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PMC:7148714 / 9882-14778 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
147 1185-1193 Disease denotes COVID-19 MESH:C000657245
149 774-782 Disease denotes infected MESH:D007239
151 2942-2948 Species denotes people Tax:9606
153 3460-3468 Disease denotes infected MESH:D007239
155 3517-3525 Disease denotes COVID-19 MESH:C000657245
158 3779-3784 Species denotes human Tax:9606
159 3767-3775 Disease denotes COVID-19 MESH:C000657245
162 4358-4366 Disease denotes infected MESH:D007239
163 4372-4380 Disease denotes COVID-19 MESH:C000657245
169 4470-4475 Species denotes human Tax:9606
170 4487-4495 Disease denotes COVID-19 MESH:C000657245
171 4563-4571 Disease denotes infected MESH:D007239
172 4577-4585 Disease denotes COVID-19 MESH:C000657245
173 4750-4758 Disease denotes COVID-19 MESH:C000657245
179 77-82 Species denotes human Tax:9606
180 367-372 Species denotes human Tax:9606
181 191-196 Disease denotes death MESH:D003643
182 575-579 Disease denotes died MESH:D003643
183 585-593 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 1-5 Body_part denotes Body http://purl.org/sig/ont/fma/fma256135
T9 406-410 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T10 427-431 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T11 486-490 Body_part denotes Body http://purl.org/sig/ont/fma/fma256135
T12 734-738 Body_part denotes skin http://purl.org/sig/ont/fma/fma7163
T13 792-796 Body_part denotes Face http://purl.org/sig/ont/fma/fma24728
T14 807-810 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T15 834-838 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T16 852-856 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T17 997-1001 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T18 1034-1038 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T19 1040-1044 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T20 1046-1050 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T21 1056-1061 Body_part denotes mouth http://purl.org/sig/ont/fma/fma49184
T22 1800-1804 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T23 1852-1855 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T24 2625-2629 Body_part denotes skin http://purl.org/sig/ont/fma/fma7163
T25 2707-2711 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T26 2720-2724 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T27 3063-3067 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T28 3072-3077 Body_part denotes mouth http://purl.org/sig/ont/fma/fma49184
T29 3143-3147 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T30 3188-3192 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T31 3284-3288 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T32 3338-3342 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T33 3469-3473 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T34 3599-3603 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T35 4787-4791 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 734-738 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014
T7 792-796 Body_part denotes Face http://purl.obolibrary.org/obo/UBERON_0001456
T8 807-810 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T9 834-838 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T10 852-856 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T11 1034-1038 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T12 1046-1050 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T13 1056-1061 Body_part denotes mouth http://purl.obolibrary.org/obo/UBERON_0000165
T14 1800-1804 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T15 1852-1855 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T16 2625-2629 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014
T17 3063-3067 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T18 3072-3077 Body_part denotes mouth http://purl.obolibrary.org/obo/UBERON_0000165
T19 3176-3181 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T20 3392-3397 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 585-593 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T43 1185-1193 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 1326-1329 Disease denotes PHA http://purl.obolibrary.org/obo/MONDO_0007710|http://purl.obolibrary.org/obo/MONDO_0008214
T46 2584-2590 Disease denotes wounds http://purl.obolibrary.org/obo/MONDO_0021178
T47 2734-2744 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T48 3517-3525 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 3767-3775 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 4372-4380 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 4487-4495 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T52 4577-4585 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 4750-4758 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T51 77-82 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T52 367-372 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T53 734-738 http://purl.obolibrary.org/obo/UBERON_0000014 denotes skin
T54 734-738 http://purl.obolibrary.org/obo/UBERON_0001003 denotes skin
T55 734-738 http://purl.obolibrary.org/obo/UBERON_0002097 denotes skin
T56 734-738 http://purl.obolibrary.org/obo/UBERON_0002199 denotes skin
T57 734-738 http://www.ebi.ac.uk/efo/EFO_0000962 denotes skin
T58 792-796 http://purl.obolibrary.org/obo/UBERON_0001456 denotes Face
T59 807-810 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T60 834-838 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T61 852-856 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T62 1034-1038 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T63 1040-1044 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T64 1046-1050 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T65 1056-1061 http://www.ebi.ac.uk/efo/EFO_0000825 denotes mouth
T66 1800-1804 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T67 1852-1855 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T68 2363-2364 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 2559-2560 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 2625-2629 http://purl.obolibrary.org/obo/UBERON_0000014 denotes skin
T71 2625-2629 http://purl.obolibrary.org/obo/UBERON_0001003 denotes skin
T72 2625-2629 http://purl.obolibrary.org/obo/UBERON_0002097 denotes skin
T73 2625-2629 http://purl.obolibrary.org/obo/UBERON_0002199 denotes skin
T74 2625-2629 http://www.ebi.ac.uk/efo/EFO_0000962 denotes skin
T75 3063-3067 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T76 3072-3077 http://www.ebi.ac.uk/efo/EFO_0000825 denotes mouth
T77 3264-3272 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T78 3779-3784 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T79 3811-3812 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 4012-4013 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 4470-4475 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 662-669 Chemical denotes nitrile http://purl.obolibrary.org/obo/CHEBI_18379
T6 1326-1329 Chemical denotes PHA http://purl.obolibrary.org/obo/CHEBI_78037
T7 2663-2670 Chemical denotes nitrile http://purl.obolibrary.org/obo/CHEBI_18379

TEST0

Id Subject Object Predicate Lexical cue
32412013-186-191-83594 3935-3936 ["32035997", "32035997"] denotes 6

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 2966-2972 http://purl.obolibrary.org/obo/GO_0007631 denotes eating
T4 3106-3112 http://purl.obolibrary.org/obo/GO_0007631 denotes eating
T5 3215-3221 http://purl.obolibrary.org/obo/GO_0007631 denotes eating
T6 4296-4305 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T7 4320-4327 http://purl.obolibrary.org/obo/GO_0051235 denotes storage
T8 4773-4782 http://purl.obolibrary.org/obo/GO_0006810 denotes Transport

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T52 0-91 Sentence denotes "Body handler" refers to any individual involved in the physical handling of human remains.
T53 92-485 Sentence denotes This includes, but is not limited to, healthcare practitioners and healthcare assistant personnel, death care workers including forensic doctors, pathologists and other forensic experts, autopsy technicians, non-forensic personnel charged with recovery and transportation of human remains, individuals involved in body preparation for body disposal, for funerals or other commemorative events.
T54 486-822 Sentence denotes Body handlers should take precautions when handling the remains of individuals that have died from COVID-19.• Use of standard PPE – Gloves (Ensure that gloves are unpunctured, nitrile gloves preferred)/aprons/long sleeved gowns/overalls to protect skin and clothing from contamination by infected material/Face masks and eye protection:
T55 823-1073 Sentence denotes Googles or face shields/Full-face masks: FFP3 masks or N95 respirators are currently considered best for preventing inhalation of aerosols and in case of splashes during the body handling process to protect the face, eyes, nose, and mouth (Table 1 ).
T56 1074-1120 Sentence denotes Table 1 Transmission based precautions (TBPs):
T57 1121-1203 Sentence denotes Personal protective equipment (PPE) for care of deceased during COVID-19 pandemic.
T58 1204-1406 Sentence denotes Table adapted from guidance developed by Department of Health and Social Care, Public Health Wales, Public Health Agency (PHA) Northern Ireland, Health Protection Scotland and Public Health England [7].
T59 1407-1638 Sentence denotes Low risk Procedures∗:Admission of deceasedPreparation for viewingRelease of deceased Medium risk Procedures∗∗:Rolling deceasedUndressing deceasedSignificant manual handling High risk Procedures:Autopsy and other invasive procedures
T60 1639-1668 Sentence denotes Disposable gloves Yes Yes Yes
T61 1669-1705 Sentence denotes Disposable plastic apron Yes Yes Yes
T62 1706-1731 Sentence denotes Disposable gown No No Yes
T63 1732-1789 Sentence denotes Fluid-resistant (Type IIR) surgical mask (FRSM) Yes No No
T64 1790-1840 Sentence denotes Filtering face piece (FFP)∗∗∗ No FFP2 or FFP3 FFP3
T65 1841-1878 Sentence denotes Disposable eye protection Yes Yes Yes
T66 1879-1965 Sentence denotes Protective footwear (e.g. rubber boots which can be disinfected after use) Yes Yes Yes
T67 1966-2039 Sentence denotes ∗If procedure likely to cause droplet contact, use medium risk procedure.
T68 2040-2253 Sentence denotes ∗∗If procedure likely to generate aerosols, use high risk procedure. ∗∗∗ECDC (European Centre for Disease Prevention and Control) recommends the use of FFP3 masks for performing aerosol-generating procedures [15].
T69 2254-2441 Sentence denotes In case of shortage of Class 3 respirators, the use of Class 2 respirators (e.g. FFP2) may be considered, on a case by case basis and after assessing the risks of the procedures required.
T70 2442-2544 Sentence denotes • Shoe protection is desirable, ideally consisting of rubber boots which can be disinfected after use.
T71 2545-2678 Sentence denotes • If there is a risk of cuts, puncture wounds, or other injuries that break the skin, wear heavy-duty gloves over the nitrile gloves.
T72 2679-2764 Sentence denotes • Where possible use double body bags or body bags for infectious cases if available.
T73 2765-2877 Sentence denotes • Disinfect any non-disposable equipment being used during the handling of the remains as per standard practice.
T74 2878-2995 Sentence denotes • Used PPE should be properly disposed of to avoid contact with people, food, drink, or eating and drinking utensils.
T75 2996-3036 Sentence denotes Biohazardous waste incineration is best.
T76 3037-3157 Sentence denotes • Avoid contact with your face and mouth, as well as food, drink, or eating and drinking utensils, during body handling.
T77 3158-3234 Sentence denotes • Rigorously wash hands after body handling and prior to eating or drinking.
T78 3235-3321 Sentence denotes • Do not engage in any other activity during the body handling or preparation process.
T79 3322-3474 Sentence denotes • Following the body handling or preparation process, rigorously wash hands and disinfect surfaces that may have come in contact with the infected body.
T80 3475-3604 Sentence denotes • Be aware of any hazards, in addition to COVID-19, which may be present in the environment and site of the location of the body.
T81 3605-3746 Sentence denotes • Ensure that any potentially contaminated staff clothing is not taken to their place of residence or those of others before proper cleaning.
T82 3747-3939 Sentence denotes • The potential for COVID-19 in human remains continues to pose a cross contamination hazard for some time after they have been removed from the site of recovery (hours and possibly days [6]).
T83 3940-4041 Sentence denotes • Similarly, personal effects of the deceased may also continue to pose a cross contamination hazard.
T84 4042-4239 Sentence denotes If they are to be returned to next of kin, careful consideration must be given to an appropriate means of decontamination to ensure that the health of those receiving these items is not endangered.
T85 4240-4419 Sentence denotes • Similarly, documentation created during the recovery, transport, examination, storage and burial process may become infected with COVID-19 and should be disinfected accordingly.
T86 4420-4586 Sentence denotes • The process of recovering and identification of human remains of COVID-19 fatalities will generate waste products which are also potentially infected with COVID-19.
T87 4587-4770 Sentence denotes Careful consideration must be given to safe management and disposal of this waste to ensure that the safety of those involved is not compromised and the spread of COVID-19 is avoided.
T88 4771-4896 Sentence denotes • Transport the body to the mortuary (or disinfection location if no post-mortem examination will occur) as soon as possible.

0_colil

Id Subject Object Predicate Lexical cue
32412013-32035997-83594 3935-3936 32035997 denotes 6

2_test

Id Subject Object Predicate Lexical cue
32412013-32035997-30856343 3935-3936 32035997 denotes 6

MyTest

Id Subject Object Predicate Lexical cue
32412013-32035997-30856343 3935-3936 32035997 denotes 6