PMC:7152526 / 3727-5081
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 115 | 994-1011 | Species | denotes | Novel Coronavirus | Tax:2697049 |
| 116 | 1210-1217 | Species | denotes | patient | Tax:9606 |
| 117 | 901-911 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 118 | 107-125 | Chemical | denotes | methylprednisolone | MESH:D008775 |
| 119 | 89-93 | Disease | denotes | ARDS | MESH:D012128 |
| 120 | 255-263 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 121 | 297-305 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 122 | 317-322 | Disease | denotes | fever | MESH:D005334 |
| 123 | 324-329 | Disease | denotes | cough | MESH:D003371 |
| 124 | 334-343 | Disease | denotes | pneumonia | MESH:D011014 |
| 125 | 1012-1020 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T21 | 14-28 | Body_part | denotes | arterial blood | http://purl.org/sig/ont/fma/fma83066 |
| T22 | 183-189 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T23 | 422-428 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T24 | 454-459 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T25 | 491-497 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T26 | 560-565 | Body_part | denotes | veins | http://purl.org/sig/ont/fma/fma63814 |
| T27 | 643-648 | Body_part | denotes | Blood | http://purl.org/sig/ont/fma/fma9670 |
| T28 | 874-880 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T29 | 912-915 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T30 | 916-924 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T31 | 928-934 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T32 | 1021-1024 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T33 | 1112-1115 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T34 | 1152-1158 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T35 | 1347-1353 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T8 | 14-28 | Body_part | denotes | arterial blood | http://purl.obolibrary.org/obo/UBERON_0013755 |
| T9 | 23-28 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T10 | 454-459 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T11 | 643-648 | Body_part | denotes | Blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T38 | 89-93 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T39 | 255-263 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T40 | 297-305 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T41 | 334-343 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T42 | 901-909 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T43 | 1012-1020 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T44 | 1098-1100 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T41 | 14-22 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | arterial |
| T42 | 14-22 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | arterial |
| T43 | 23-28 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T44 | 23-28 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T45 | 183-189 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T46 | 208-209 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T47 | 210-214 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T48 | 210-214 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T49 | 422-428 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T50 | 442-445 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T51 | 454-459 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T52 | 454-459 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T53 | 491-497 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T54 | 560-565 | http://purl.obolibrary.org/obo/UBERON_0001638 | denotes | veins |
| T55 | 560-565 | http://www.ebi.ac.uk/efo/EFO_0000816 | denotes | veins |
| T56 | 600-605 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T57 | 643-648 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | Blood |
| T58 | 643-648 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | Blood |
| T59 | 874-880 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T60 | 928-934 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T61 | 1152-1158 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T62 | 1347-1353 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T21 | 107-125 | Chemical | denotes | methylprednisolone | http://purl.obolibrary.org/obo/CHEBI_6888 |
| T22 | 210-214 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T23 | 215-220 | Chemical | denotes | donor | http://purl.obolibrary.org/obo/CHEBI_17891 |
| T24 | 460-465 | Chemical | denotes | donor | http://purl.obolibrary.org/obo/CHEBI_17891 |
| T25 | 584-589 | Chemical | denotes | donor | http://purl.obolibrary.org/obo/CHEBI_17891 |
| T26 | 707-712 | Chemical | denotes | Donor | http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891 |
| T28 | 803-806 | Chemical | denotes | IDL | http://purl.obolibrary.org/obo/CHEBI_132933 |
| T29 | 841-843 | Chemical | denotes | CO | http://purl.obolibrary.org/obo/CHEBI_17245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T33 | 0-94 | Sentence | denotes | On day 9, the arterial blood gas analysis showed PaO2/FiO2 of 86, consistent with severe ARDS. |
| T34 | 95-158 | Sentence | denotes | Intravenous methylprednisolone (1 mg/kg/day daily) was started. |
| T35 | 159-276 | Sentence | denotes | On day 10, convalescent plasma was obtained from a male donor in his 20s who had recovered from COVID-19 for 21 days. |
| T36 | 277-438 | Sentence | denotes | He was diagnosed as COVID-19 presenting fever, cough and pneumonia, however, showed complete recovery and didn’t have any symptom at the time of plasma donation. |
| T37 | 439-566 | Sentence | denotes | He has met the blood donor eligibility criteria for plasma donation, including age, weight, reasonable-sized antecubital veins. |
| T38 | 567-706 | Sentence | denotes | Also, allogeneic donor screening tests, defined by enforcement rules of the Blood Management Act in Korea, were acceptable for transfusion. |
| T39 | 707-895 | Sentence | denotes | Donor apheresis was performed with Spectra Optia apheresis system (CMNC software; Spectra Optia IDL Tubing set; Terumo BCT, Lakewood, CO, USA), 500 mL of convalescent plasma was collected. |
| T40 | 896-1147 | Sentence | denotes | Anti-SARS-CoV-2 IgG antibody in plasma was measured by enzyme-linked immunosorbent assay (ELISA) (Novel Coronavirus COVID-19 IgG ELISA kit; Epitope Diagnostics, San Diego, CA, USA) and optical density (OD) ratio for IgG was 0.586 (cut-off value 0.22). |
| T41 | 1148-1239 | Sentence | denotes | The plasma was divided into two doses and administered to the patient at 12 hours interval. |
| T42 | 1240-1276 | Sentence | denotes | Each dose was given over for 1 hour. |
| T43 | 1277-1354 | Sentence | denotes | No adverse reaction occurred after the administration of convalescent plasma. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T9 | 317-322 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T10 | 324-329 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T11 | 334-343 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T72 | 14-28 | UBERON:0013755 | denotes | arterial blood |
| T73 | 107-125 | CHEBI:12071;DG_36;CHEBI:12071 | denotes | methylprednisolone |
| T74 | 183-189 | UBERON:0001969 | denotes | plasma |
| T75 | 255-263 | SP_7 | denotes | COVID-19 |
| T76 | 297-305 | SP_7 | denotes | COVID-19 |
| T77 | 324-329 | UBERON:0002048 | denotes | cough |
| T78 | 422-428 | UBERON:0001969 | denotes | plasma |
| T79 | 454-459 | UBERON:0000178 | denotes | blood |
| T80 | 491-497 | UBERON:0001969 | denotes | plasma |
| T81 | 560-565 | UBERON:0001638 | denotes | veins |
| T82 | 643-648 | UBERON:0000178 | denotes | Blood |
| T83 | 874-880 | UBERON:0001969 | denotes | plasma |
| T84 | 901-911 | SP_7 | denotes | SARS-CoV-2 |
| T85 | 912-924 | GO:0071743 | denotes | IgG antibody |
| T86 | 928-934 | UBERON:0001969 | denotes | plasma |
| T87 | 1000-1011 | NCBITaxon:11118 | denotes | Coronavirus |
| T88 | 1012-1020 | SP_7 | denotes | COVID-19 |
| T89 | 1021-1024 | GO:0071735 | denotes | IgG |
| T90 | 1036-1043 | BV_9 | denotes | Epitope |
| T91 | 1112-1115 | GO:0071735 | denotes | IgG |
| T92 | 1152-1158 | UBERON:0001969 | denotes | plasma |
| T93 | 1347-1353 | UBERON:0001969 | denotes | plasma |
| T14078 | 14-28 | UBERON:0013755 | denotes | arterial blood |
| T12001 | 107-125 | CHEBI:12071;DG_36;CHEBI:12071 | denotes | methylprednisolone |
| T69732 | 183-189 | UBERON:0001969 | denotes | plasma |
| T24933 | 255-263 | SP_7 | denotes | COVID-19 |
| T26519 | 297-305 | SP_7 | denotes | COVID-19 |
| T13155 | 324-329 | UBERON:0002048 | denotes | cough |
| T36018 | 422-428 | UBERON:0001969 | denotes | plasma |
| T98982 | 454-459 | UBERON:0000178 | denotes | blood |
| T46597 | 491-497 | UBERON:0001969 | denotes | plasma |
| T10409 | 560-565 | UBERON:0001638 | denotes | veins |
| T33070 | 643-648 | UBERON:0000178 | denotes | Blood |
| T18903 | 874-880 | UBERON:0001969 | denotes | plasma |
| T80173 | 901-911 | SP_7 | denotes | SARS-CoV-2 |
| T93751 | 912-924 | GO:0071743 | denotes | IgG antibody |
| T8558 | 928-934 | UBERON:0001969 | denotes | plasma |
| T31380 | 1000-1011 | NCBITaxon:11118 | denotes | Coronavirus |
| T2713 | 1012-1020 | SP_7 | denotes | COVID-19 |
| T11684 | 1021-1024 | GO:0071735 | denotes | IgG |
| T97911 | 1036-1043 | BV_9 | denotes | Epitope |
| T23659 | 1112-1115 | GO:0071735 | denotes | IgG |
| T34586 | 1152-1158 | UBERON:0001969 | denotes | plasma |
| T2920 | 1347-1353 | UBERON:0001969 | denotes | plasma |