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PMC:7146662 / 2342-5628 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
46 398-405 Species denotes patient Tax:9606
47 492-499 Species denotes patient Tax:9606
49 1623-1632 Disease denotes tightness MESH:C536920
52 674-681 Species denotes patient Tax:9606
53 1196-1205 Disease denotes tightness MESH:C536920
55 2618-2626 Chemical denotes moisture
57 3050-3058 Species denotes patients Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 603-610 Body_part denotes thyroid http://purl.org/sig/ont/fma/fma9603
T2 690-695 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 763-770 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T4 860-870 Body_part denotes upper body http://purl.org/sig/ont/fma/fma0327934
T5 1332-1339 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T6 1404-1414 Body_part denotes upper body http://purl.org/sig/ont/fma/fma0327934

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 603-610 Body_part denotes thyroid http://purl.obolibrary.org/obo/UBERON_0002046
T3 690-695 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 763-770 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T5 1332-1339 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T6 2748-2753 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T7 3097-3102 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T16 217-224 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T17 297-302 Disease denotes PAPRs http://purl.obolibrary.org/obo/MONDO_0007352
T18 330-337 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T19 580-587 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T20 2024-2027 Disease denotes HME http://purl.obolibrary.org/obo/MONDO_0000225
T21 2377-2380 Disease denotes HME http://purl.obolibrary.org/obo/MONDO_0000225
T22 3124-3131 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T16 215-216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 245-246 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 601-602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 624-625 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 635-645 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrument
T21 690-695 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T22 763-770 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T23 763-770 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T24 808-812 http://www.ebi.ac.uk/efo/EFO_0001410 denotes arms
T25 827-828 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 912-913 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 974-978 http://www.ebi.ac.uk/efo/EFO_0001410 denotes arms
T28 988-989 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1020-1025 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T30 1104-1109 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T31 1332-1339 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T32 1332-1339 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T33 1356-1360 http://www.ebi.ac.uk/efo/EFO_0001410 denotes arms
T34 1371-1372 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 1485-1489 http://www.ebi.ac.uk/efo/EFO_0001410 denotes arms
T36 1498-1499 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 1530-1535 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T38 1712-1713 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 1796-1797 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 1912-1913 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 1975-1981 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tubing
T42 2275-2278 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T43 2485-2491 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tubing
T44 2813-2824 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T45 2895-2901 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T46 2913-2914 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T47 3197-3208 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T48 3279-3285 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 2014-2022 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange
T3 2521-2529 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange
T4 2627-2635 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-19 Sentence denotes Protocol and set-up
T16 20-345 Sentence denotes At our institution, an anteroom is used, directly abutting our negative pressure operating room, for donning and doffing of personal protective equipment (PPE), including protective boot covers, a sterile gown, under gloves, a surgical mask, powered air-purifying respirators (PAPRs), and an overlying pair of sterile gloves.
T17 346-459 Sentence denotes On transfer to the operating room from the ICU, the patient is accompanied by an anesthesia provider in full PPE.
T18 460-617 Sentence denotes Once in the operating room, the patient is placed in the supine position on the operating table and draped in the usual sterile fashion with a thyroid drape.
T19 618-696 Sentence denotes Next, a magnetic instrument mat is placed overlying the patient’s upper chest.
T20 697-793 Sentence denotes An Omni-Tract retractor is mounted to the bed at the level of mid-abdomen, opposite the surgeon.
T21 794-871 Sentence denotes The retractor arms are placed in a wide-V configuration, over the upper body.
T22 872-1110 Sentence denotes The Ecolab Scope Pillow Warmer Drape is a clear plastic material that is stretched over the retractor arms, forming a barrier between the operative field and the surgeon, while still allowing for good visualization of the operative field.
T23 1111-1259 Sentence denotes The drape is then secured with snaps to the self-retaining retractor to maintain the tightness of the drape; this will improve visibility (Fig. 1 ).
T24 1260-1415 Sentence denotes Figure 1 An Omni-Tract retractor mounted to the bed at the level of mid-abdomen, with retractor arms placed in a wide-V configuration, over the upper body.
T25 1416-1646 Sentence denotes The Ecolab Scope Pillow Warmer Drape is stretched over the retractor arms forming a barrier between the operative field and the surgeon and secured with snaps to the self-retaining retractor to maintain the tightness of the drape.
T26 1647-1779 Sentence denotes Additional self-retraining retractors that would suffice include a Bookwalter or Thompson retractor set; both can be used (Fig. 2 ).
T27 1780-1840 Sentence denotes This is used as a protective shield for droplet precautions.
T28 1841-1930 Sentence denotes Figure 2 Thompson retractor in place of Omni-Tract retractor set up in a similar fashion.
T29 1931-2115 Sentence denotes Finally, the Buffalo Filter smoke evacuator tubing is connected to 2 heat moisture exchange (HME) filters and placed under the drape to provide further air filtration (Figs. 3 and 4 ).
T30 2116-2216 Sentence denotes The reason for the multifilter system is to attempt maximum efficiency in filtering viral particles.
T31 2217-2444 Sentence denotes According to the respective manufacturers, Buffalo Filter has 4 stages of filtration that reportedly ensure 99.999% efficiency, down to 0.1 to 0.2 microns, and HME filters provide bacterial and viral filtration exceeding 99.9%.
T32 2445-2599 Sentence denotes Figure 3 Buffalo Filter smoke evacuator tubing connected to 2 heat moisture exchange filters and placed under the drape to provide further air filtration.
T33 2600-2702 Sentence denotes Figure 4 Two heat moisture exchange filters connected in series to the Buffalo Filter smoke evacuator.
T34 2703-2912 Sentence denotes The operator and assistant will proceed with hands underneath the drape, allowing both the technician to pass instruments under the additional protection and the anesthesia team to access the airway (Fig. 5 ).
T35 2913-3059 Sentence denotes A practice run was conducted to ensure smooth operation of the protocol, including the donning and doffing procedure and transferring of patients.
T36 3060-3138 Sentence denotes Figure 5 Operator and assistant with hands underneath the clear sterile drape.
T37 3139-3286 Sentence denotes The open access set-up allows both the technician to pass instruments under the additional protection and the anesthesia team to access the airway.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T21 603-610 UBERON:0002046 denotes thyroid
T22 690-695 UBERON:0001443 denotes chest
T23 763-770 UBERON:0000916 denotes abdomen
T24 1020-1025 UBERON:0007688 denotes field
T25 1104-1109 UBERON:0007688 denotes field
T26 1332-1339 UBERON:0000916 denotes abdomen
T27 1530-1535 UBERON:0007688 denotes field
T30 2200-2205 NCBITaxon:10239 denotes viral
T31 2397-2406 NCBITaxon:2 denotes bacterial
T32 2411-2416 NCBITaxon:10239 denotes viral
T33 2748-2753 UBERON:0002398 denotes hands
T34 2895-2901 UBERON:0001005 denotes airway
T35 3279-3285 UBERON:0001005 denotes airway
T72534 603-610 UBERON:0002046 denotes thyroid
T16047 690-695 UBERON:0001443 denotes chest
T50932 763-770 UBERON:0000916 denotes abdomen
T233 1020-1025 UBERON:0007688 denotes field
T71070 1104-1109 UBERON:0007688 denotes field
T78611 1332-1339 UBERON:0000916 denotes abdomen
T96902 1530-1535 UBERON:0007688 denotes field
T28 1334-1341 UBERON:0000916 denotes domen,
T29 1532-1537 UBERON:0007688 denotes eld a
T74133 2200-2205 NCBITaxon:10239 denotes viral
T5661 2397-2406 NCBITaxon:2 denotes bacterial
T31756 2411-2416 NCBITaxon:10239 denotes viral
T79212 2748-2753 UBERON:0002398 denotes hands
T6021 2895-2901 UBERON:0001005 denotes airway
T33653 3279-3285 UBERON:0001005 denotes airway
T36 3097-3102 UBERON:0002398 denotes hands
T37 3279-3285 UBERON:0001005 denotes airway