PMC:7152526 / 7987-9060
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
216 | 757-760 | Gene | denotes | CRP | Gene:1401 |
217 | 765-769 | Gene | denotes | IL-6 | Gene:3569 |
218 | 238-248 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
219 | 446-453 | Species | denotes | patient | Tax:9606 |
220 | 822-832 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
221 | 958-965 | Species | denotes | patient | Tax:9606 |
222 | 1036-1046 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
223 | 95-103 | Disease | denotes | COVID-19 | MESH:C000657245 |
224 | 137-145 | Disease | denotes | COVID-19 | MESH:C000657245 |
225 | 157-162 | Disease | denotes | fever | MESH:D005334 |
226 | 164-169 | Disease | denotes | cough | MESH:D003371 |
227 | 174-183 | Disease | denotes | pneumonia | MESH:D011014 |
228 | 542-554 | Disease | denotes | Leukocytosis | MESH:D007964 |
229 | 559-570 | Disease | denotes | lymphopenia | MESH:D008231 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T54 | 23-29 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T55 | 313-319 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T56 | 393-396 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T57 | 415-421 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T58 | 522-528 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T59 | 617-623 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T60 | 685-690 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
T61 | 928-934 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T20 | 685-690 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T56 | 95-103 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T57 | 137-145 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T58 | 174-183 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T59 | 238-246 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T60 | 380-382 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
T61 | 559-570 | Disease | denotes | lymphopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
T62 | 822-830 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T63 | 1036-1044 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T94 | 23-29 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T95 | 48-49 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T96 | 50-54 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
T97 | 50-54 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
T98 | 108-110 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T99 | 313-319 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T100 | 415-421 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T101 | 522-528 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T102 | 617-623 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T103 | 685-690 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
T104 | 928-934 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T48 | 50-54 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
T49 | 55-60 | Chemical | denotes | donor | http://purl.obolibrary.org/obo/CHEBI_17891 |
T50 | 293-298 | Chemical | denotes | Donor | http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891 |
T52 | 765-767 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T68 | 0-116 | Sentence | denotes | On day 6, convalescent plasma was obtained from a male donor in his 20s who had recovered from COVID-19 for 18 days. |
T69 | 117-292 | Sentence | denotes | He was diagnosed as COVID-19 presenting fever, cough and pneumonia however, showed complete recovery and serial PCRs for SARS-CoV-2 were all negative after hospital discharge. |
T70 | 293-379 | Sentence | denotes | Donor screening and plasma collection were performed as mentioned above in the Case 1. |
T71 | 380-480 | Sentence | denotes | OD ratio for IgG was 0.532 and the plasma was administered to the patient in the same way as Case 1. |
T72 | 481-541 | Sentence | denotes | There was no adverse reaction during the plasma transfusion. |
T73 | 542-633 | Sentence | denotes | Leukocytosis and lymphopenia were immediately recovered after convalescent plasma infusion. |
T74 | 634-743 | Sentence | denotes | On day 9, the density of bilateral infiltration on chest X-ray much improved with increased PaO2/FiO2 to 230. |
T75 | 744-811 | Sentence | denotes | The level of CRP and IL-6 also recovered to the normal range (Figs. |
T76 | 812-821 | Sentence | denotes | 3 and 4). |
T77 | 822-953 | Sentence | denotes | SARS-CoV-2 was quantified by rRT-PCR; the value of Ct changed from 20.51 on day 5 to 36.33 on day 9 after plasma infusion (Fig. 3). |
T78 | 954-1035 | Sentence | denotes | The patient is successfully extubated and discharged from the hospital on day 24. |
T79 | 1036-1073 | Sentence | denotes | SARS-CoV-2 was negative after day 20. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T22 | 157-162 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T23 | 164-169 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T24 | 174-183 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T25 | 542-554 | Phenotype | denotes | Leukocytosis | http://purl.obolibrary.org/obo/HP_0001974 |
T26 | 559-570 | Phenotype | denotes | lymphopenia | http://purl.obolibrary.org/obo/HP_0001888 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T130 | 23-29 | UBERON:0001969 | denotes | plasma |
T131 | 95-103 | SP_7 | denotes | COVID-19 |
T132 | 137-145 | SP_7 | denotes | COVID-19 |
T133 | 238-248 | SP_7 | denotes | SARS-CoV-2 |
T134 | 313-319 | UBERON:0001969 | denotes | plasma |
T135 | 393-396 | GO:0071735 | denotes | IgG |
T136 | 415-421 | UBERON:0001969 | denotes | plasma |
T137 | 522-528 | UBERON:0001969 | denotes | plasma |
T138 | 542-554 | GO:0030097 | denotes | Leukocytosis |
T139 | 617-623 | UBERON:0001969 | denotes | plasma |
T140 | 685-690 | UBERON:0001443 | denotes | chest |
T141 | 731-735 | CHEBI:16526;CHEBI:16526 | denotes | FiO2 |
T142 | 765-769 | PR:000001393 | denotes | IL-6 |
T143 | 822-832 | SP_7 | denotes | SARS-CoV-2 |
T144 | 928-934 | UBERON:0001969 | denotes | plasma |
T145 | 1036-1046 | SP_7 | denotes | SARS-CoV-2 |
T25654 | 23-29 | UBERON:0001969 | denotes | plasma |
T5271 | 95-103 | SP_7 | denotes | COVID-19 |
T61228 | 137-145 | SP_7 | denotes | COVID-19 |
T31901 | 238-248 | SP_7 | denotes | SARS-CoV-2 |
T13022 | 313-319 | UBERON:0001969 | denotes | plasma |
T37806 | 393-396 | GO:0071735 | denotes | IgG |
T54581 | 415-421 | UBERON:0001969 | denotes | plasma |
T19324 | 522-528 | UBERON:0001969 | denotes | plasma |
T27526 | 542-554 | GO:0030097 | denotes | Leukocytosis |
T11675 | 617-623 | UBERON:0001969 | denotes | plasma |
T42711 | 685-690 | UBERON:0001443 | denotes | chest |
T14060 | 731-735 | CHEBI:16526;CHEBI:16526 | denotes | FiO2 |
T41119 | 765-769 | PR:000001393 | denotes | IL-6 |
T78944 | 822-832 | SP_7 | denotes | SARS-CoV-2 |
T92484 | 928-934 | UBERON:0001969 | denotes | plasma |
T49632 | 1036-1046 | SP_7 | denotes | SARS-CoV-2 |