PMC:7152911 / 122453-123526
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7152911","sourcedb":"PMC","sourceid":"7152911","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7152911","text":"Several comprehensive reviews have been published on traditional bioanalytical assays and biosensor-based assays for pathogen detection in medical diagnostics applications (Ahmed et al., 2014; da Silva et al., 2017; Singh et al., 2014). Common pathogens include the aforementioned foodborne, waterborne, and environmental pathogens (e.g., Mycobacterium and Plasmodium spp.), as well as additional airborne and bloodborne pathogens. Pathogens such as Mycobacterium, HIV, and Plasmodium falciparum, represent some of the top causes of death from infectious diseases worldwide (WHO, 2018a). Other common pathogens associated with medical diagnostics applications include those that cause respiratory infections, urinary tract infections, and diarrheal diseases, such as CD and MRSA, which can be life-threatening to the children, elderly and individuals with compromised immune systems. Other airborne and bloodborne pathogens of interest include the influenza virus, COVID-19, hepatitis virus, rabies virus, and bacteria such as Mycoplasma pneumonia and Bordetella pertussis.","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"1927","span":{"begin":474,"end":495},"obj":"Species"},{"id":"1928","span":{"begin":817,"end":825},"obj":"Species"},{"id":"1929","span":{"begin":948,"end":963},"obj":"Species"},{"id":"1930","span":{"begin":992,"end":1004},"obj":"Species"},{"id":"1931","span":{"begin":339,"end":352},"obj":"Species"},{"id":"1932","span":{"begin":357,"end":367},"obj":"Species"},{"id":"1933","span":{"begin":450,"end":463},"obj":"Species"},{"id":"1934","span":{"begin":465,"end":468},"obj":"Species"},{"id":"1935","span":{"begin":767,"end":769},"obj":"Species"},{"id":"1936","span":{"begin":533,"end":538},"obj":"Disease"},{"id":"1937","span":{"begin":544,"end":563},"obj":"Disease"},{"id":"1938","span":{"begin":685,"end":707},"obj":"Disease"},{"id":"1939","span":{"begin":723,"end":733},"obj":"Disease"},{"id":"1940","span":{"begin":739,"end":757},"obj":"Disease"},{"id":"1941","span":{"begin":965,"end":973},"obj":"Disease"},{"id":"1942","span":{"begin":975,"end":990},"obj":"Disease"},{"id":"1943","span":{"begin":1038,"end":1047},"obj":"Disease"}],"attributes":[{"id":"A1927","pred":"tao:has_database_id","subj":"1927","obj":"Tax:5833"},{"id":"A1928","pred":"tao:has_database_id","subj":"1928","obj":"Tax:9606"},{"id":"A1929","pred":"tao:has_database_id","subj":"1929","obj":"Tax:11309"},{"id":"A1930","pred":"tao:has_database_id","subj":"1930","obj":"Tax:11292"},{"id":"A1931","pred":"tao:has_database_id","subj":"1931","obj":"Tax:1773"},{"id":"A1932","pred":"tao:has_database_id","subj":"1932","obj":"Tax:5833"},{"id":"A1933","pred":"tao:has_database_id","subj":"1933","obj":"Tax:1773"},{"id":"A1934","pred":"tao:has_database_id","subj":"1934","obj":"Tax:12721"},{"id":"A1935","pred":"tao:has_database_id","subj":"1935","obj":"Tax:1496"},{"id":"A1936","pred":"tao:has_database_id","subj":"1936","obj":"MESH:D003643"},{"id":"A1937","pred":"tao:has_database_id","subj":"1937","obj":"MESH:D003141"},{"id":"A1938","pred":"tao:has_database_id","subj":"1938","obj":"MESH:D012141"},{"id":"A1939","pred":"tao:has_database_id","subj":"1939","obj":"MESH:D007239"},{"id":"A1940","pred":"tao:has_database_id","subj":"1940","obj":"MESH:D004403"},{"id":"A1941","pred":"tao:has_database_id","subj":"1941","obj":"MESH:C000657245"},{"id":"A1942","pred":"tao:has_database_id","subj":"1942","obj":"MESH:D006525"},{"id":"A1943","pred":"tao:has_database_id","subj":"1943","obj":"MESH:D011014"},{"subj":"1927","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1928","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1929","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1930","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1931","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1932","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1933","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1934","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1935","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1936","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1937","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1938","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1939","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1940","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1941","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1942","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1943","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T31","span":{"begin":465,"end":468},"obj":"Body_part"},{"id":"T32","span":{"begin":709,"end":722},"obj":"Body_part"},{"id":"T33","span":{"begin":868,"end":882},"obj":"Body_part"}],"attributes":[{"id":"A31","pred":"fma_id","subj":"T31","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A32","pred":"fma_id","subj":"T32","obj":"http://purl.org/sig/ont/fma/fma0326482"},{"id":"A33","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma9825"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T29","span":{"begin":868,"end":882},"obj":"Body_part"}],"attributes":[{"id":"A29","pred":"uberon_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/UBERON_0002405"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T109","span":{"begin":544,"end":554},"obj":"Disease"},{"id":"T110","span":{"begin":685,"end":707},"obj":"Disease"},{"id":"T111","span":{"begin":709,"end":733},"obj":"Disease"},{"id":"T113","span":{"begin":739,"end":757},"obj":"Disease"},{"id":"T114","span":{"begin":774,"end":778},"obj":"Disease"},{"id":"T115","span":{"begin":948,"end":957},"obj":"Disease"},{"id":"T116","span":{"begin":965,"end":973},"obj":"Disease"},{"id":"T117","span":{"begin":975,"end":984},"obj":"Disease"},{"id":"T118","span":{"begin":992,"end":998},"obj":"Disease"},{"id":"T119","span":{"begin":1027,"end":1047},"obj":"Disease"},{"id":"T120","span":{"begin":1038,"end":1047},"obj":"Disease"},{"id":"T121","span":{"begin":1063,"end":1072},"obj":"Disease"}],"attributes":[{"id":"A109","pred":"mondo_id","subj":"T109","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A110","pred":"mondo_id","subj":"T110","obj":"http://purl.obolibrary.org/obo/MONDO_0024355"},{"id":"A111","pred":"mondo_id","subj":"T111","obj":"http://purl.obolibrary.org/obo/MONDO_0001650"},{"id":"A112","pred":"mondo_id","subj":"T111","obj":"http://purl.obolibrary.org/obo/MONDO_0005247"},{"id":"A113","pred":"mondo_id","subj":"T113","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A114","pred":"mondo_id","subj":"T114","obj":"http://purl.obolibrary.org/obo/MONDO_0100073"},{"id":"A115","pred":"mondo_id","subj":"T115","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A116","pred":"mondo_id","subj":"T116","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A117","pred":"mondo_id","subj":"T117","obj":"http://purl.obolibrary.org/obo/MONDO_0002251"},{"id":"A118","pred":"mondo_id","subj":"T118","obj":"http://purl.obolibrary.org/obo/MONDO_0019173"},{"id":"A119","pred":"mondo_id","subj":"T119","obj":"http://purl.obolibrary.org/obo/MONDO_0005867"},{"id":"A120","pred":"mondo_id","subj":"T120","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A121","pred":"mondo_id","subj":"T121","obj":"http://purl.obolibrary.org/obo/MONDO_0005077"},{"subj":"T109","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T110","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T111","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T113","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T114","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T115","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T116","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T117","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T118","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T119","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T120","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T121","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T138","span":{"begin":193,"end":195},"obj":"http://www.ebi.ac.uk/efo/EFO_0000265"},{"id":"T139","span":{"begin":709,"end":722},"obj":"http://purl.obolibrary.org/obo/UBERON_0001008"},{"id":"T140","span":{"begin":868,"end":882},"obj":"http://purl.obolibrary.org/obo/UBERON_0002405"},{"id":"T141","span":{"begin":958,"end":963},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T142","span":{"begin":985,"end":990},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T143","span":{"begin":999,"end":1004},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T144","span":{"begin":1010,"end":1018},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_2"}],"attributes":[{"subj":"T138","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T139","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T140","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T141","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T142","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T143","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T144","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T88200","span":{"begin":767,"end":769},"obj":"Chemical"}],"attributes":[{"id":"A44408","pred":"chebi_id","subj":"T88200","obj":"http://purl.obolibrary.org/obo/CHEBI_8673"},{"subj":"T88200","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T17","span":{"begin":685,"end":707},"obj":"Phenotype"},{"id":"T18","span":{"begin":709,"end":733},"obj":"Phenotype"},{"id":"T19","span":{"begin":975,"end":984},"obj":"Phenotype"},{"id":"T20","span":{"begin":1038,"end":1047},"obj":"Phenotype"}],"attributes":[{"id":"A17","pred":"hp_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/HP_0011947"},{"id":"A18","pred":"hp_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/HP_0000010"},{"id":"A19","pred":"hp_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/HP_0012115"},{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T991","span":{"begin":0,"end":236},"obj":"Sentence"},{"id":"T992","span":{"begin":237,"end":431},"obj":"Sentence"},{"id":"T993","span":{"begin":432,"end":587},"obj":"Sentence"},{"id":"T994","span":{"begin":588,"end":883},"obj":"Sentence"},{"id":"T995","span":{"begin":884,"end":1073},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T991","pred":"source","obj":"LitCovid-sentences"},{"subj":"T992","pred":"source","obj":"LitCovid-sentences"},{"subj":"T993","pred":"source","obj":"LitCovid-sentences"},{"subj":"T994","pred":"source","obj":"LitCovid-sentences"},{"subj":"T995","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32364936-24982325-7713174","span":{"begin":187,"end":191},"obj":"24982325"}],"attributes":[{"subj":"32364936-24982325-7713174","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93ece4","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#ecca93"},{"id":"LitCovid-PD-UBERON","color":"#b093ec"},{"id":"LitCovid-PD-MONDO","color":"#93ec96"},{"id":"LitCovid-PD-CLO","color":"#ec93a9"},{"id":"LitCovid-PD-CHEBI","color":"#93c3ec"},{"id":"LitCovid-PD-HP","color":"#ddec93"},{"id":"LitCovid-sentences","color":"#e093ec"},{"id":"2_test","color":"#93ecc6"}]}]}}