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PMC:7148425 / 7095-8565 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
87 407-410 Gene denotes CD4 Gene:920
88 89-97 Species denotes SARS-CoV Tax:694009
89 265-271 Species denotes humans Tax:9606
90 734-738 Species denotes H7N1 Tax:119216
91 926-936 Species denotes SARS-CoV-2 Tax:2697049
92 1136-1146 Species denotes SARS-CoV-2 Tax:2697049
93 122-131 Disease denotes infection MESH:D007239
94 291-296 Disease denotes Fever MESH:D005334
95 997-1017 Disease denotes SARS-CoV-1 infection MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
32300370-26459351-46535325 490-491 26459351 denotes 7
32300370-24642138-46535326 1043-1044 24642138 denotes 8
T83295 490-491 26459351 denotes 7
T89624 1043-1044 24642138 denotes 8

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T104 89-97 SP_10 denotes SARS-CoV
T105 216-222 UBERON:0002405 denotes immune
T106 253-261 CHEBI:59132;CHEBI:59132 denotes antigens
T107 265-271 NCBITaxon:9606 denotes humans
T108 349-356 CHEBI:59132;CHEBI:59132 denotes antigen
T109 390-397 CHEBI:59132;CHEBI:59132 denotes antigen
T110 407-410 PR:000001004 denotes CD4
T111 451-459 GO:0042571;GO:0016064 denotes antibody
T112 460-469 GO:0016064 denotes responses
T113 728-733 NCBITaxon:8782 denotes avian
T114 849-854 NCBITaxon:10239 denotes virus
T115 905-911 UBERON:0007023 denotes adults
T116 926-936 SP_7 denotes SARS-CoV-2
T117 938-945 NCBITaxon:9443 denotes Primate
T118 986-993 NCBITaxon:9527 denotes monkeys
T119 997-1005 SP_10 denotes SARS-CoV
T120 1116-1123 CHEBI:59132;CHEBI:59132 denotes antigen
T121 1124-1132 BV_9 denotes epitopes
T122 1136-1146 SP_7 denotes SARS-CoV-2
T123 1156-1164 GO:0042571 denotes antibody
T124 1165-1171 CL:0000236 denotes B cell
T125 1186-1192 CL:0000084 denotes T cell
T126 1310-1324 BV_26 denotes vaccine design
T127 1339-1344 UBERON:0007023 denotes adult
T128 1377-1378 CL:0000084;GO:0042110 denotes T
T129 1383-1389 CL:0000236 denotes B cell
T130 1430-1436 UBERON:0002405 denotes immune
T75384 89-97 SP_10 denotes SARS-CoV
T50695 216-222 UBERON:0002405 denotes immune
T94168 253-261 CHEBI:59132;CHEBI:59132 denotes antigens
T28705 265-271 NCBITaxon:9606 denotes humans
T64389 349-356 CHEBI:59132;CHEBI:59132 denotes antigen
T38276 390-397 CHEBI:59132;CHEBI:59132 denotes antigen
T7547 407-410 PR:000001004 denotes CD4
T95385 451-459 GO:0042571;GO:0016064 denotes antibody
T9300 460-469 GO:0016064 denotes responses
T3690 728-733 NCBITaxon:8782 denotes avian
T99926 849-854 NCBITaxon:10239 denotes virus
T69227 905-911 UBERON:0007023 denotes adults
T14255 926-936 SP_7 denotes SARS-CoV-2
T82466 938-945 NCBITaxon:9443 denotes Primate
T65870 986-993 NCBITaxon:9527 denotes monkeys
T94402 997-1005 SP_10 denotes SARS-CoV
T30255 1116-1123 CHEBI:59132;CHEBI:59132 denotes antigen
T66613 1124-1132 BV_9 denotes epitopes
T56090 1136-1146 SP_7 denotes SARS-CoV-2
T36704 1156-1164 GO:0042571 denotes antibody
T7050 1165-1171 CL:0000236 denotes B cell
T65037 1186-1192 CL:0000084 denotes T cell
T67706 1310-1324 BV_26 denotes vaccine design
T19395 1339-1344 UBERON:0007023 denotes adult
T25144 1377-1378 CL:0000084;GO:0042110 denotes T
T99685 1383-1389 CL:0000236 denotes B cell
T30945 1430-1436 UBERON:0002405 denotes immune

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T39 349-373 Body_part denotes antigen-presenting cells http://purl.org/sig/ont/fma/fma273565
T40 368-373 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T41 422-427 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T42 451-459 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T43 1156-1164 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T44 1167-1171 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T45 1188-1192 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T46 1385-1389 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T24 89-97 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 122-131 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 284-296 Disease denotes Yellow Fever http://purl.obolibrary.org/obo/MONDO_0020502
T27 564-573 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T28 674-683 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T29 926-934 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 997-1005 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 1008-1017 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 1136-1144 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T57 63-64 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 265-271 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T59 273-274 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T60 368-373 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T61 378-379 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 407-410 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T63 422-427 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T64 630-633 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T65 849-854 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T66 938-945 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes Primate
T67 986-993 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkeys
T68 1047-1048 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T69 1165-1171 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T70 1186-1192 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T71 1352-1355 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T72 1369-1370 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 1383-1389 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 253-261 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T8 349-356 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T9 390-397 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T10 412-414 Chemical denotes Th http://purl.obolibrary.org/obo/CHEBI_33385
T11 1116-1123 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T41 0-43 Sentence denotes There are few precedents to assist us here.
T42 44-148 Sentence denotes Efforts to develop a prophylactic vaccine or SARS-CoV-1 were shelved when the infection faded by itself.
T43 149-272 Sentence denotes There are surprisingly few data available concerning the status of immune responsiveness to truly novel antigens in humans.
T44 273-493 Sentence denotes A study on Yellow Fever vaccination of the elderly pointed to dysfunctional antigen-presenting cells and a dearth of antigen-specific CD4+ Th helper cells as culprits in the low antibody responses of older vaccinees [7].
T45 494-586 Sentence denotes Otherwise, we have to rely mostly on the large literature on seasonal influenza vaccination.
T46 587-762 Sentence denotes However, the problem here is that everyone has already been exposed to some strains of influenza and even newly-emerging strains such as the avian H7N1 are not entirely novel.
T47 763-937 Sentence denotes Nonetheless, knowledge garnered on immunity and responses to vaccination against this virus may tell us something about the capacity of older adults to respond to SARS-CoV-2.
T48 938-1046 Sentence denotes Primate models featuring the responses of older monkeys to SARS-CoV-1 infection may also be informative [8].
T49 1047-1296 Sentence denotes A systems biology approach will be needed to identify the protective antigen/epitopes of SARS-CoV-2 for both antibody/B cell responses and T cell responses and to classify them as protective or non-protective responses to serve as useful biomarkers.
T50 1297-1470 Sentence denotes Importantly, vaccine design for the older adult should aim to stimulate a broad T and B cell response potentially overcoming reduced immune function in the older population.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 291-296 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945