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PMC:7152526 / 2636-3380 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
85 343-361 Gene denotes C-reactive protein Gene:1401
86 363-366 Gene denotes CRP Gene:1401
87 584-597 Gene denotes interleukin 6 Gene:3569
88 599-603 Gene denotes IL-6 Gene:3569
89 28-35 Species denotes patient Tax:9606
90 76-82 Chemical denotes oxygen MESH:D010100
91 54-61 Disease denotes dyspnea MESH:D004417
92 314-325 Disease denotes lymphopenia MESH:D008231
93 474-491 Disease denotes blood coagulation MESH:D001778

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 162-167 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T13 244-249 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T14 262-278 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T15 274-278 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T16 354-361 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T17 474-479 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T18 584-597 Body_part denotes interleukin 6 http://purl.org/sig/ont/fma/fma264829
T19 584-595 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 162-167 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 244-249 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T5 268-273 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T6 474-479 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 314-325 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T26 162-167 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T27 244-249 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T28 244-249 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T29 250-255 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T30 268-273 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T31 274-278 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T32 474-479 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T33 474-479 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T34 492-497 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T35 584-597 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin 6
T36 628-630 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T37 718-725 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 76-82 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T8 354-361 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 547-556 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T12 599-601 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 474-491 http://purl.obolibrary.org/obo/GO_0007596 denotes blood coagulation
T6 480-491 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-161 Sentence denotes At the time of arrival, the patient had no subjective dyspnea under 4 L/min oxygen flow via nasal cannula, but the respiratory rate was over 30 times per minute.
T24 162-235 Sentence denotes Chest radiographs demonstrated rapidly aggravated bilateral infiltration.
T25 236-342 Sentence denotes Routine blood tests found white blood cell (WBC) count at 3.53 × 103/µL, with lymphopenia of 0.4 × 103/µL.
T26 343-437 Sentence denotes C-reactive protein (CRP) and lactic dehydrogenase (LDH) elevated up to 59.7 mg/L and 814 IU/L.
T27 438-570 Sentence denotes Routine chemistry, electrolyte, and blood coagulation tests revealed no abnormalities except mildly elevated aspartate transaminase.
T28 571-634 Sentence denotes The level of interleukin 6 (IL-6) was increased as 101.3 pg/mL.
T29 635-744 Sentence denotes Serial bacterial culture and polymerase chain reaction (PCR) for other respiratory viruses were all negative.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 54-61 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T8 314-325 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T52 92-97 UBERON:0000004 denotes nasal
T53 115-126 UBERON:0001004 denotes respiratory
T54 244-249 UBERON:0000178 denotes blood
T55 262-267 CL:0000738 denotes white
T56 268-273 CL:0000738;UBERON:0000178 denotes blood
T57 274-278 CL:0000738 denotes cell
T58 343-361 PR:000005897 denotes C-reactive protein
T59 474-479 UBERON:0000178;GO:0007596 denotes blood
T60 480-491 GO:0007596 denotes coagulation
T61 584-597 PR:000001393 denotes interleukin 6
T62 599-603 PR:000001393 denotes IL-6
T63 642-651 NCBITaxon:2 denotes bacterial
T64 706-717 NCBITaxon:11886;UBERON:0001004 denotes respiratory
T65 718-725 NCBITaxon:10239 denotes viruses
T3641 92-97 UBERON:0000004 denotes nasal
T37550 115-126 UBERON:0001004 denotes respiratory
T12571 244-249 UBERON:0000178 denotes blood
T7691 262-267 CL:0000738 denotes white
T67961 268-273 CL:0000738;UBERON:0000178 denotes blood
T4078 274-278 CL:0000738 denotes cell
T33243 343-361 PR:000005897 denotes C-reactive protein
T35856 474-479 UBERON:0000178;GO:0007596 denotes blood
T49965 480-491 GO:0007596 denotes coagulation
T66699 584-597 PR:000001393 denotes interleukin 6
T70766 599-603 PR:000001393 denotes IL-6
T46580 642-651 NCBITaxon:2 denotes bacterial
T23228 706-717 NCBITaxon:11886;UBERON:0001004 denotes respiratory
T12091 718-725 NCBITaxon:10239 denotes viruses