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PMC:7156291 / 14966-16098 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
278 807-823 Disease denotes Pleural effusion MESH:D010996
279 860-875 Disease denotes Lymphadenopathy MESH:D008206

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T38 978-982 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T25 807-823 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T26 978-982 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 860-875 Disease denotes Lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T83 111-113 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T84 807-823 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T85 978-982 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T86 978-982 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T87 1107-1109 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T88 1125-1127 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T29 1007-1009 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T35 146-165 Phenotype denotes Pulmonary opacities http://purl.obolibrary.org/obo/HP_0031457
T36 807-823 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T37 860-875 Phenotype denotes Lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T148 0-50 Sentence denotes Characteristic Time after disease onset χ2 p value
T149 51-145 Sentence denotes Days 0–3 (n = 37) Days 4–7 (n = 69) Days 8–10 (n = 53) Days 11–14 (n = 49) Days 15–21 (n = 25)
T150 146-165 Sentence denotes Pulmonary opacities
T151 166-229 Sentence denotes   GGO only 8 (21.6) 13 (18.8) 7 (13.2) 4 (8.2) 1 (4.0) 6.6 0.16
T152 230-311 Sentence denotes   GGO and consolidation 12 (32.4) 26 (37.7) 8 (15.1) 5 (10.1) 1 (4.0) 22.2 < 0.01
T153 312-388 Sentence denotes   GGO and linear opacities 2 (5.4) 2 (2.9) 4 (7.5) 2 (4.1) 2 (8.0) 1.87 0.76
T154 389-459 Sentence denotes   Consolidation only 1 (2.8) 6 (8.7) 3 (5.7) 4 (8.2) 1 (4.0) 1.98 0.74
T155 460-544 Sentence denotes   Consolidation and linear opacities 0 (0) 2 (2.9) 4 (7.5) 4 (8.2) 3 (12.0) 6.0 0.19
T156 545-649 Sentence denotes   GGO, consolidation, and linear opacities 12 (32.4) 19 (27.5) 25 (47.2) 30 (61.2) 17 (68.0) 21.5 < 0.01
T157 650-712 Sentence denotes   Negative CT 2 (5.4) 1 (1.5) 2 (3.8) 0 (0.0) 0 (0.0) 4.3 0.36
T158 713-727 Sentence denotes Other findings
T159 728-804 Sentence denotes   Discrete pulmonary nodules 4 (10.8) 4 (5.8) 3 (5.7) 1 (2.0) 0 (0) 4.8 0.36
T160 805-857 Sentence denotes   Pleural effusion 0 (0) 0 (0) 0 (0) 0 (0) 0 (0) – –
T161 858-909 Sentence denotes   Lymphadenopathy 0 (0) 0 (0) 0 (0) 0 (0) 0 (0) – –
T162 910-971 Sentence denotes   Cavitation 3 (8.1) 3 (4.3) 1 (1.9) 2 (4.1) 1 (4.0) 2.1 0.72
T163 972-997 Sentence denotes Total lung severity score
T164 998-1066 Sentence denotes   Mean ± SD 3.9 ± 2.7 4.8 ± 2.9 4.9 ± 2.8 5.3 ± 3.3 5.2 ± 2.8 – 0.29
T165 1067-1132 Sentence denotes   Median (range) 4 (0–10) 5 (0–12) 5 (0–11) 5 (1–13) 5 (1–11) – –