> top > docs > PMC:7144508 > spans > 567-8795 > annotations

PMC:7144508 / 567-8795 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
22 70-87 Species denotes novel coronavirus Tax:2697049
23 89-98 Species denotes 2019-nCoV Tax:2697049
24 22-31 Disease denotes pneumonia MESH:D011014
25 39-47 Disease denotes COVID-19 MESH:C000657245
26 293-298 Disease denotes death MESH:D003643
27 384-392 Disease denotes COVID-19 MESH:C000657245
28 846-851 Disease denotes death MESH:D003643
29 869-888 Disease denotes infectious diseases MESH:D003141
31 972-977 Disease denotes death MESH:D003643
40 1225-1232 Species denotes persons Tax:9606
41 1423-1432 Species denotes 2019-nCoV Tax:2697049
42 1007-1012 Disease denotes death MESH:D003643
43 1216-1224 Disease denotes infected MESH:D007239
44 1329-1334 Disease denotes death MESH:D003643
45 1380-1388 Disease denotes infected MESH:D007239
46 1465-1473 Disease denotes infected MESH:D007239
47 1557-1562 Disease denotes death MESH:D003643
55 1622-1631 Species denotes 2019-nCoV Tax:2697049
56 1727-1736 Species denotes 2019-nCoV Tax:2697049
57 1833-1841 Species denotes patients Tax:9606
58 1792-1800 Disease denotes infected MESH:D007239
59 1812-1816 Disease denotes died MESH:D003643
60 1851-1855 Disease denotes died MESH:D003643
61 1859-1867 Disease denotes COVID-19 MESH:C000657245
64 2024-2033 Species denotes 2019-nCoV Tax:2697049
65 2435-2452 Disease denotes instrument injury MESH:D005547
67 2785-2793 Chemical denotes formalin MESH:D005557
73 3479-3486 Species denotes persons Tax:9606
74 3126-3131 Disease denotes death MESH:D003643
75 3223-3228 Disease denotes death MESH:D003643
76 3251-3259 Disease denotes COVID-19 MESH:C000657245
77 3470-3478 Disease denotes infected MESH:D007239
82 3628-3633 Disease denotes death MESH:D003643
83 3714-3722 Disease denotes infected MESH:D007239
84 3785-3790 Disease denotes death MESH:D003643
85 3812-3820 Disease denotes infected MESH:D007239
87 3928-3933 Disease denotes death MESH:D003643
89 5779-5784 Disease denotes death MESH:D003643
93 6082-6100 Disease denotes infectious disease MESH:D003141
94 6127-6132 Disease denotes death MESH:D003643
95 6151-6169 Disease denotes infectious disease MESH:D003141
99 6800-6805 Chemical denotes water MESH:D014867
100 6447-6455 Disease denotes infected MESH:D007239
101 6659-6678 Disease denotes infectious diseases MESH:D003141
107 7119-7127 Disease denotes COVID-19 MESH:C000657245
108 7300-7319 Disease denotes infectious diseases MESH:D003141
109 7413-7418 Disease denotes death MESH:D003643
110 7487-7495 Disease denotes infected MESH:D007239
111 7607-7615 Disease denotes infected MESH:D007239
113 7778-7783 Disease denotes death MESH:D003643

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1971-1975 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T2 2177-2183 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T3 2184-2203 Body_part denotes segmentation, organ http://purl.org/sig/ont/fma/fma86140
T4 2198-2203 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T5 2216-2221 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T6 2222-2230 Body_part denotes incision http://purl.org/sig/ont/fma/fma264784
T7 2409-2413 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T8 2457-2467 Body_part denotes body fluid http://purl.org/sig/ont/fma/fma280556
T9 3156-3160 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T10 4047-4051 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T11 5552-5557 Body_part denotes joint http://purl.org/sig/ont/fma/fma7490
T12 5577-5582 Body_part denotes joint http://purl.org/sig/ont/fma/fma7490
T13 7513-7517 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 2177-2183 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T2 2198-2203 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T3 2216-2221 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T4 2645-2651 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T5 4047-4051 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 22-31 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 39-47 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 384-392 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 869-879 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T10 1859-1867 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 2446-2452 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T12 3251-3259 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 6082-6100 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T14 6151-6169 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T15 6659-6669 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T16 7119-7127 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 7300-7310 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T18 7824-7834 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 16-17 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T4 68-69 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 101-104 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 346-358 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T7 426-427 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 446-451 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 715-721 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4], [5
T10 910-916 http://purl.obolibrary.org/obo/UBERON_0001456 denotes facing
T11 1163-1164 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1345-1350 http://purl.obolibrary.org/obo/UBERON_0001456 denotes faced
T13 1555-1556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1632-1635 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 1752-1753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1765-1766 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1808-1811 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 1877-1878 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1899-1904 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T20 1958-1963 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 2198-2203 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T22 2216-2221 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T23 2270-2275 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 2340-2345 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T25 2435-2445 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrument
T26 2457-2467 http://purl.obolibrary.org/obo/UBERON_0006314 denotes body fluid
T27 2645-2651 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T28 2937-2938 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 2955-2956 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3229-3232 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T31 3233-3234 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 3783-3784 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 4047-4051 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T34 4231-4233 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T35 4276-4277 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 4331-4332 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 4473-4474 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T38 4634-4642 http://purl.obolibrary.org/obo/OBI_0000245 denotes organize
T39 4634-4642 http://purl.obolibrary.org/obo/OBI_0100026 denotes organize
T40 4634-4642 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organize
T41 4651-4662 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T42 5025-5026 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 5146-5147 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 5249-5251 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T45 5533-5534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 5552-5557 http://purl.obolibrary.org/obo/UBERON_0000982 denotes joint
T47 5552-5557 http://purl.obolibrary.org/obo/UBERON_0004905 denotes joint
T48 5577-5582 http://purl.obolibrary.org/obo/UBERON_0000982 denotes joint
T49 5577-5582 http://purl.obolibrary.org/obo/UBERON_0004905 denotes joint
T50 6573-6575 http://purl.obolibrary.org/obo/CLO_0008285 denotes P1
T51 6576-6578 http://purl.obolibrary.org/obo/CLO_0008337 denotes P4
T52 6939-6940 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 7149-7153 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T54 7263-7264 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 7393-7394 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 7553-7554 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 8010-8013 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T58 8144-8147 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 4364-4370 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T2 4429-4435 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T3 4488-4494 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T4 6573-6575 Chemical denotes P1 http://purl.obolibrary.org/obo/CHEBI_60949
T5 6576-6578 Chemical denotes P4 http://purl.obolibrary.org/obo/CHEBI_35895
T6 6800-6805 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T7 7136-7148 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T8 7144-7148 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 22-31 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2100-2110 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T2 2184-2196 http://purl.obolibrary.org/obo/GO_0035282 denotes segmentation
T3 2594-2601 http://purl.obolibrary.org/obo/GO_0051235 denotes storage
T4 2774-2781 http://purl.obolibrary.org/obo/GO_0051235 denotes storage

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T6 0-15 Sentence denotes 1 Introduction
T7 16-133 Sentence denotes A new pneumonia called COVID-19, which is caused by a novel coronavirus (2019-nCoV), has broken out around the world.
T8 134-328 Sentence denotes Due to the characteristics of strong infectivity, long incubation period, over 693,224 cases have been confirmed in the whole world and led to at least 33,106 death by the end of March 2020 [1].
T9 329-487 Sentence denotes The World Health Organization (WHO) announced that the COVID-19 outbreak can be characterized as a “pandemic” as the virus spreads increasingly worldwide [2].
T10 488-585 Sentence denotes The Chinese government reacted quickly and took effective measures to deal with the pandemic [3].
T11 586-724 Sentence denotes During the past three months, this highly contagious pandemic also created some challenges for forensic practitioners in China [[4], [5]].
T12 725-889 Sentence denotes It is important for forensic practitioners to increase protection awareness and accumulate experience in the medicolegal death investigation of infectious diseases.
T13 891-942 Sentence denotes 2 Potential risks facing by forensic practitioners
T14 944-998 Sentence denotes 2.1 Potential risks during death scene investigations
T15 999-1245 Sentence denotes Because death scenes normally require processing as soon as possible, forensic practitioners may not know the victim's accurate health condition, travel history in a pandemic area or the contact history with possibly infected persons immediately.
T16 1246-1389 Sentence denotes These uncertainties mean that the forensic practitioners and police working at the death scene are faced with severe risks of getting infected.
T17 1390-1493 Sentence denotes The asymptomatic transmission of 2019-nCoV means that anyindividual can be infected but not show signs.
T18 1494-1584 Sentence denotes The use of personal protective equipment by all personnel at a death scene is recommended.
T19 1586-1621 Sentence denotes 2.2 Potential risks during autopsy
T20 1622-1704 Sentence denotes 2019-nCoV has strong survivability and resistance to cold environments [[6], [7]].
T21 1705-1817 Sentence denotes It indicates that the 2019-nCoV can survive in a corpse for a period of time after the infected person has died.
T22 1818-1905 Sentence denotes The remains of patients who have died of COVID-19 may have a large amount of the virus.
T23 1906-1980 Sentence denotes Cryopreservation may prolong the persistence of the virus in the body [8].
T24 1981-2118 Sentence denotes Currently, known routes of transmission of 2019-nCoV are mainly respiratory droplets, aerosols, and contact with viral secretions [9,10].
T25 2119-2414 Sentence denotes During an autopsy, forensic practitioners need to perform tissue segmentation, organ extraction, organ incision and other procedures, during which the virus can be passively released and increase the risk of inhaling the virus due to the timeframe of the autopsy and close proximity to the body.
T26 2415-2529 Sentence denotes Additionally, sharp instrument injury and body fluid spray contact can increase the risk of occupational exposure.
T27 2531-2601 Sentence denotes 2.3 Potential risks during pathological samples’ transfer and storage
T28 2602-2716 Sentence denotes Forensic pathology examination of specific organs requires sample extraction, fixation, and section after autopsy.
T29 2717-2891 Sentence denotes Samples need to transfer to the pathology laboratory and storage in formalin for more than one week; any aerosols have the potential to effuse in air and endanger physicians.
T30 2892-2988 Sentence denotes Subsequent operations should be performed in a laboratory with a heightened level of protection.
T31 2990-3036 Sentence denotes 3 Measures we have taken in forensic practice
T32 3038-3091 Sentence denotes 3.1 Thorough investigation of the history of victims
T33 3092-3344 Sentence denotes Thorough investigation before any death scene investigation and body examination is very helpful to determine whether the cause of death has a connection with COVID-19 or not, in order to take proper protections including personal protective equipment.
T34 3345-3593 Sentence denotes Relevant information such as medical history, travel history in an outbreak area or the contact history with any potentially infected persons and medical records should be obtained from the hospital, family members, witnesses, and morgue personnel.
T35 3594-3760 Sentence denotes During the outbreak response, all death investigations should follow the strictest protective measures for dealing with infected cases at the scene and in the morgue.
T36 3761-3893 Sentence denotes If we are involved in a death scene with confirmed infected cases, it is better for us to be isolated and under medical observation.
T37 3895-3951 Sentence denotes 3.2 Protection measures for the death scene and autopsy
T38 3952-4242 Sentence denotes Forensic practitioners should wear one-piece protective clothing, N95 mask, protective goggles face shield, protective shoe covers, and at least two layers of medical latex gloves; they should also be aware of the proper order of putting on and taking off protective equipment [[11], [12]].
T39 4243-4397 Sentence denotes Autopsies should be performed in a special autopsy laboratory in strict accordance with a process of three areas and two buffer zones, which consist of:1.
T40 4398-4409 Sentence denotes Clean area,
T41 4410-4412 Sentence denotes 2.
T42 4413-4441 Sentence denotes One first-level buffer zone,
T43 4442-4444 Sentence denotes 3.
T44 4445-4469 Sentence denotes Semi-contaminated areas,
T45 4470-4472 Sentence denotes 4.
T46 4473-4503 Sentence denotes A second level buffer zone and
T47 4504-4506 Sentence denotes 5.
T48 4507-4525 Sentence denotes Contaminated area.
T49 4526-4744 Sentence denotes Examiners should wear protective equipment in the clean area before entering the semi-contaminated area and organize autopsy instruments in the semi-contaminated areas before entering the contaminated area for autopsy.
T50 4745-5055 Sentence denotes After the autopsy, the protective clothing and gloves require disinfecting first in the contaminated area of the autopsy laboratory, and the protective clothing, mask, shoe covers, gloves, and other equipment surfaces require thoroughly disinfecting in the semi-contaminated area a second time before removing.
T51 5056-5109 Sentence denotes All must be sent for bio-safety disposal immediately.
T52 5110-5253 Sentence denotes The contaminated area must maintain a sufficient negative pressure, sufficient filtering conditions for air emission and sewage discharge [11].
T53 5254-5401 Sentence denotes Furthermore, the procedure of pathological examination and sample transfer should strictly follow the procedure of sealing after sample extraction.
T54 5402-5493 Sentence denotes The pathology laboratory should be held to standard negative pressure operating conditions.
T55 5495-5516 Sentence denotes 4 Future improvement
T56 5518-5572 Sentence denotes 4.1 Establish a multi-department joint control system
T57 5573-5820 Sentence denotes The joint control system should coordinate with multiple departments, such as the Center for Disease Control, Civil Administration Department, Health Commission and Environmental Protection Authorities for death investigation, as soon as possible.
T58 5821-5910 Sentence denotes All departments should unite together and share information about the pandemic situation.
T59 5912-5995 Sentence denotes 4.2 Improvement and training of occupational protection for forensic practitioners
T60 5996-6219 Sentence denotes Currently, many forensic practitioners lack the occupational protection awareness for infectious disease and lack of experience in death investigation for infectious disease, especially those with asymptomatic transmission.
T61 6220-6363 Sentence denotes It is necessary to establish rules of occupational protection and risk prevention monitoring systems and integrate these into regular training.
T62 6365-6429 Sentence denotes 4.3 Improvement of the forensic autopsy laboratory construction
T63 6430-6585 Sentence denotes For dealing with infected cases, autopsy laboratories should be constructed in the future to be qualified at certain biological safety levels (P1–P4) [13].
T64 6586-6877 Sentence denotes The P3 autopsy laboratory would satisfy the requirements for most of the infectious diseases, with the special requirements in terms of floor layout, maintenance structure, ventilation and air conditioning system, water supply and air supply system, sewage disposal, and disinfection system.
T65 6878-7042 Sentence denotes Each functional area of the autopsy laboratory must maintain a certain negative pressure and suction gradient to ensure no leak or reflux of contaminating air [14].
T66 7044-7085 Sentence denotes 4.4 Forensic radiology requires progress
T67 7086-7196 Sentence denotes Clinical diagnostic criteria for COVID-19 are the nucleic acid test and radiology examination by CT scan [15].
T68 7197-7320 Sentence denotes Virtual autopsy based on forensic radiology technology could play a significant role in the autopsy of infectious diseases.
T69 7321-7518 Sentence denotes CT scan of the cadaver before autopsy provides an initial assessment of a possible cause of death and also prevent forensic practitioners from directly contacting an infected but asymptomatic body.
T70 7519-7690 Sentence denotes Forensic practitioners could make a preliminary judgment on whether the deceased may be infected or not and take appropriate protective measures during subsequent autopsy.
T71 7691-7963 Sentence denotes In the past three months, these forensic practices have proven to be effective for the death investigation of confirmed or suspected infectious decedents and also exposed the defects of insufficient response, which also points out the direction for our future development.
T72 7965-7998 Sentence denotes Declaration of competing interest
T73 7999-8059 Sentence denotes The author has no financial or personal interests to report.
T74 8060-8131 Sentence denotes The author is on the editorial board of Forensic Science International:
T75 8132-8183 Sentence denotes Synergy and has previously published with Elsevier.
T76 8184-8228 Sentence denotes The opinions are solely those of the author.

0_colil

Id Subject Object Predicate Lexical cue
32412012-32198985-85749 4231-4233 32198985 denotes 11
32412012-32198985-85750 5249-5251 32198985 denotes 11

TEST0

Id Subject Object Predicate Lexical cue
32412012-234-240-85749 4231-4233 ["32198985", "32198985"] denotes 11
32412012-139-145-85750 5249-5251 ["32198985", "32198985"] denotes 11

2_test

Id Subject Object Predicate Lexical cue
32412012-32198985-30857486 4231-4233 32198985 denotes 11
32412012-32198985-30857487 5249-5251 32198985 denotes 11

MyTest

Id Subject Object Predicate Lexical cue
32412012-32198985-30857486 4231-4233 32198985 denotes 11
32412012-32198985-30857487 5249-5251 32198985 denotes 11