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PMC:7143804 / 30601-33004 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
213 1087-1089 Chemical denotes N2
214 1240-1251 Chemical denotes cyclohexane MESH:C506365
215 1416-1426 Chemical denotes norbornene MESH:C046060
216 1452-1458 Chemical denotes ethene MESH:C036216
217 1473-1483 Chemical denotes norbornene MESH:C046060
218 1518-1536 Chemical denotes cyclic hydrocarbon MESH:D006844
219 1636-1647 Chemical denotes cyclohexane MESH:C506365

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T50 518-520 Body_part denotes V2 http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 704-708 Disease denotes RRMS http://purl.obolibrary.org/obo/MONDO_0005314
T32 774-778 Disease denotes RRMS http://purl.obolibrary.org/obo/MONDO_0005314
T33 976-980 Disease denotes RRMS http://purl.obolibrary.org/obo/MONDO_0005314

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T206 336-337 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T207 456-457 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T208 702-703 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T209 892-893 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T210 1802-1803 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T211 1862-1864 http://purl.obolibrary.org/obo/CLO_0008149 denotes NE
T212 1930-1931 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T213 2083-2086 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T193 102-105 Chemical denotes COC http://purl.obolibrary.org/obo/CHEBI_53310
T194 374-382 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T195 694-697 Chemical denotes COC http://purl.obolibrary.org/obo/CHEBI_53310
T196 933-936 Chemical denotes COC http://purl.obolibrary.org/obo/CHEBI_53310
T197 1011-1014 Chemical denotes COC http://purl.obolibrary.org/obo/CHEBI_53310
T198 1087-1089 Chemical denotes N2 http://purl.obolibrary.org/obo/CHEBI_17997
T199 1192-1195 Chemical denotes COC http://purl.obolibrary.org/obo/CHEBI_53310
T200 1240-1251 Chemical denotes cyclohexane http://purl.obolibrary.org/obo/CHEBI_29005
T201 1321-1331 Chemical denotes copolymers http://purl.obolibrary.org/obo/CHEBI_53310|http://purl.obolibrary.org/obo/CHEBI_60804
T203 1416-1426 Chemical denotes norbornene http://purl.obolibrary.org/obo/CHEBI_52286
T204 1452-1458 Chemical denotes ethene http://purl.obolibrary.org/obo/CHEBI_18153
T205 1473-1483 Chemical denotes norbornene http://purl.obolibrary.org/obo/CHEBI_52286
T206 1518-1536 Chemical denotes cyclic hydrocarbon http://purl.obolibrary.org/obo/CHEBI_33663
T207 1525-1536 Chemical denotes hydrocarbon http://purl.obolibrary.org/obo/CHEBI_24632
T208 1615-1629 Chemical denotes polar solvents http://purl.obolibrary.org/obo/CHEBI_48354
T209 1621-1629 Chemical denotes solvents http://purl.obolibrary.org/obo/CHEBI_46787
T210 1636-1647 Chemical denotes cyclohexane http://purl.obolibrary.org/obo/CHEBI_29005
T211 1848-1850 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T212 1862-1864 Chemical denotes NE http://purl.obolibrary.org/obo/CHEBI_73824
T213 2079-2082 Chemical denotes dye http://purl.obolibrary.org/obo/CHEBI_37958

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T234 0-4 Sentence denotes 3.2.
T235 5-16 Sentence denotes Fabrication
T236 18-50 Sentence denotes Milling and Optical Transparency
T237 51-145 Sentence denotes The milling increased the surface roughness of the COC plates also increases the surface area.
T238 146-285 Sentence denotes Inhibition of the amplification can be caused by large surface areas as the used chemicals have more surface to have interaction with [44].
T239 286-624 Sentence denotes The created surface roughness is visualized using a FEI Sirion high resolution scanning electron microscope (HR-SEM) (FEI Company, Hillsboro, OR, USA) and measured using a Bruker Icon Dimension AFM in tapping mode with Bruker Tespa-V2 cantilevers (Bruker Nano Surfaces, Santa Barbara, CA, USA) and Gwyddion 2.52 open source freeware [62].
T240 625-659 Sentence denotes The results are shown in Figure 8.
T241 660-719 Sentence denotes The surface roughness of pristine COC had a RRMS of 3.5 nm.
T242 720-792 Sentence denotes This increased two orders of magnitude after milling (RRMS of 310.1 nm).
T243 793-992 Sentence denotes With the reported surface treatment [44,59] we were capable of decreasing the surface roughness to a value even lower than that of pristine COC and the lowest reported in literature (RRMS of 0.9 nm).
T244 993-1204 Sentence denotes For this grade of COC (TOPAS 6017) it worked the best to do four short exposures of 5 s, with N2 blow drying after each exposure, instead of one longer exposure, as is more common in other grades of COC [44,59].
T245 1205-1354 Sentence denotes The difference in duration for the cyclohexane vapor post-treatment can be explained by the different ratios of the copolymers present in each grade.
T246 1355-1468 Sentence denotes As the grade number increase, the ratio changes towards more norbornene monomers and less linear ethene monomers.
T247 1469-1656 Sentence denotes The norbornene is more apolar due to the bridged cyclic hydrocarbon present in its molecular structure and therefore, will dissolve faster in non-polar solvents, like cyclohexane (vapor).
T248 1657-1738 Sentence denotes Lowering the surface roughness also increased the optical transmittance fivefold.
T249 1739-1839 Sentence denotes Transmittance measurements in the visible range are done using a Woollam M-2000UI ellipsometer (J.A.
T250 1840-1871 Sentence denotes Woollam Co., Lincoln, NE, USA).
T251 1872-1922 Sentence denotes The results can be seen in Figure 9 and Figure 10.
T252 1923-2162 Sentence denotes Having a high optical transparency in the visible range can be desired when in situ fluorescence detection will be implemented (e.g., EvaGreen fluorescence dye has an excitation wavelength of 500 nm and emission wavelength of 525 nm [63]).
T253 2163-2403 Sentence denotes However, as in situ fluorescence detection is not used yet in this system and can also be done through the transparent PCR plate sealing foil, no further effort is put into optimizing this procedure to get even better optical transmittance.