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PMC:7152526 / 7987-9060 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
216 757-760 Gene denotes CRP Gene:1401
217 765-769 Gene denotes IL-6 Gene:3569
218 238-248 Species denotes SARS-CoV-2 Tax:2697049
219 446-453 Species denotes patient Tax:9606
220 822-832 Species denotes SARS-CoV-2 Tax:2697049
221 958-965 Species denotes patient Tax:9606
222 1036-1046 Species denotes SARS-CoV-2 Tax:2697049
223 95-103 Disease denotes COVID-19 MESH:C000657245
224 137-145 Disease denotes COVID-19 MESH:C000657245
225 157-162 Disease denotes fever MESH:D005334
226 164-169 Disease denotes cough MESH:D003371
227 174-183 Disease denotes pneumonia MESH:D011014
228 542-554 Disease denotes Leukocytosis MESH:D007964
229 559-570 Disease denotes lymphopenia MESH:D008231

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T54 23-29 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T55 313-319 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T56 393-396 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T57 415-421 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T58 522-528 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T59 617-623 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T60 685-690 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T61 928-934 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T20 685-690 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T56 95-103 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T57 137-145 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 174-183 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T59 238-246 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 380-382 Disease denotes OD http://purl.obolibrary.org/obo/MONDO_0017178
T61 559-570 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T62 822-830 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 1036-1044 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T94 23-29 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T95 48-49 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 50-54 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T97 50-54 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T98 108-110 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T99 313-319 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T100 415-421 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T101 522-528 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T102 617-623 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T103 685-690 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T104 928-934 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T48 50-54 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T49 55-60 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T50 293-298 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T52 765-767 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T68 0-116 Sentence denotes On day 6, convalescent plasma was obtained from a male donor in his 20s who had recovered from COVID-19 for 18 days.
T69 117-292 Sentence denotes He was diagnosed as COVID-19 presenting fever, cough and pneumonia however, showed complete recovery and serial PCRs for SARS-CoV-2 were all negative after hospital discharge.
T70 293-379 Sentence denotes Donor screening and plasma collection were performed as mentioned above in the Case 1.
T71 380-480 Sentence denotes OD ratio for IgG was 0.532 and the plasma was administered to the patient in the same way as Case 1.
T72 481-541 Sentence denotes There was no adverse reaction during the plasma transfusion.
T73 542-633 Sentence denotes Leukocytosis and lymphopenia were immediately recovered after convalescent plasma infusion.
T74 634-743 Sentence denotes On day 9, the density of bilateral infiltration on chest X-ray much improved with increased PaO2/FiO2 to 230.
T75 744-811 Sentence denotes The level of CRP and IL-6 also recovered to the normal range (Figs.
T76 812-821 Sentence denotes 3 and 4).
T77 822-953 Sentence denotes SARS-CoV-2 was quantified by rRT-PCR; the value of Ct changed from 20.51 on day 5 to 36.33 on day 9 after plasma infusion (Fig. 3).
T78 954-1035 Sentence denotes The patient is successfully extubated and discharged from the hospital on day 24.
T79 1036-1073 Sentence denotes SARS-CoV-2 was negative after day 20.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T22 157-162 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 164-169 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T24 174-183 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T25 542-554 Phenotype denotes Leukocytosis http://purl.obolibrary.org/obo/HP_0001974
T26 559-570 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T130 23-29 UBERON:0001969 denotes plasma
T131 95-103 SP_7 denotes COVID-19
T132 137-145 SP_7 denotes COVID-19
T133 238-248 SP_7 denotes SARS-CoV-2
T134 313-319 UBERON:0001969 denotes plasma
T135 393-396 GO:0071735 denotes IgG
T136 415-421 UBERON:0001969 denotes plasma
T137 522-528 UBERON:0001969 denotes plasma
T138 542-554 GO:0030097 denotes Leukocytosis
T139 617-623 UBERON:0001969 denotes plasma
T140 685-690 UBERON:0001443 denotes chest
T141 731-735 CHEBI:16526;CHEBI:16526 denotes FiO2
T142 765-769 PR:000001393 denotes IL-6
T143 822-832 SP_7 denotes SARS-CoV-2
T144 928-934 UBERON:0001969 denotes plasma
T145 1036-1046 SP_7 denotes SARS-CoV-2
T25654 23-29 UBERON:0001969 denotes plasma
T5271 95-103 SP_7 denotes COVID-19
T61228 137-145 SP_7 denotes COVID-19
T31901 238-248 SP_7 denotes SARS-CoV-2
T13022 313-319 UBERON:0001969 denotes plasma
T37806 393-396 GO:0071735 denotes IgG
T54581 415-421 UBERON:0001969 denotes plasma
T19324 522-528 UBERON:0001969 denotes plasma
T27526 542-554 GO:0030097 denotes Leukocytosis
T11675 617-623 UBERON:0001969 denotes plasma
T42711 685-690 UBERON:0001443 denotes chest
T14060 731-735 CHEBI:16526;CHEBI:16526 denotes FiO2
T41119 765-769 PR:000001393 denotes IL-6
T78944 822-832 SP_7 denotes SARS-CoV-2
T92484 928-934 UBERON:0001969 denotes plasma
T49632 1036-1046 SP_7 denotes SARS-CoV-2