
199 2268-2276 Species denotes patients Tax:9606
201 2340-2343 Gene denotes AST Gene:26503
203 2371-2376 Chemical denotes aData
206 2671-2674 Gene denotes AST Gene:26503
207 2709-2727 Gene denotes C-reactive protein Gene:1401
216 871-889 Gene denotes C-reactive protein Gene:1401
217 577-585 Species denotes Patients Tax:9606
218 657-664 Species denotes patient Tax:9606
219 850-858 Species denotes patients Tax:9606
220 915-923 Species denotes patients Tax:9606
221 648-656 Disease denotes infected MESH:D007239
222 703-708 Disease denotes Fever MESH:D005334
223 721-726 Disease denotes cough MESH:D003371

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 781-791 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T12 802-806 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T13 882-889 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T14 1377-1382 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T15 1456-1462 Body_part denotes Muscle http://purl.org/sig/ont/fma/fma32558
T16 1625-1641 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T17 1637-1641 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T18 1690-1700 Body_part denotes Lymphocyte http://purl.org/sig/ont/fma/fma62863
T19 1757-1768 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T20 1819-1831 Body_part denotes neutrophilic http://purl.org/sig/ont/fma/fma62860
T21 1832-1843 Body_part denotes granulocyte http://purl.org/sig/ont/fma/fma62854
T22 1896-1905 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T23 1948-1958 Body_part denotes Hemoglobin http://purl.org/sig/ont/fma/fma62293
T24 2159-2166 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T25 2314-2321 Body_part denotes alanine http://purl.org/sig/ont/fma/fma82749
T26 2550-2566 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T27 2562-2566 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T28 2574-2584 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T29 2600-2611 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T30 2621-2633 Body_part denotes neutrophilic http://purl.org/sig/ont/fma/fma62860
T31 2634-2645 Body_part denotes granulocyte http://purl.org/sig/ont/fma/fma62854
T32 2655-2664 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T33 2693-2703 Body_part denotes hemoglobin http://purl.org/sig/ont/fma/fma62293
T34 2720-2727 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T17 1377-1382 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T18 1631-1636 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T19 2556-2561 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T34 471-480 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T35 1532-1540 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T38 73-77 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T39 73-77 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T40 98-104 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T41 217-219 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T42 802-806 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T43 969-973 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T44 1034-1035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 1089-1091 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T46 1101-1103 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T47 1134-1138 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T48 1134-1138 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T49 1195-1197 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T50 1377-1382 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T51 1456-1462 http://purl.obolibrary.org/obo/UBERON_0001630 denotes Muscle
T52 1456-1462 http://purl.obolibrary.org/obo/UBERON_0005090 denotes Muscle
T53 1456-1462 http://www.ebi.ac.uk/efo/EFO_0000801 denotes Muscle
T54 1456-1462 http://www.ebi.ac.uk/efo/EFO_0001949 denotes Muscle
T55 1588-1595 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T56 1631-1636 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T57 1637-1641 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T58 1678-1680 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T59 1896-1905 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T60 2177-2179 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T61 2556-2561 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T62 2562-2566 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T63 2655-2664 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T64 2822-2824 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 73-77 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T13 882-889 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T14 1052-1057 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T15 1948-1958 Chemical denotes Hemoglobin http://purl.obolibrary.org/obo/CHEBI_5656
T16 2047-2050 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T17 2091-2099 Chemical denotes Creatine http://purl.obolibrary.org/obo/CHEBI_16919
T18 2159-2166 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T19 2314-2321 Chemical denotes alanine http://purl.obolibrary.org/obo/CHEBI_16449
T20 2340-2343 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T21 2344-2353 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T24 2671-2674 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T25 2676-2684 Chemical denotes creatine http://purl.obolibrary.org/obo/CHEBI_16919|http://purl.obolibrary.org/obo/CHEBI_57947
T27 2693-2703 Chemical denotes hemoglobin http://purl.obolibrary.org/obo/CHEBI_35143
T28 2720-2727 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T24 471-480 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T25 703-708 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T26 721-726 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T27 1295-1300 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T28 1313-1318 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T29 1357-1364 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T30 1399-1418 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T31 1431-1443 Phenotype denotes Pharyngalgia http://purl.obolibrary.org/obo/HP_0033050
T32 1482-1490 Phenotype denotes Headache http://purl.obolibrary.org/obo/HP_0002315
T33 1501-1523 Phenotype denotes Nausea and/or vomiting http://purl.obolibrary.org/obo/HP_0002017
T34 1532-1540 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T73 0-20 Sentence denotes Patient demographics
T74 21-150 Sentence denotes Of 88 patients in the study cohort, 51 (58.0%) were male and 37 (42.0%) were female; mean age was 42.7 years (range, 4–82 years).
T75 151-246 Sentence denotes Fifty-three (60.2%) patients had 2 CTs, 24 (27.2%) had 3 CTs, and 11 (12.5%) had 4 or more CTs.
T76 247-346 Sentence denotes The mean time interval between symptom onset and baseline CT was 5.5 ± 3.5 days (range, 1–15 days).
T77 347-441 Sentence denotes Five (5.7%) patients in the study cohort were known to have been discharged from the hospital.
T78 442-514 Sentence denotes All of the patients had mild pneumonia based on the WHO definition [10].
T79 515-576 Sentence denotes The demographics of the study cohort are detailed in Table 1.
T80 577-702 Sentence denotes Patients with exposure history (recent travel to Wuhan or contact with infected patient) accounted for 85.2% of study cohort.
T81 703-776 Sentence denotes Fever (84.1%) and cough (56.8%) were the most common presenting symptoms.
T82 777-924 Sentence denotes Low lymphocyte and white cell counts were observed in 26.4% and 25.0% of patients, while high C-reactive protein was observed in 55.0% of patients.
T83 925-981 Sentence denotes Table 1 Patient demographics and laboratory test results
T84 982-1022 Sentence denotes Characteristic Patient with NCP (n = 88)
T85 1023-1047 Sentence denotes Age (years)a 42.7 ± 14.5
T86 1048-1065 Sentence denotes Age group (years)
T87 1066-1080 Sentence denotes   < 15 2 (2.3)
T88 1081-1098 Sentence denotes   15–44 48 (54.5)
T89 1099-1116 Sentence denotes   45–64 28 (31.8)
T90 1117-1133 Sentence denotes   ≥ 65 10 (11.4)
T91 1134-1152 Sentence denotes Male sex 51 (58.0)
T92 1153-1169 Sentence denotes Exposure history
T93 1170-1204 Sentence denotes   Recent travel to Wuhan 45 (51.1)
T94 1205-1246 Sentence denotes   Contact with infected patient 30 (34.1)
T95 1247-1275 Sentence denotes   Unknown exposure 13 (14.8)
T96 1276-1292 Sentence denotes Initial symptoms
T97 1293-1310 Sentence denotes   Fever 74 (84.1)
T98 1311-1328 Sentence denotes   Cough 50 (56.8)
T99 1329-1354 Sentence denotes   Expectoration 19 (21.6)
T100 1355-1374 Sentence denotes   Fatigue 15 (17.0)
T101 1375-1428 Sentence denotes   Chest distress and/or shortness of breath 12 (13.6)
T102 1429-1453 Sentence denotes   Pharyngalgia 10 (11.4)
T103 1454-1479 Sentence denotes   Muscle soreness 7 (8.0)
T104 1480-1498 Sentence denotes   Headache 5 (5.7)
T105 1499-1529 Sentence denotes   Nausea and/or vomiting 0 (0)
T106 1530-1546 Sentence denotes   Diarrhea 0 (0)
T107 1547-1576 Sentence denotes   No obvious symptoms 3 (3.4)
T108 1577-1622 Sentence denotes Laboratory testing at initial hospital visitb
T109 1623-1687 Sentence denotes   White blood cell count (–, ↑, ↓) 62 (70.5), 4 (4.5), 22 (25.0)
T110 1688-1746 Sentence denotes   Lymphocyte count (–, ↑, ↓) 62 (71.3), 2 (2.3), 23 (26.4)
T111 1747-1808 Sentence denotes   Percent lymphocytes (–, ↑, ↓) 55 (62.5), 7 (8.0), 26 (29.5)
T112 1809-1885 Sentence denotes   Percent neutrophilic granulocyte (–, ↑, ↓) 59 (67.1), 17 (19.3), 12 (13.6)
T113 1886-1945 Sentence denotes   Percent monocytes (–, ↑, ↓) 59 (67.1), 26 (29.5), 3 (3.4)
T114 1946-1998 Sentence denotes   Hemoglobin (–, ↑, ↓) 68 (77.3), 8 (9.1), 12 (13.6)
T115 1999-2044 Sentence denotes   ALT (–, ↑, ↓) 70 (79.5), 16 (18.2), 2 (2.3)
T116 2045-2088 Sentence denotes   AST (–, ↑, ↓) 73 (83.0), 15 (17.0), 0 (0)
T117 2089-2145 Sentence denotes   Creatine kinase (–, ↑, ↓) 73 (84.9), 4 (4.6), 9 (10.5)
T118 2146-2204 Sentence denotes   C-reactive protein (–, ↑, ↓) 36 (45.0), 44 (55.0), 0 (0)
T119 2205-2309 Sentence denotes Unless otherwise indicated, data are reported as the number of patients, with percentages in parentheses
T120 2310-2370 Sentence denotes ALT alanine aminotransferase, AST aspartate aminotransferase
T121 2371-2423 Sentence denotes aData are reported as the mean ± standard derivation
T122 2424-2532 Sentence denotes bThe signs –, ↑, and ↓ represent within, above, and below normal ranges of laboratory results, respectively.
T123 2533-2869 Sentence denotes Normal ranges of white blood cell count, lymphocyte count, percent lymphocytes, percent neutrophilic granulocyte, percent monocytes, ALT, AST, creatine kinase, hemoglobin, and C-reactive protein were 3.5–9.5 × 109/L, 1.10–3.20 × 109/L, 20–50%, 3.0–10.0%, 40–75%, 115–150 g/L, 7–40 U/L, 13–35 U/L, 40–200 U/L, and 0–10 mg/L, respectively