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PMC:7143583 / 834-2975 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
39 45-52 Species denotes patient Tax:9606
40 121-128 Species denotes patient Tax:9606
41 176-183 Species denotes patient Tax:9606
42 293-300 Species denotes patient Tax:9606
43 482-489 Species denotes patient Tax:9606
44 610-618 Species denotes patients Tax:9606
45 624-631 Species denotes patient Tax:9606
46 107-115 Disease denotes lethargy MESH:D053609
47 313-319 Disease denotes fevers MESH:D005334
48 331-340 Disease denotes dry cough MESH:D003371
49 381-390 Disease denotes dry cough MESH:D003371
50 599-607 Disease denotes COVID-19 MESH:C000657245
51 656-673 Disease denotes pulmonary disease MESH:D008171
58 710-717 Species denotes patient Tax:9606
59 781-788 Species denotes patient Tax:9606
60 961-968 Species denotes patient Tax:9606
61 739-745 Chemical denotes oxygen MESH:D010100
62 1023-1025 Chemical denotes O2 MESH:D010100
63 848-868 Disease denotes respiratory distress MESH:D012128
69 1687-1705 Disease denotes lung emphysematous MESH:D041882
70 1783-1792 Disease denotes infection MESH:D007239
71 1796-1811 Disease denotes pulmonary edema MESH:D011654
72 1910-1918 Disease denotes effusion MESH:D010996
73 1922-1934 Disease denotes pneumothorax MESH:D011030
81 1055-1062 Species denotes patient Tax:9606
82 1211-1218 Species denotes patient Tax:9606
83 1379-1386 Species denotes patient Tax:9606
84 1549-1556 Species denotes patient Tax:9606
85 1100-1106 Chemical denotes oxygen MESH:D010100
86 1461-1479 Disease denotes pulmonary embolism MESH:D011655
87 1627-1635 Disease denotes COVID-19 MESH:C000657245
90 1950-1957 Species denotes patient Tax:9606
91 1978-1986 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 89-95 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T5 921-925 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T6 1151-1155 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T7 1288-1293 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T8 1492-1497 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T9 1653-1658 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T10 1687-1691 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T11 1889-1894 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 921-925 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T5 1288-1293 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 1492-1497 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T7 1653-1658 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 1687-1691 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 1889-1894 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 599-607 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 656-673 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T8 1461-1479 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T9 1627-1635 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1783-1792 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 1796-1811 Disease denotes pulmonary edema http://purl.obolibrary.org/obo/MONDO_0006932
T12 1922-1934 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T13 1978-1986 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T4 26-27 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T5 40-44 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T6 40-44 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T7 379-380 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 433-434 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 807-808 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 921-925 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T11 921-925 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T12 1151-1155 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T13 1240-1241 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T14 1242-1243 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T15 1252-1253 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1288-1293 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T17 1492-1497 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T18 1653-1658 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T19 1671-1673 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T20 1687-1691 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T21 1687-1691 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T22 1889-1894 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T23 1889-1894 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T24 1889-1894 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T25 1889-1894 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T26 1958-1964 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 40-44 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T3 739-745 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T4 1023-1025 Chemical denotes O2 http://purl.obolibrary.org/obo/CHEBI_15379
T5 1100-1106 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T6 1481-1484 Chemical denotes CTA http://purl.obolibrary.org/obo/CHEBI_17217
T7 1503-1505 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T10 1671-1673 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 107-115 Phenotype denotes lethargy http://purl.obolibrary.org/obo/HP_0001254
T8 331-340 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T9 381-390 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T10 848-868 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T11 1461-1479 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T12 1796-1811 Phenotype denotes pulmonary edema http://purl.obolibrary.org/obo/HP_0100598
T13 1922-1934 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 0-25 Sentence denotes 2 Visual case discussion
T9 26-116 Sentence denotes A 76 year old male patient presented with his wife for altered mental status and lethargy.
T10 117-211 Sentence denotes The patient's wife stated that for the last three days the patient ``had not seemed himself''.
T11 212-275 Sentence denotes She described some confusion at home and decreased interaction.
T12 276-391 Sentence denotes She reported the patient had not had fevers at home or dry cough, however she had recently experienced a dry cough.
T13 392-477 Sentence denotes The couple spent the previous weekend at a nearby casino after taking public transit.
T14 478-619 Sentence denotes The patient and wife had no recent long distance of international travel and no known sick contacts or known exposure to COVID-19 + patients.
T15 620-674 Sentence denotes The patient had no known history of pulmonary disease.
T16 675-776 Sentence denotes When vital signs were obtained the patient was found to have an oxygen saturation of 70% on room air.
T17 777-920 Sentence denotes The patient was tachypneic to a rate of 23 but did not appear to be in respiratory distress and was able to answer questions in full sentences.
T18 921-956 Sentence denotes Lung sounds were clear bilaterally.
T19 957-1050 Sentence denotes The patient was moved to an isolation room and was placed on 15 L O2 via non-rebreather mask.
T20 1051-1150 Sentence denotes The patient was then weaned and able to maintain oxygen saturation of 93% on 5 L via nasal cannula.
T21 1151-1206 Sentence denotes Cell counts and electrolytes were within normal limits.
T22 1207-1287 Sentence denotes The patient was negative for Flu A/B and had a negative respiratory viral panel.
T23 1288-1365 Sentence denotes Chest X-ray obtained showed nonspecific bibasilar airspace disease (Fig. 1 ).
T24 1366-1480 Sentence denotes Of note, the patient's D-dimer was elevated to 2574 and CT imaging was ordered to evaluate for pulmonary embolism.
T25 1481-1544 Sentence denotes CTA of the chest with PE protocol revealed bibasilar opacities.
T26 1545-1645 Sentence denotes The patient was admitted to the progressive care unit for respiratory support and COVID-19 rule out.
T27 1646-1680 Sentence denotes Fig. 1 Chest Radiograph (AP view):
T28 1681-1714 Sentence denotes Upper lung emphysematous changes.
T29 1715-1857 Sentence denotes Nonspecific bibasal airspace disease which could represent atypical infection or pulmonary edema superimposed on chronic inflammatory changes.
T30 1858-1900 Sentence denotes Stable mediastinal contour and heart size.
T31 1901-1935 Sentence denotes No large effusion or pneumothorax.
T32 1936-2040 Sentence denotes On follow-up, patient tested positive for COVID-19 with declining respiratory status over the next 24 h.
T33 2041-2141 Sentence denotes He was upgraded to the intensive care unit for high flow nasal cannula at 25 L/min with FiO2 of 0.6.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T10 3-9 GO:0007601 denotes Visual
T11 335-340 UBERON:0002048 denotes cough
T12 385-390 UBERON:0002048 denotes cough
T13 599-607 SP_7 denotes COVID-19
T14 656-665 UBERON:0002048 denotes pulmonary
T15 848-859 UBERON:0001004 denotes respiratory
T16 921-925 UBERON:0002048 denotes Lung
T17 1023-1025 CHEBI:15379;CHEBI:15379 denotes O2
T18 1136-1141 UBERON:0000004 denotes nasal
T19 1236-1239 PR:000022673 denotes Flu
T20 1263-1274 UBERON:0001004 denotes respiratory
T21 1275-1280 NCBITaxon:10239 denotes viral
T22 1461-1470 UBERON:0002048 denotes pulmonary
T23 1492-1497 UBERON:0001443 denotes chest
T24 1603-1614 UBERON:0001004 denotes respiratory
T25 1627-1635 SP_7 denotes COVID-19
T26 1687-1691 UBERON:0002048 denotes lung
T27 1727-1734 UBERON:0002294 denotes bibasal
T28 1735-1743 UBERON:0001005 denotes airspace
T29 1796-1805 UBERON:0002048 denotes pulmonary
T30 1865-1876 UBERON:0008818 denotes mediastinal
T31 1889-1894 UBERON:0000948 denotes heart
T38 1978-1986 SP_7 denotes COVID-19
T39 2002-2013 UBERON:0001004 denotes respiratory
T40 2098-2103 UBERON:0000004 denotes nasal
T41 2129-2133 CHEBI:16526;CHEBI:16526 denotes FiO2
T24657 3-9 GO:0007601 denotes Visual
T2685 335-340 UBERON:0002048 denotes cough
T12811 385-390 UBERON:0002048 denotes cough
T51644 599-607 SP_7 denotes COVID-19
T37706 656-665 UBERON:0002048 denotes pulmonary
T52518 848-859 UBERON:0001004 denotes respiratory
T8198 921-925 UBERON:0002048 denotes Lung
T11859 1023-1025 CHEBI:15379;CHEBI:15379 denotes O2
T36067 1136-1141 UBERON:0000004 denotes nasal
T43633 1236-1239 PR:000022673 denotes Flu
T88278 1263-1274 UBERON:0001004 denotes respiratory
T40849 1275-1280 NCBITaxon:10239 denotes viral
T95928 1461-1470 UBERON:0002048 denotes pulmonary
T1163 1492-1497 UBERON:0001443 denotes chest
T88354 1603-1614 UBERON:0001004 denotes respiratory
T24149 1627-1635 SP_7 denotes COVID-19
T71521 1687-1691 UBERON:0002048 denotes lung
T22121 1727-1734 UBERON:0002294 denotes bibasal
T85559 1735-1743 UBERON:0001005 denotes airspace
T99625 1796-1805 UBERON:0002048 denotes pulmonary
T35124 1865-1876 UBERON:0008818 denotes mediastinal
T63692 1889-1894 UBERON:0000948 denotes heart
T63857 1978-1986 SP_7 denotes COVID-19
T59480 2002-2013 UBERON:0001004 denotes respiratory
T43496 2098-2103 UBERON:0000004 denotes nasal
T18744 2129-2133 CHEBI:16526;CHEBI:16526 denotes FiO2