> top > docs > PMC:7152911 > spans > 73517-75240 > annotations

PMC:7152911 / 73517-75240 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_standard_notation
1475 1471-1473 Mutation denotes ΔG c.delG

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T160 420-428 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T161 873-881 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T491 135-136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T492 364-365 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T493 472-473 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T494 509-512 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T495 574-575 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T496 1063-1064 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T497 1172-1173 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T498 1232-1235 http://purl.obolibrary.org/obo/CLO_0002781 denotes d/k
T499 1236-1237 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T500 1427-1428 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T501 1462-1463 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T502 1534-1535 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T112 433-440 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T14655 549-557 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T46634 1646-1654 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T605 0-72 Sentence denotes 2.4 Thermodynamics of pathogen-biorecognition element binding reactions
T606 73-334 Sentence denotes While the rate of biosensor response is typically governed by a mass transfer-limited heterogeneous reaction between the immobilized biorecognition element and target species, the net change in the biosensor response is dependent on the reaction thermodynamics.
T607 335-524 Sentence denotes The binding affinity between a biorecognition element and target species, such as an antibody and antigen, is often reported in terms of a dissociation constant (K D), which has units of M.
T608 525-735 Sentence denotes While the value of K D, solution = 1 nM provides a reasonable estimate for biosensor design considerations, such as understanding the mass transfer limitations associated with biosensor response (Squires et al.
T609 736-882 Sentence denotes 2008), the binding affinity of antibodies can vary by orders of magnitude depending on the pathogen of interest and the clonality of the antibody.
T610 883-1026 Sentence denotes One important consideration when immobilizing biorecognition elements is potential effects of immobilization on binding affinity to the target.
T611 1027-1099 Sentence denotes Traditionally, K D is obtained from a kinetic or thermodynamic analysis.
T612 1100-1238 Sentence denotes Kinetic analyses measure association and dissociation rate constants (k a and k d, respectively) and enable calculation of K D as k d/k a.
T613 1239-1533 Sentence denotes Thermodynamic analyses, such as calorimetric techniques, measure the binding enthalpy and entropy, which in turn provides the standard Gibbs free energy of the reaction (ΔG°), and thus, K A = K D −1 though the expression K A = exp(-ΔG°/RT), where R is the gas constant and T is the temperature.
T614 1534-1723 Sentence denotes A detailed discussion of the kinetics and thermodynamics of biorecognition element-target binding reactions for solution- and surface-based biosensors is provided in Supporting Information.

2_test

Id Subject Object Predicate Lexical cue
32364936-18392027-7713101 736-740 18392027 denotes 2008