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PMC:7153689 / 4012-5182 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 119-135 Body_part denotes Ribonucleic acid http://purl.org/sig/ont/fma/fma67095
T2 274-279 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T3 281-286 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T4 291-296 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T5 495-498 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 274-279 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 281-286 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T4 291-296 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T27 235-243 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 235-239 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T25 246-251 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 274-279 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T27 274-279 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T28 542-546 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T29 603-610 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T30 749-761 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T31 840-841 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 914-919 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 966-967 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1032-1037 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 131-135 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 409-418 http://purl.obolibrary.org/obo/GO_0006810 denotes transport

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T29 0-75 Sentence denotes The sources and accessibility of specimens are also critical for diagnosis.
T30 76-230 Sentence denotes For upper respiratory specimens, the viral Ribonucleic acid yield from nasopharyngeal swabs seems to offer more accurate results than oropharyngeal swabs.
T31 231-401 Sentence denotes The SARS-CoV-2 virus is also detectable in blood, urine and stool; such specimens are not as reliable for diagnosis but are important from the transmission point of view.
T32 402-547 Sentence denotes Proper transport and handling of specimens is necessary to ensure the integrity of the viral RNA and, hence, the accuracy of the diagnostic test.
T33 548-773 Sentence denotes Adherence to biosafety practices is essential, and any testing should be performed in appropriately equipped laboratories by staff trained in the relevant technical and safety procedures (World Health Organization, 2020) (8).
T34 774-1031 Sentence denotes Non-propagative diagnostic laboratory work should be conducted at a biosafety level 2 (BSL-2) facility, whereas propagative work, including virus culture and isolation, should be conducted at a containment laboratory with inward directional airflow (BSL-3).
T35 1032-1170 Sentence denotes Virus isolation is not routine but necessary for characterisation and to support the development of vaccines and other therapeutic agents.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T42 86-97 UBERON:0001004 denotes respiratory
T43 113-118 NCBITaxon:10239 denotes viral
T44 131-135 CHEBI:37527;CHEBI:37527 denotes acid
T45 147-161 UBERON:0001728 denotes nasopharyngeal
T46 210-223 UBERON:0000165 denotes oropharyngeal
T47 235-245 SP_7 denotes SARS-CoV-2
T48 246-251 NCBITaxon:10239 denotes virus
T49 274-279 UBERON:0000178 denotes blood
T50 281-286 UBERON:0001088 denotes urine
T51 291-296 UBERON:0001988 denotes stool
T52 489-494 NCBITaxon:10239 denotes viral
T53 914-919 NCBITaxon:10239 denotes virus
T54 1151-1169 CHEBI:52217;CHEBI:52217 denotes therapeutic agents
T85468 86-97 UBERON:0001004 denotes respiratory
T95354 113-118 NCBITaxon:10239 denotes viral
T87999 131-135 CHEBI:37527;CHEBI:37527 denotes acid
T5314 147-161 UBERON:0001728 denotes nasopharyngeal
T15377 210-223 UBERON:0000165 denotes oropharyngeal
T18502 235-245 SP_7 denotes SARS-CoV-2
T36018 246-251 NCBITaxon:10239 denotes virus
T16180 274-279 UBERON:0000178 denotes blood
T55406 281-286 UBERON:0001088 denotes urine
T3946 291-296 UBERON:0001988 denotes stool
T3533 489-494 NCBITaxon:10239 denotes viral
T28834 914-919 NCBITaxon:10239 denotes virus
T78210 1151-1169 CHEBI:52217;CHEBI:52217 denotes therapeutic agents