PMC:7152526 / 14389-15197
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 345 | 15-22 | Species | denotes | patient | Tax:9606 |
| 346 | 311-319 | Species | denotes | Patients | Tax:9606 |
| 347 | 567-575 | Species | denotes | patients | Tax:9606 |
| 348 | 30-41 | Disease | denotes | lymphopenia | MESH:D008231 |
| 349 | 332-350 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
| 350 | 355-359 | Disease | denotes | ARDS | MESH:D012128 |
| 351 | 380-391 | Disease | denotes | lymphopenia | MESH:D008231 |
| 352 | 535-555 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 353 | 577-588 | Disease | denotes | lymphopenia | MESH:D008231 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T95 | 150-156 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T96 | 184-194 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
| T97 | 479-489 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
| T98 | 718-728 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
| T99 | 801-807 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T90 | 30-41 | Disease | denotes | lymphopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
| T91 | 332-340 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T92 | 341-350 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T93 | 355-359 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T94 | 380-391 | Disease | denotes | lymphopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
| T95 | 535-543 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T96 | 546-555 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T97 | 562-566 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T98 | 577-588 | Disease | denotes | lymphopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T147 | 150-156 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T148 | 409-411 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T149 | 556-558 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T150 | 801-807 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T71 | 108-122 | Chemical | denotes | corticosteroid | http://purl.obolibrary.org/obo/CHEBI_50858 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T108 | 0-127 | Sentence | denotes | In Case 2, the patient showed lymphopenia from day 1, and it persisted even after clinical improvement with corticosteroid use. |
| T109 | 128-310 | Sentence | denotes | When the convalescent plasma was administered on day 6, lymphocyte count immediately rose to normal level (from 0.52 × 103/µL to 1.21 × 103/µL) and then remained in the normal range. |
| T110 | 311-808 | Sentence | denotes | Patients with severe COVID-19 pneumonia and ARDS also presented with lymphopenia in other studies.11 Some authors hypothesized that continuous and gradual increases in lymphocyte count might be required for immunity against SARS-CoV-2 infection.11 In SARS patients, lymphopenia existed at the onset of illness and persisted until the recovery period.1819 These findings were consistent with the recovery of lymphocyte count with clinical improvement of Case 2 after the use of convalescent plasma. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T31 | 30-41 | Phenotype | denotes | lymphopenia | http://purl.obolibrary.org/obo/HP_0001888 |
| T32 | 341-350 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T33 | 380-391 | Phenotype | denotes | lymphopenia | http://purl.obolibrary.org/obo/HP_0001888 |
| T34 | 577-588 | Phenotype | denotes | lymphopenia | http://purl.obolibrary.org/obo/HP_0001888 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T236 | 108-122 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroid |
| T237 | 150-156 | UBERON:0001969 | denotes | plasma |
| T238 | 184-194 | CL:0000542 | denotes | lymphocyte |
| T239 | 332-340 | SP_7 | denotes | COVID-19 |
| T240 | 479-489 | CL:0000542 | denotes | lymphocyte |
| T241 | 535-545 | SP_7 | denotes | SARS-CoV-2 |
| T242 | 562-566 | SP_10 | denotes | SARS |
| T243 | 718-728 | CL:0000542 | denotes | lymphocyte |
| T244 | 801-807 | UBERON:0001969 | denotes | plasma |
| T27123 | 108-122 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroid |
| T82689 | 150-156 | UBERON:0001969 | denotes | plasma |
| T44282 | 184-194 | CL:0000542 | denotes | lymphocyte |
| T32395 | 332-340 | SP_7 | denotes | COVID-19 |
| T52489 | 479-489 | CL:0000542 | denotes | lymphocyte |
| T25060 | 535-545 | SP_7 | denotes | SARS-CoV-2 |
| T81679 | 562-566 | SP_10 | denotes | SARS |
| T83063 | 718-728 | CL:0000542 | denotes | lymphocyte |
| T38082 | 801-807 | UBERON:0001969 | denotes | plasma |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32281317-16043521-61647296 | 661-663 | 16043521 | denotes | 18 |
| 32281317-14767818-61647297 | 661-665 | 14767818 | denotes | 1819 |