PMC:7140597 / 6261-7173
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 92 | 773-780 | Species | denotes | patient | Tax:9606 |
| 93 | 636-656 | Disease | denotes | GISAID accession IDs | MESH:C535742 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T21 | 72-78 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T22 | 561-567 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T23 | 704-710 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 267-272 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
| T3 | 561-567 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T30 | 771-772 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T31 | 809-810 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T8 | 461-463 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
| T9 | 738-740 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T41 | 0-51 | Sentence | denotes | Main clusters are highlighted in different colours. |
| T42 | 52-137 | Sentence | denotes | The Wuhan reference genome is in larger font (GenBank accession number: NC_045512.2). |
| T43 | 138-262 | Sentence | denotes | The filled circles represent the main supported clusters (bootstrap support values are indicated at the level of the nodes). |
| T44 | 263-349 | Sentence | denotes | The scale bar at the bottom of the tree represents 0.000050 nt substitutions per site. |
| T45 | 350-496 | Sentence | denotes | The cluster containing the viral sequence of the Chinese tourist who had visited Rome, Italy (GISAID accession ID: EPI_ISL_412974) is in dark red. |
| T46 | 497-693 | Sentence | denotes | This cluster includes viral sequences derived from two samples (sputum and nasopharyngeal swabs) of another Chinese tourist visiting Rome (GISAID accession IDs: EPI_ISL_410545 and EPI_ISL_410546). |
| T47 | 694-912 | Sentence | denotes | The viral genome sequence (GISAID accession ID: EPI_ISL_412973) derived from a patient from Lombardy, Italy, is in a cluster highlighted in green, which is different from that containing the Chinese tourist’s sequence. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T57 | 72-78 | SO:0001505 | denotes | genome |
| T58 | 377-382 | NCBITaxon:10239 | denotes | viral |
| T59 | 519-524 | NCBITaxon:10239 | denotes | viral |
| T60 | 561-567 | UBERON:0007311 | denotes | sputum |
| T61 | 572-586 | UBERON:0001728 | denotes | nasopharyngeal |
| T62 | 698-703 | NCBITaxon:10239 | denotes | viral |
| T63 | 704-710 | SO:0001026 | denotes | genome |
| T95867 | 72-78 | SO:0001505 | denotes | genome |
| T69699 | 377-382 | NCBITaxon:10239 | denotes | viral |
| T54856 | 519-524 | NCBITaxon:10239 | denotes | viral |
| T23824 | 561-567 | UBERON:0007311 | denotes | sputum |
| T54055 | 572-586 | UBERON:0001728 | denotes | nasopharyngeal |
| T34311 | 698-703 | NCBITaxon:10239 | denotes | viral |
| T12643 | 704-710 | SO:0001026 | denotes | genome |