PMC:7140597 / 4277-5193
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 78 | 24-34 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 79 | 152-159 | Species | denotes | patient | Tax:9606 |
| 80 | 251-261 | Species | denotes | SARS-Cov-2 | Tax:2697049 |
| 81 | 73-81 | Disease | denotes | infected | MESH:D007239 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T14 | 35-42 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T15 | 271-278 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T15 | 24-32 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T16 | 251-255 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21 | 201-202 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T22 | 225-226 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T23 | 496-502 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | MUSCLE |
| T24 | 496-502 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | MUSCLE |
| T25 | 496-502 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | MUSCLE |
| T26 | 496-502 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | MUSCLE |
| T27 | 691-692 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 116-118 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
| T2 | 178-180 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
| T3 | 796-800 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28 | 0-406 | Sentence | denotes | To analyse the obtained SARS-CoV-2 genomes respectively derived from the infected Chinese tourist (GISAID accession ID: EPI_ISL_412974) and the Italian patient (GISAID accession ID: EPI_ISL_412973) in a phylogenetic context, a dataset of 40 available SARS-Cov-2 complete genomes from different countries was retrieved from GISAID (https://www.gisaid.org/, last access 2 March 2020; Supplementary material). |
| T29 | 407-542 | Sentence | denotes | Sequence alignment was performed using MUltiple Sequence Comparison by Log- Expectation (MUSCLE) software (http://www.clustal.org) [6]. |
| T30 | 543-839 | Sentence | denotes | Estimation of the best fitting substitution model (Hasegawa, Kishino, and Yano, HKY model) and inference of the phylogenetic tree were conducted by a maximum likelihood approach using Molecular Evolutionary Genetics Analysis across Computing Platforms (MEGA X; https://www.megasoftware.net/) [7]. |
| T31 | 840-916 | Sentence | denotes | Support for the tree topology was estimated with 1,000 bootstrap replicates. |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32265007-15318951-29331402 | 539-540 | 15318951 | denotes | 6 |
| 32265007-29722887-29331403 | 836-837 | 29722887 | denotes | 7 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32265007-15318951-29331402 | 539-540 | 15318951 | denotes | 6 |
| 32265007-29722887-29331403 | 836-837 | 29722887 | denotes | 7 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T40 | 24-34 | SP_7 | denotes | SARS-CoV-2 |
| T41 | 35-42 | SO:0001026 | denotes | genomes |
| T42 | 251-261 | SP_7 | denotes | SARS-Cov-2 |
| T43 | 271-278 | SO:0001026 | denotes | genomes |
| T44 | 623-626 | PR:Q8NBH2 | denotes | HKY |
| T26369 | 24-34 | SP_7 | denotes | SARS-CoV-2 |
| T82884 | 35-42 | SO:0001026 | denotes | genomes |
| T69016 | 251-261 | SP_7 | denotes | SARS-Cov-2 |
| T23094 | 271-278 | SO:0001026 | denotes | genomes |
| T75860 | 623-626 | PR:Q8NBH2 | denotes | HKY |